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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 975 fasta sequence
[AACACAACACAGCAGGTGAAGCGAGAGAGAGAGAGAGAAGCCACAGGCGCAGCCTCCTTGCTCGCATCATCATCCATGGCGGCGACCGCGCCTCGTCTCCTCCTGATGGCTCTCATGGCCGCCACCCTCGCCGGCCGGTCAGAGGGGGCGTGGTGCATTTGCAGGCAGGACATGCCGGACAGCACGCTGCAGAAGACGCTGGACTACGCGTGCGGCGACGGCGCCGACTGCAAGCCCATCCAGCAGAGCGGCGCCTGCTTCAGCCCGGACACCGTCAAGGCCCACTGTTCCTACGCCGTCAACAGCTTCTACCAGCGCAACAACCAGAACTCCCAGGCCTGCGTCTTCTCTGGCACCGCCACCCTCGTCACCACCGACCCAAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGACAAGC-GGCACCGGGGGCAGCACTGGCGTGGACGGCCCTCCTGGAATGGGGCTAGGTCCTTCAAGCTTCAAC-GACAACAGTGGCGCCAGCCTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGGTAGTGGTGGTGGTGGCAAGCAGAAAACGAACCCTTTGATGACAATGATTGTATTCCATTCTGGTGAAGAATTTGGGAGTGCTGAGACCCTAACGGGTTGCATGTTGCTGTGCTGCCATTTCCTCCTTTTTCGCTAAAAAAAAAATAAATTTTTAGTTCATGCTAGGTGGGAGGGTTATGTCTTGTTATGATCAGTTGTCCTGTGAAGCATGGTTGCTCTGAATCTCTCTCTGATGATGCTGAATGGAGTGCCATGGTTGATATAGTGCTATTGTGAAAAA]
[+] EMBL AK103836 [AACACAACACAGCAGGTGAAGCGAGAGAGAGAGAGAGAAGCCACAGGCGCAGCCTCCTTGCTCGCATCATCATCCATGGCGGCGACCGCGCCTCGTCTCCTCCTGATGGCTCTCATGGCCGCCACCCTCGCCGGCCGGTCAGAGGGGGCGTGGTGCATTTGCAGGCAGGACATGCCGGACAGCACGCTGCAGAAGACGCTGGACTACGCGTGCGGCGACGGCGCCGACTGCAAGCCCATCCAGCAGAGCGGCGCCTGCTTCAGCCCGGACACCGTCAAGGCCCACTGTTCCTACGCCGTCAACAGCTTCTACCAGCGCAACAACCAGAACTCCCAGGCCTGCGTCTTCTCTGGCACCGCCACCCTCGTCACCACCGACCCAAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGACAAGC GGCACCGGGGGCAGCACTGGCGTGGACGGCCCTCCTGGAATGGGGCTAGGTCCTTCAAGCTTCAAC GACAACAGTGGCGCCAGCCTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGGTAGTGGTGGTGGTGGCAAGCAGAAAACGAACCCTTTGATGACAATGATTGTATTCCATTCTGGTGAAGAATTTGGGAGTGCTGAGACCCTAACGGGTTGCATGTTG ]
[+] EMBL BI795569 [ CAAC GCTGCATGTACCCTGCCTCTGCTAGCGCT CTGGGACGGGCACACCGACAAGC GGCACCGGGGGCAGCACTGGCGTGGACGGCCCTCCTGGAAT GGGCTAGGTCCTTCAAGCTTCAAC GACAACAGTGGCGCCAGCCTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGGTAGTGGTGGTGGTGGCAAGCAGAAAACGAACCCTTTGATGACAATGATTGTATTCCATTCTGGTGAAGAATTTGGGAGTGCTGAGACCCTAACGGGTTGCATGTTGCTGTGCTGCCATTTCCTCCTTTTTCGCTAAAAAAAAAA ]
[+] EMBL AU083481 [ TACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGACAAGCGGGCACCGGGGGCAGCACTGGCGTGGACGGCCCTCCTGGAATGGGGCTAGGTCCTTCAAGCTTCAACGGACAACAGTGGCGCCAGCCTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGGTAGTGGTGGTGGTGGCAAGCAGAAAACGAACCCTTTGATGACAATGATTGTATTCCATTCTGGTGAAGAATTTGGGAGTGCTGAGACCCTAACGGGTTGCATGTTGCTGTGCTGCCATTTCCTCCTTTTTCGCTATCTCTGCTGTAAATTTTTAGTTCATGCTAGGTGGGAGGGTTATGTCTTGTTATGATCAGTTGTCCTGTGAAGCATGGTTGCTCTGAATCTCTCTCTGATGATGCTGAATGGAGTGCCATGGTTGATATAGTGCTATTGTGAAAAA]
consensusID : consensus_9515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 545 fasta sequence
[GCCCGGACACCGTCAAGGCCCACTGTTCCTACTCCGTCAACAGCTTCTACCAGCGCAACAACCAGAACTCCCAGGCCTGCGTCTTCTCTGCACCGCCACCCTCGTCACCACCGACCCAAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGACAAGCGGCACCGGGGGCAGCACTGGCGTGGACGGCCCTCCTGGAATGGGGCTAGGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGCCTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGCTGCCATTTCCTCCTTTTTCGCTATCTCTGCTGTAAATTTTTAGTTCATGCTAGGTGGGAGGGTTATGTCTTGTTATGATCAGTTGTCCTGTGAAGCATGGTTGCTCTGAAAAA]
