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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1508 fasta sequence
[GTTCGCTCGATTCCGGGTTCTTGATTTCGTCCTCACCACGCCACGCCAACGGATTTGCGTGCTTCCCCGCGAAGGATTTCCGCGCAATCGAGTGGAGAGAGGGGAGGGAAGAGATTGATTAAGAGGAGGAGGACATGGGGGCGTTCTGCTCCAAGCAGAATCCGTCGGGGCAGCAGCCGCACTGCTGCA-ACCACAGCAGCAGCAGCAATGCCGCGCCGAAGGGGAACAATCGGTTCGCCAAGTTCGGCGATGATTACCATACCCTAGAGCAGGTAACTGATGCTCTTGCACACGCTGGTCTTGAGTCATCAAATC-TGATTGTTGGGATTGA-TTTCACCAAGTCCAATGAATGGAC-AGGCAGAGTTTCCTTCAACAACCAGAGCCTGCATTCTCTGGGCCATGTCTCAAACCCATATGAGCAAGCCATATCTATCATAGGGCAAACTCTTTCACGATTTGATGAGGACAACCTGATACCATGCTATGGATTTGGTGATGCTACTACACATGACCAGAAGGTATTTAGCTTCTATCCTGACAACAAACCATGTGATGGTTTTGAACAAGCACTTGATCGGTACAGAGAAATTGTTCCACAACTACGTTTGGCTGGCCCCACTTCA-TTTGCACCGATG-ATTGAGACAGCTATTGGAATTGTGGATAGTA-GTGGTGGCCAGTATCATGTCCTACTTATAATTGCAGATGGACAGGTTACACGCAGTGTTGACACAGGTAATGGGCAGCTGAGCCCTCAGGAAAGGGAGACTATAGATGCCATTGTGAAAGCCAGTGACTACCCTTTGTCAATTGTGCTTGTTGGAGTTGGCGATGGGCCATGGGATATGATGAGGCAATTCGATGACAACATCCCTTCTCGTGCGTTCGACAACTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTGCTCTTTCAGCATTGATGGAGATCCCAGAACAGTTCAAGGCAGCAATAAACCTCCAACTTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATTTCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGCTGCAGAAAAAGACATCAGCACCTAAACAGGATAGTGACATAGGTGATCAGACTTGTCCAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGGACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTAGGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTTTTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATCAGTGTTATAGAATACTCATGGTATTCAAACTAGTACTGGTCATTTTGGATAGCATTTGTGAAATGAATGTTCCT]
[+] EMBL AK066150 [GTTCGCTCGATTCCGGGTTCTTGATTTCGTCCTCACCACGCCACGCCAACGGATTTGCGTGCTTCCCCGCGAAGGATTTCCGCGCAATCGAGTGGAGAGAGGGGAGGGAAGAGATTGATTAAGAGGAGGAGGACATGGGGGCGTTCTGCTCCAAGCAGAATCCGTCGGGGCAGCAGCCGCACTGCTGCA ACCACAGCAGCAGCAGCAATGCCGCGCCGAAGGGGAACAATCGGTTCGCCAAGTTCGGCGATGATTACCATACCCTAGAGCAGGTAACTGATGCTCTTGCACACGCTGGTCTTGAGTCATCAAATC TGATTGTTGGGATTGA TTTCACCAAGTCCAATGAATGGAC AGGCAGAGTTTCCTTCAACAACCAGAGCCTGCATTCTCTGGGCCATGTCTCAAACCCATATGAGCAAGCCATATCTATCATAGGGCAAACTCTTTCACGATTTGATGAGGACAACCTGATACCATGCTATGGATTTGGTGATGCTACTACACATGACCAGAAGGTATTTAGCTTCTATCCTGACAACAAACCATGTGATGGTTTTGAACAAGCACTTGATCGGTACAGAGAAATTGTTCCACAACTACGTTTGGCTGGCCCCACTTCA TTTGCACCGATG ATTGAGACAGCTATTGGAATTGTGGATAGTA GTGGTGGCCAGTATCATGTCCTACTTATAATTGCAGATGGACAGGTTACACGCAGTGTTGACACAGGTAATGGGCAGCTGAGCCCTCAGGAAAGGGAGACTATAGATGCCATTGTGAAAGCCAGTGACTACCCTTTGTCAATTGTGCTTGTTGGAGTTGGCGATGGGCCATGGGATATGATGAGGCAATTCGATGACAACATCCCTTCTCGTGCGTTCGACAACTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTGCTCTTTCAGCATTGATGGAGATCCCAGAACAGTTCAAGGCAGCAATAAACCTCCAACTTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATTTCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGCTGCAGAAAAAGACATCAGCACCTAAACAGGATAGTGACATAGGTGATCAGACTTGTCCAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGGACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTAGGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTTTTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATCAGTGTTATAGAATACTCATGGTATTCAAACTAGTACTGGTCATTTTGGATAGCATTTGTGAAATGAATGTTCCT]
