These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1508 fasta sequence [GTTCGCTCGATTCCGGGTTCTTGATTTCGTCCTCACCACGCCACGCCAACGGATTTGCGTGCTTCCCCGCGAAGGATTTCCGCGCAATCGAGTGGAGAGAGGGGAGGGAAGAGATTGATTAAGAGGAGGAGGACATGGGGGCGTTCTGCTCCAAGCAGAATCCGTCGGGGCAGCAGCCGCACTGCTGCA-ACCACAGCAGCAGCAGCAATGCCGCGCCGAAGGGGAACAATCGGTTCGCCAAGTTCGGCGATGATTACCATACCCTAGAGCAGGTAACTGATGCTCTTGCACACGCTGGTCTTGAGTCATCAAATC-TGATTGTTGGGATTGA-TTTCACCAAGTCCAATGAATGGAC-AGGCAGAGTTTCCTTCAACAACCAGAGCCTGCATTCTCTGGGCCATGTCTCAAACCCATATGAGCAAGCCATATCTATCATAGGGCAAACTCTTTCACGATTTGATGAGGACAACCTGATACCATGCTATGGATTTGGTGATGCTACTACACATGACCAGAAGGTATTTAGCTTCTATCCTGACAACAAACCATGTGATGGTTTTGAACAAGCACTTGATCGGTACAGAGAAATTGTTCCACAACTACGTTTGGCTGGCCCCACTTCA-TTTGCACCGATG-ATTGAGACAGCTATTGGAATTGTGGATAGTA-GTGGTGGCCAGTATCATGTCCTACTTATAATTGCAGATGGACAGGTTACACGCAGTGTTGACACAGGTAATGGGCAGCTGAGCCCTCAGGAAAGGGAGACTATAGATGCCATTGTGAAAGCCAGTGACTACCCTTTGTCAATTGTGCTTGTTGGAGTTGGCGATGGGCCATGGGATATGATGAGGCAATTCGATGACAACATCCCTTCTCGTGCGTTCGACAACTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTGCTCTTTCAGCATTGATGGAGATCCCAGAACAGTTCAAGGCAGCAATAAACCTCCAACTTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATTTCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGCTGCAGAAAAAGACATCAGCACCTAAACAGGATAGTGACATAGGTGATCAGACTTGTCCAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGGACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTAGGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTTTTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATCAGTGTTATAGAATACTCATGGTATTCAAACTAGTACTGGTCATTTTGGATAGCATTTGTGAAATGAATGTTCCT] [+] EMBL AK066150 [GTTCGCTCGATTCCGGGTTCTTGATTTCGTCCTCACCACGCCACGCCAACGGATTTGCGTGCTTCCCCGCGAAGGATTTCCGCGCAATCGAGTGGAGAGAGGGGAGGGAAGAGATTGATTAAGAGGAGGAGGACATGGGGGCGTTCTGCTCCAAGCAGAATCCGTCGGGGCAGCAGCCGCACTGCTGCA ACCACAGCAGCAGCAGCAATGCCGCGCCGAAGGGGAACAATCGGTTCGCCAAGTTCGGCGATGATTACCATACCCTAGAGCAGGTAACTGATGCTCTTGCACACGCTGGTCTTGAGTCATCAAATC TGATTGTTGGGATTGA TTTCACCAAGTCCAATGAATGGAC AGGCAGAGTTTCCTTCAACAACCAGAGCCTGCATTCTCTGGGCCATGTCTCAAACCCATATGAGCAAGCCATATCTATCATAGGGCAAACTCTTTCACGATTTGATGAGGACAACCTGATACCATGCTATGGATTTGGTGATGCTACTACACATGACCAGAAGGTATTTAGCTTCTATCCTGACAACAAACCATGTGATGGTTTTGAACAAGCACTTGATCGGTACAGAGAAATTGTTCCACAACTACGTTTGGCTGGCCCCACTTCA TTTGCACCGATG ATTGAGACAGCTATTGGAATTGTGGATAGTA GTGGTGGCCAGTATCATGTCCTACTTATAATTGCAGATGGACAGGTTACACGCAGTGTTGACACAGGTAATGGGCAGCTGAGCCCTCAGGAAAGGGAGACTATAGATGCCATTGTGAAAGCCAGTGACTACCCTTTGTCAATTGTGCTTGTTGGAGTTGGCGATGGGCCATGGGATATGATGAGGCAATTCGATGACAACATCCCTTCTCGTGCGTTCGACAACTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTGCTCTTTCAGCATTGATGGAGATCCCAGAACAGTTCAAGGCAGCAATAAACCTCCAACTTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATTTCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGCTGCAGAAAAAGACATCAGCACCTAAACAGGATAGTGACATAGGTGATCAGACTTGTCCAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGGACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTAGGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTTTTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATCAGTGTTATAGAATACTCATGGTATTCAAACTAGTACTGGTCATTTTGGATAGCATTTGTGAAATGAATGTTCCT] [+] EMBL