[+] EMBL BI799561 [GCCCGGACACCGTCAAGGCCCACTGTTCCTACTCCGTCAACAGCTTCTACCAGCGCAACAACCAGAACTCCCAGGCCTGCGTCTTCTCTGCACCGCCACCCTCGTCACCACCGACCCAAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGACAAGCGGCACCGGGGGCAGCACTGGCGTGGACGGCCCTCCTGGAATGGGGCTAGGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGCCTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTGTTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGCTGCCATTTCCTCCTTTTTCGCTATCTCTGCTGTAAATTTTTAGTTCATGCTAGGTGGGAGGGTTATGTCTTGTTATGATCAGTTGTCCTGTGAAGCATGGTTGCTCTGAAAAA]
[+] EMBL C74186 [ GTACCCTGCCTCTGCTAGCGCTGCTGGGACGGGCACACCGACAAGCGGCACCGGGGGCAGCACTGGCGTGGACGGCCCTACTGGAATGGGGCTAGGTCCTTCAAGCTTCAACGACAACAGTTGCGCCA CTCCTCCCGGAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGAGTTTAGGGCGTNCGATGAGGAGACAAGACA CCCCTCTCCTCCCCCCTTACTGTTCANGGGTCTTGTTTCTTGCACTTT ]
consensusID : consensus_9515#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[CGGCCTCGCTAGCGCTGCTGGGACGGCCACACCGACAAGCGGCACCGGGGCCAGCACTGGCGTGGACGCCCACTCCTGGAATGGGGCTAGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGCACTCACTCCCGGAGGTCGGAACGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGATTTAGGGCTCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCTTACTGTTCAGGGTCTGTTCTGCACTTTCTTTCTAGCCCATTCCCTTTTCGCTATCTCCTGTAATTTTATTCATTAGTGGAGGTTATCTGTAGACATGTCTGGAACAGGTGCTCTGAA]
[+] EMBL BI799102 [CGGCCTCGCTAGCGCTGCTGGGACGGCCACACCGACAAGCGGCACCGGGGCCAGCACTGGCGTGGACGCCCACTCCTGGAATGGGGCTAGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGCACTCACTCCCGGAGGTCGGAACGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTTAGTTAGATTTAGGGCTCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCTTACTGTTCAGGGTCTGTTCTGCACTTTCTTTCTAGCCCATTCCCTTTTCGCTATCTCCTGTAATTTTATTCATTAGTGGAGGTTATCTGTAGACATGTCTGGAACAGGTGCTCTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9515#0 AACACAACACAGCAGGTGAAGCGAGAGAGAGAGAGAGAAGCCACAGGCGCAGCCTCCTTG 60
consensus_9515#1 ------------------------------------------------------------
consensus_9515#2 ------------------------------------------------------------
consensus_9515#0 CTCGCATCATCATCCATGGCGGCGACCGCGCCTCGTCTCCTCCTGATGGCTCTCATGGCC 120
consensus_9515#1 ------------------------------------------------------------
consensus_9515#2 ------------------------------------------------------------
consensus_9515#0 GCCACCCTCGCCGGCCGGTCAGAGGGGGCGTGGTGCATTTGCAGGCAGGACATGCCGGAC 180
consensus_9515#1 ------------------------------------------------------------
consensus_9515#2 ------------------------------------------------------------
consensus_9515#0 AGCACGCTGCAGAAGACGCTGGACTACGCGTGCGGCGACGGCGCCGACTGCAAGCCCATC 240
consensus_9515#1 ------------------------------------------------------------
consensus_9515#2 ------------------------------------------------------------
consensus_9515#0 CAGCAGAGCGGCGCCTGCTTCAGCCCGGACACCGTCAAGGCCCACTGTTCCTACGCCGTC 300
consensus_9515#1 ----------------------GCCCGGACACCGTCAAGGCCCACTGTTCCTACTCCGTC 38
consensus_9515#2 ------------------------------------------------------------
consensus_9515#0 AACAGCTTCTACCAGCGCAACAACCAGAACTCCCAGGCCTGCGTCTTCTCTGGCACCGCC 360