[+] EMBL C26516 [ cggantnTCCGGGTTCTTGATTTCGTCCTCACCACGCCACGCCAACGGATTTGCGTGCTTCCCCGCGAAGGATTTCCGCGCAATCGAGTGGAGAGAGGGGAGGGAAGAGATTGATTAAGAGGAGGAGGACATGGGGGCGTTCTGCTCCAAGCAGAATCCGTCGGGGCAGCAG CGCACTGCT CAGACCACAGCAGCAGCAGCAATGCCGCGCCGAA GGGAACAATCGGTTCGCCAAGTTCGGCGATGATTACCATACCCTAGAGCAGGTAACTGATGCTCTTGCACACGTTGGTCTTGAGTCATCAAATCTTAATTGTTGGGATTGATTTTAACCAAGTCCAATGAATNGNCAAGGCAGAGTTTCCTTCA ]
[+] EMBL C26110 [ AGAGCAGGTAACTGATGCTCTTGCACACGCTGGTCTTGAGTCATCAAATC TGATTGTTGGGATTGA TTTCACCAAGTCCAATGAATGGAC AGGCAGAGTTTCCTTCAACAACCAGAGCCTGCATTCTCTGGGCCATATCTCAAACCCATATGAGCAAGCCATATCTATCATAGGGCAAACTCTTTCACGATTTGATGAGGACAACCTGATACCATGCTATGGATTTGGTGATGCTACTACACATGACCAGAAGGTATTTAGCTTCTATCCTGACAACAAACCATGTGATGGTTTTGAACAAGCACTTGATCGGTACAGAGAAATTGTTCCACAACTACGGTTGGCTGGCCCCACTTCATTTTGCACCGATGNATTGAGACAGCTATTGGGATTGTGGGTAGTAGGTNGTGGCCAGTATCATGTCCTACTTAat ]
[+] EMBL AU081504 [ GTCAATTGTGCTTGTTGGAGTTGGCGATGGCCCATGGGATATGATGAGGCAATTCGATGACAACATCCCTTCTCGTGCGTTCGACAACTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTGCTCTTTCAGCATTGATGGAGATCCCAGAACAGTTCAAGGCAGCAATAAACCTCCAACTTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATTTCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGCTGCAGAAAAAGACATCAGCACCTAAACAGGATAGTGACATAGGTGATCAGACTTGTCCAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGGACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTAGGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTTTTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATCAGTGTTATAGAATACTCATGGTATTCAAACTAGTACTGGTCATTTTGGATAGCAaaaa ]
consensusID : consensus_9509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[GAACTTCACAGAGANCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTGCTNTTTCAGCATTGATGGAGATCCCCAGAACAGTTCAAGGCAGCAATAAACCTCCAACTTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATTTCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGCTGCAGAAAAAGACATCAGCACCTAAACAGGATAGTGACATAGGTGATCAGACTTGTCCAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGGACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTAGGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTTTTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATCAGTGTTATAGAATACTCATGGTATTCAAACTAAAAAAAAAAAAAA]
[+] EMBL AU108204 [GAACTTCACAGAGANCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTGCTNTTTCAGCATTGATGGAGATCCCCAGAACAGTTCAAGGCAGCAATAAACCTCCAACTTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATTTCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGCTGCAGAAAAAGACATCAGCACCTAAACAGGATAGTGACATAGGTGATCAGACTTGTCCAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGGACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTAGGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTTTTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATCAGTGTTATAGAATACTCATGGTATTCAAACTAAAAAAAAAAAAAA]