C26516 [ cggantnTCCGGGTTCTTGATTTCGTCCTCACCACGCCACGCCAACGGATTTGCGTGCTTCCCCGCGAAGGATTTCCGCGCAATCGAGTGGAGAGAGGGGAGGGAAGAGATTGATTAAGAGGAGGAGGACATGGGGGCGTTCTGCTCCAAGCAGAATCCGTCGGGGCAGCAG CGCACTGCT CAGACCACAGCAGCAGCAGCAATGCCGCGCCGAA GGGAACAATCGGTTCGCCAAGTTCGGCGATGATTACCATACCCTAGAGCAGGTAACTGATGCTCTTGCACACGTTGGTCTTGAGTCATCAAATCTTAATTGTTGGGATTGATTTTAACCAAGTCCAATGAATNGNCAAGGCAGAGTTTCCTTCA ] [+] EMBL C26110 [ AGAGCAGGTAACTGATGCTCTTGCACACGCTGGTCTTGAGTCATCAAATC TGATTGTTGGGATTGA TTTCACCAAGTCCAATGAATGGAC AGGCAGAGTTTCCTTCAACAACCAGAGCCTGCATTCTCTGGGCCATATCTCAAACCCATATGAGCAAGCCATATCTATCATAGGGCAAACTCTTTCACGATTTGATGAGGACAACCTGATACCATGCTATGGATTTGGTGATGCTACTACACATGACCAGAAGGTATTTAGCTTCTATCCTGACAACAAACCATGTGATGGTTTTGAACAAGCACTTGATCGGTACAGAGAAATTGTTCCACAACTACGGTTGGCTGGCCCCACTTCATTTTGCACCGATGNATTGAGACAGCTATTGGGATTGTGGGTAGTAGGTNGTGGCCAGTATCATGTCCTACTTAat ] [+] EMBL AU081504 [ GTCAATTGTGCTTGTTGGAGTTGGCGATGGCCCATGGGATATGATGAGGCAATTCGATGACAACATCCCTTCTCGTGCGTTCGACAACTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTGCTCTTTCAGCATTGATGGAGATCCCAGAACAGTTCAAGGCAGCAATAAACCTCCAACTTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATTTCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGCTGCAGAAAAAGACATCAGCACCTAAACAGGATAGTGACATAGGTGATCAGACTTGTCCAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGGACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTAGGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTTTTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATCAGTGTTATAGAATACTCATGGTATTCAAACTAGTACTGGTCATTTTGGATAGCAaaaa ] consensusID : consensus_9509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [GAACTTCACAGAGANCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTGCTNTTTCAGCATTGATGGAGATCCCCAGAACAGTTCAAGGCAGCAATAAACCTCCAACTTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATTTCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGCTGCAGAAAAAGACATCAGCACCTAAACAGGATAGTGACATAGGTGATCAGACTTGTCCAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGGACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTAGGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTTTTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATCAGTGTTATAGAATACTCATGGTATTCAAACTAAAAAAAAAAAAAA] [+] EMBL AU108204 [GAACTTCACAGAGANCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTGCTNTTTCAGCATTGATGGAGATCCCCAGAACAGTTCAAGGCAGCAATAAACCTCCAACTTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATTTCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGCTGCAGAAAAAGACATCAGCACCTAAACAGGATAGTGACATAGGTGATCAGACTTGTCCAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGGACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTAGGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTTTTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATCAGTGTTATAGAATACTCATGGTATTCAAACTAAAAAAAAAAAAAA] consensusID : consensus_9509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [TCACCACGCCACGCCAACGGATTTGCGTGCTTCCCCGCGAAGGATTTCCGCGCAATGTAGGTTCGCCTAACAAATCCGGGAGTTCTTTTGATTCGTCGTGGTTTTTATTATGTTTATTATCTCTATACGCTCTTATTTTTCGGCAATCGGTTGCTCTCCTCCCCCCAAATTCTCATCTTCAGTTCTTGCGAGGGCTTTTTTTTCTTTCCAGATTGTGGTGGGCGACTCTGTTAAACCCTATCTCTCTTTCTTCTTGAGCGGAATCGAGAGATTGCTGATTTTTTCTTGTTGATTTGTTCTGCAGCGAGTGGAGAGAGGGGANGGAAGAGATTGATTAAGAGGAGGAAGACATGGGGGCGTCTGCTCCAAGCAGA] [+] EMBL C72946 [TCACCACGCCACGCCAACGGATTTGCGTGCTTCCCCGCGAAGGATTTCCGCGCAATGTAGGTTCGCCTAACAAATCCGGGAGTTCTTTTGATTCGTCGTGGTTTTTATTATGTTTATTATCTCTATACGCTCTTATTTTTCGGCAATCGGTTGCTCTCCTCCCCCCAAATTCTCATCTTCAGTTCTTGCGAGGGCTTTTTTTTCTTTCCAGATTGTGGTGGGCGACTCTGTTAAACCCTATCTCTCTTTCTTCTTGAGCGGAATCGAGAGATTGCTGATTTTTTCTTGTTGATTTGTTCTGCAGCGAGTGGAGAGAGGGGANGGAAGAGATTGATTAAGAGGAGGAAGACATGGGGGCGTCTGCTCCAAGCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9509#0 GTTCGCTCGATTCCGGGTTCTTGATTTCGTCCTCACCACGCCACGCCAACGGATTTGCGT 60 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 GCTTCCCCGCGAAGGATTTCCGCGCAATCGAGTGGAGAGAGGGGAGGGAAGAGATTGATT 120 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 AAGAGGAGGAGGACATGGGGGCGTTCTGCTCCAAGCAGAATCCGTCGGGGCAGCAGCCGC 180 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 ACTGCTGCAACCACAGCAGCAGCAGCAATGCCGCGCCGAAGGGGAACAATCGGTTCGCCA 240 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 AGTTCGGCGATGATTACCATACCCTAGAGCAGGTAACTGATGCTCTTGCACACGCTGGTC 300 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 TTGAGTCATCAAATCTGATTGTTGGGATTGATTTCACCAAGTCCAATGAATGGACAGGCA 360 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 GAGTTTCCTTCAACAACCAGAGCCTGCATTCTCTGGGCCATGTCTCAAACCCATATGAGC 420 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 AAGCCATATCTATCATAGGGCAAACTCTTTCACGATTTGATGAGGACAACCTGATACCAT 480 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 GCTATGGATTTGGTGATGCTACTACACATGACCAGAAGGTATTTAGCTTCTATCCTGACA 540 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 ACAAACCATGTGATGGTTTTGAACAAGCACTTGATCGGTACAGAGAAATTGTTCCACAAC 600 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 TACGTTTGGCTGGCCCCACTTCATTTGCACCGATGATTGAGACAGCTATTGGAATTGTGG 660 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 ATAGTAGTGGTGGCCAGTATCATGTCCTACTTATAATTGCAGATGGACAGGTTACACGCA 720 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 GTGTTGACACAGGTAATGGGCAGCTGAGCCCTCAGGAAAGGGAGACTATAGATGCCATTG 780 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 TGAAAGCCAGTGACTACCCTTTGTCAATTGTGCTTGTTGGAGTTGGCGATGGGCCATGGG 840 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 ATATGATGAGGCAATTCGATGACAACATCCCTTCTCGTGCGTTCGACAACTTCCAGTTTG 900 consensus_9509#1 ------------------------------------------------------------ consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 TGAACTTCACAGAGATCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTG 960 consensus_9509#1 -GAACTTCACAGAGANCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTG 59 consensus_9509#2 ---------------------------------TCACCA-CGCCACGCCAAC-GGATTTG 25 *** * * * * * ***** consensus_9509#0 CTCTTTCAGCATTGATGGAGATCCC-AGAACAGTTCAAGGCAGC--AATAAACCTCCAAC 1017 consensus_9509#1 CTNTTTCAGCATTGATGGAGATCCCCAGAACAGTTCAAGGCAGC--AATAAACCTCCAAC 117 consensus_9509#2 CGTGCTTCCCCGCGAAGGATTTCC---GCGCAATGTAGGTTCGCCTAACAAATCCGGGAG 82 * * * ** *** *** * ** * * * ** ** *** * * consensus_9509#0 TTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATT 1077 consensus_9509#1 TTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATT 177 consensus_9509#2 TTCTTTTGATTCGTCGTGGTTTTTATTATGT----TTATTATCTCTATACGCTCTTATTT 138 ***** * ***** ** *** ** * *** *** * * ** consensus_9509#0 TCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGC 1137 consensus_9509#1 TCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGC 237 consensus_9509#2 TTCGGCAAT----CGGTTGCTCTCCTCCC-------CCCAAATTCTCATCT-TCAGTTCT 186 * * **** ** ***** * * * *** * * ** * ** consensus_9509#0 TGCAGAAAAAGACATCAGCACCTAAACAG--GATAGTGACATAGGTGA-TCAGACTTGTC 1194 consensus_9509#1 TGCAGAAAAAGACATCAGCACCTAAACAG--GATAGTGACATAGGTGA-TCAGACTTGTC 294 consensus_9509#2 TGCGAGGGCTTTTTTTTCTTTCCAGATTGTGGTGGGCGACTCTGTTAAACCCTATCTCTC 246 *** * * * * * * * *** * * * * * * ** consensus_9509#0 CAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGG 1254 consensus_9509#1 CAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGG 354 consensus_9509#2 TTTCTTCTTGAGCGGAATCGAGAGATTGCTGATTTTTTCTTGTTGATTTGTTCTGCAGCG 306 * ** **** * * * *** ** ** * *** * consensus_9509#0 ACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTA 1314 consensus_9509#1 ACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTA 414 consensus_9509#2 AGTGGAGAGAGGGGANGGAAG--AGATTGATTAAGAGGAGGAAGACAT--GGGGGCGTCT 362 * ** * *** * * * * *** **** * * * * * consensus_9509#0 GGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTT 1374 consensus_9509#1 GGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTT 474 consensus_9509#2 GCTCCAAGCAGA------------------------------------------------ 374 * * * * consensus_9509#0 TTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATC 1434 consensus_9509#1 TTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATC 534 consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 AGTGTTATAGAATACTCATGGTATTCAAACTAGTACTGGTCATTTTGGATAGCATTTGTG 1494 consensus_9509#1 AGTGTTATAGAATACTCATGGTATTCAAACTAAAAAAAAAAAAAA--------------- 579 consensus_9509#2 ------------------------------------------------------------ consensus_9509#0 AAATGAATGTTCCT 1508 consensus_9509#1 -------------- consensus_9509#2 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||