consensus_9515#1 AACAGCTTCTACCAGCGCAACAACCAGAACTCCCAGGCCTGCGTCTTCTCTG-CACCGCC 97
consensus_9515#2 ------------------------------------------------------------
consensus_9515#0 ACCCTCGTCACCACCGACCCAAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCT 420
consensus_9515#1 ACCCTCGTCACCACCGACCCAAGCTCCAACGGCTGCATGTACCCTGCCTCTGCTAGCGCT 157
consensus_9515#2 -------------------------------------------CGGCCTC-GCTAGCGCT 16
* ***** *********
consensus_9515#0 GCTGGGACGGGCACACCGACAAGCGGCACCGGGGGCAGCACTGGCGTGGACGGCC-CTCC 479
consensus_9515#1 GCTGGGACGGGCACACCGACAAGCGGCACCGGGGGCAGCACTGGCGTGGACGGCC-CTCC 216
consensus_9515#2 GCTGGGACGGCCACACCGACAAGCGGCACCGGGGCCAGCACTGGCGTGGACGCCCACTCC 76
********** *********************** ***************** ** ****
consensus_9515#0 TGGAATGGGGCTAGGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGC-CTC-CTCCCG 537
consensus_9515#1 TGGAATGGGGCTAGGTCCTTCAAGCTTCAACGACAACAGTGGCGCCAGC-CTC-CTCCCG 274
consensus_9515#2 TGGAATGGGGCTAG-TCCTTCAAGCTTCAACGACAACAGTGGCGCCAGCACTCACTCCCG 135
************** ********************************** *** ******
consensus_9515#0 GAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTT 597
consensus_9515#1 GAGGTCGGAACGGCGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTT 334
consensus_9515#2 GAGGTCGGAACG-CGATGTGGATACTGATCCTCGCTTGCTCAATCATGGTTCTGAACTTT 194
************ ***********************************************
consensus_9515#0 AGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTG 657
consensus_9515#1 AGTTAGAGTTTAGGGCGTGCGATGAGGAGACAAGACACCCCCTCTCCTCCCCCCTTACTG 394
consensus_9515#2 AGTTAGA-TTTAGGGC--TCGATGAGGAGACAAGACACCCCCTCTCCTCCCCC-TTACTG 250
******* ******** ********************************** ******
consensus_9515#0 TTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTGGTAGTGGTGGTGGTGGCAAGCAG 717
consensus_9515#1 TTCAGGGGTCTTGTTTCTTGCACTTTTCTTTCTAGTG----------------------- 431
consensus_9515#2 TTCAGGG----TCTGTTCTGCACTTT-CTTTCTAGCC----------------------- 282
******* * * * ******** ********
consensus_9515#0 AAAACGAACCCTTTGATGACAATGATTGTATTCCATTCTGGTGAAGAATTTGGGAGTGCT 777
consensus_9515#1 ------------------------------------------------------------
consensus_9515#2 ----------------------------CATTCCCTTT---------------------- 292
consensus_9515#0 GAGACCCTAACGGGTTGCATGTTGCTGTGCTGCCATTTCCTCCTTTTTCGCTAAAAAAAA 837
consensus_9515#1 -----------------------------CTGCCATTTCCTCCTTTTTCGCTATCTCTGC 462
consensus_9515#2 -----------------------------TCGCTATCTCCTGTAATTTTATTCATTAGTG 323
** ** **** *** *
consensus_9515#0 AATAAATTTTTAGTTCATGCTAGGTGGGAGGGTTATGTCTTGTTATGATCAGTTGTCCTG 897
consensus_9515#1 TGTAAATTTTTAGTTCATGCTAGGTGGGAGGGTTATGTCTTGTTATGATCAGTTGTCCTG 522
consensus_9515#2 GAGGTTATCTGTAGACATGTCTGGAACAGGTGCTCTGAA--------------------- 362
* * **** ** * * * **
consensus_9515#0 TGAAGCATGGTTGCTCTGAATCTCTCTCTGATGATGCTGAATGGAGTGCCATGGTTGATA 957
consensus_9515#1 TGAAGCATGGTTGCTCTGAAAAA------------------------------------- 545
consensus_9515#2 ------------------------------------------------------------
consensus_9515#0 TAGTGCTATTGTGAAAAA 975
consensus_9515#1 ------------------
consensus_9515#2 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||