consensusID : consensus_9509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence
[TCACCACGCCACGCCAACGGATTTGCGTGCTTCCCCGCGAAGGATTTCCGCGCAATGTAGGTTCGCCTAACAAATCCGGGAGTTCTTTTGATTCGTCGTGGTTTTTATTATGTTTATTATCTCTATACGCTCTTATTTTTCGGCAATCGGTTGCTCTCCTCCCCCCAAATTCTCATCTTCAGTTCTTGCGAGGGCTTTTTTTTCTTTCCAGATTGTGGTGGGCGACTCTGTTAAACCCTATCTCTCTTTCTTCTTGAGCGGAATCGAGAGATTGCTGATTTTTTCTTGTTGATTTGTTCTGCAGCGAGTGGAGAGAGGGGANGGAAGAGATTGATTAAGAGGAGGAAGACATGGGGGCGTCTGCTCCAAGCAGA]
[+] EMBL C72946 [TCACCACGCCACGCCAACGGATTTGCGTGCTTCCCCGCGAAGGATTTCCGCGCAATGTAGGTTCGCCTAACAAATCCGGGAGTTCTTTTGATTCGTCGTGGTTTTTATTATGTTTATTATCTCTATACGCTCTTATTTTTCGGCAATCGGTTGCTCTCCTCCCCCCAAATTCTCATCTTCAGTTCTTGCGAGGGCTTTTTTTTCTTTCCAGATTGTGGTGGGCGACTCTGTTAAACCCTATCTCTCTTTCTTCTTGAGCGGAATCGAGAGATTGCTGATTTTTTCTTGTTGATTTGTTCTGCAGCGAGTGGAGAGAGGGGANGGAAGAGATTGATTAAGAGGAGGAAGACATGGGGGCGTCTGCTCCAAGCAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9509#0 GTTCGCTCGATTCCGGGTTCTTGATTTCGTCCTCACCACGCCACGCCAACGGATTTGCGT 60
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 GCTTCCCCGCGAAGGATTTCCGCGCAATCGAGTGGAGAGAGGGGAGGGAAGAGATTGATT 120
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 AAGAGGAGGAGGACATGGGGGCGTTCTGCTCCAAGCAGAATCCGTCGGGGCAGCAGCCGC 180
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 ACTGCTGCAACCACAGCAGCAGCAGCAATGCCGCGCCGAAGGGGAACAATCGGTTCGCCA 240
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 AGTTCGGCGATGATTACCATACCCTAGAGCAGGTAACTGATGCTCTTGCACACGCTGGTC 300
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 TTGAGTCATCAAATCTGATTGTTGGGATTGATTTCACCAAGTCCAATGAATGGACAGGCA 360
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 GAGTTTCCTTCAACAACCAGAGCCTGCATTCTCTGGGCCATGTCTCAAACCCATATGAGC 420
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 AAGCCATATCTATCATAGGGCAAACTCTTTCACGATTTGATGAGGACAACCTGATACCAT 480
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 GCTATGGATTTGGTGATGCTACTACACATGACCAGAAGGTATTTAGCTTCTATCCTGACA 540
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 ACAAACCATGTGATGGTTTTGAACAAGCACTTGATCGGTACAGAGAAATTGTTCCACAAC 600
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 TACGTTTGGCTGGCCCCACTTCATTTGCACCGATGATTGAGACAGCTATTGGAATTGTGG 660
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 ATAGTAGTGGTGGCCAGTATCATGTCCTACTTATAATTGCAGATGGACAGGTTACACGCA 720
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 GTGTTGACACAGGTAATGGGCAGCTGAGCCCTCAGGAAAGGGAGACTATAGATGCCATTG 780
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 TGAAAGCCAGTGACTACCCTTTGTCAATTGTGCTTGTTGGAGTTGGCGATGGGCCATGGG 840
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 ATATGATGAGGCAATTCGATGACAACATCCCTTCTCGTGCGTTCGACAACTTCCAGTTTG 900
consensus_9509#1 ------------------------------------------------------------
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 TGAACTTCACAGAGATCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTG 960
consensus_9509#1 -GAACTTCACAGAGANCATGTCAAGACCTGTTCCTGCCAGCAAAAAGGAGGCAGAATTTG 59
consensus_9509#2 ---------------------------------TCACCA-CGCCACGCCAAC-GGATTTG 25
*** * * * * * *****
consensus_9509#0 CTCTTTCAGCATTGATGGAGATCCC-AGAACAGTTCAAGGCAGC--AATAAACCTCCAAC 1017
consensus_9509#1 CTNTTTCAGCATTGATGGAGATCCCCAGAACAGTTCAAGGCAGC--AATAAACCTCCAAC 117
consensus_9509#2 CGTGCTTCCCCGCGAAGGATTTCC---GCGCAATGTAGGTTCGCCTAACAAATCCGGGAG 82
* * * ** *** *** * ** * * * ** ** *** * *
consensus_9509#0 TTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATT 1077
consensus_9509#1 TTCTTGGAAAACGTCGAGGATTTCCACATCGAACAGTGTTACCTCCACCTGTGAGGGATT 177
consensus_9509#2 TTCTTTTGATTCGTCGTGGTTTTTATTATGT----TTATTATCTCTATACGCTCTTATTT 138
***** * ***** ** *** ** * *** *** * * **
consensus_9509#0 TCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGC 1137
consensus_9509#1 TCCAACAATACTATGGGTGCTCAACAGTCAAAGAAACGCAATCTACTAGCTATGGGTCGC 237
consensus_9509#2 TTCGGCAAT----CGGTTGCTCTCCTCCC-------CCCAAATTCTCATCT-TCAGTTCT 186
* * **** ** ***** * * * *** * * ** * **
consensus_9509#0 TGCAGAAAAAGACATCAGCACCTAAACAG--GATAGTGACATAGGTGA-TCAGACTTGTC 1194
consensus_9509#1 TGCAGAAAAAGACATCAGCACCTAAACAG--GATAGTGACATAGGTGA-TCAGACTTGTC 294
consensus_9509#2 TGCGAGGGCTTTTTTTTCTTTCCAGATTGTGGTGGGCGACTCTGTTAAACCCTATCTCTC 246
*** * * * * * * * *** * * * * * * **
consensus_9509#0 CAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGG 1254
consensus_9509#1 CAATCTGCTGGTTGGAAGCAAAGAACCTTGCTTTTGGATGTGGGCATCAGACGTGCTCGG 354
consensus_9509#2 TTTCTTCTTGAGCGGAATCGAGAGATTGCTGATTTTTTCTTGTTGATTTGTTCTGCAGCG 306
* ** **** * * * *** ** ** * *** *
consensus_9509#0 ACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTA 1314
consensus_9509#1 ACTGCGGGAAGGATCTGAAGGTTTGCCCCATTTGCCAGAGGGAAATCTCCACAAGAATTA 414
consensus_9509#2 AGTGGAGAGAGGGGANGGAAG--AGATTGATTAAGAGGAGGAAGACAT--GGGGGCGTCT 362
* ** * *** * * * * *** **** * * * * *
consensus_9509#0 GGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTT 1374
consensus_9509#1 GGCTCTACTGAAGTTGAGAATCTATACGCAATTGGCACTTTTTAGCATACACTTACACTT 474
consensus_9509#2 GCTCCAAGCAGA------------------------------------------------ 374
* * * *
consensus_9509#0 TTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATC 1434
consensus_9509#1 TTTGTTCCTTATGATTTAAGATTTTGCAAGAGGGAGCACTAGCTGTAAATACAGTTTATC 534
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 AGTGTTATAGAATACTCATGGTATTCAAACTAGTACTGGTCATTTTGGATAGCATTTGTG 1494
consensus_9509#1 AGTGTTATAGAATACTCATGGTATTCAAACTAAAAAAAAAAAAAA--------------- 579
consensus_9509#2 ------------------------------------------------------------
consensus_9509#0 AAATGAATGTTCCT 1508
consensus_9509#1 --------------
consensus_9509#2 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||