These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1143 fasta sequence [CTCGGCGCATCCACGCAACCCACCCGTCGCGAGTCGCGAGCAGATCAAAAACCCCATCGCCGCGGCGATCACCGGAGGGACCAGGCCGGGCGGCCATCCGTACTCCGCCGCGATGATGAACGACGGCGATGTGGCGCGGCAGCTGAAGCAGATGACGGACTTCATCCGCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGGAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATCAGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAATTGAATACTCAAAGCAGCTCAATGCTTCCCGACTTGAAGTTCTGCAAGCTCAAGATGATTTAGCGATGTCTATGTTGGAGGCAGCAGGGAAAGAGCTACTGTACATAACCCGAGATCACCATGTATACAAGAATCTTCTTAGGATATTTATTGTTCAGAGCTTGCTGCGTTTGAAGGAGCCAGCTGTGATTCTGCGCTGCAGGAAGGAGGATCGTGAGCTTGTTGAATCAGTTTTGGAGTCTGCAAAGAATGAATATGCAGACAAAGCAAATATATATCCTCCTGAAATAATGGTAGACCGTAATGTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTGCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGAT-AGTCTGTGAAAATACATTGGATGCTAGACTAG-AGGTGGTTTTCAGAAAGAAGCTACCAGAGATTCGTCGAAGCC-TTC-TTGGGCAGGTAGCTGCTT-GACCGATTCATAAATACAGGATGCTGCACAATACCGTTTTCTTCTGCATGATGGTGTCAAAGAAAGCATTTTGGCAGTTAAAATGATTTATCACTTTGCTCAAGTCTGTTACATATATATTTTTTATAGGGAGCCACTGTCATCAAACTACAGACCTTAGTATTGCCGATAGCGAATAAATTGATATGTTCATGTTGCTCACGATTTCTCATAATAAGGCCTAAGAGGTGTAGTTATCCCATTTATATGTTCATCTTTTCTCACAGAAGACAATCCATTGTCATTTATTCATCTGTTATTTGTTTTTGTTTTCATGGAAATAATATACCAAGGCCTC] [+] EMBL AK072778 [CTCGGCGCATCCACGCAACCCACCCGTCGCGAGTCGCGAGCAGATCAAAAACCCCATCGCCGCGGCGATCACCGGAGGGACCAGGCCGGGCGGCCATCCGTACTCCGCCGCGATGATGAACGACGGCGATGTGGCGCGGCAGCTGAAGCAGATGACGGACTTCATCCGCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGGAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATCAGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAATTGAATACTCAAAGCAGCTCAATGCTTCCCGACTTGAAGTTCTGCAAGCTCAAGATGATTTAGCGATGTCTATGTTGGAGGCAGCAGGGAAAGAGCTACTGTACATAACCCGAGATCACCATGTATACAAGAATCTTCTTAGGATATTTATTGTTCAGAGCTTGCTGCGTTTGAAGGAGCCAGCTGTGATTCTGCGCTGCAGGAAGGAGGATCGTGAGCTTGTTGAATCAGTTTTGGAGTCTGCAAAGAATGAATATGCAGACAAAGCAAATATATATCCTCCTGAAATAATGGTAGACCGTAATGTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTGCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGAT AGTCTGTGAAAATACATTGGATGCTAGACTAG AGGTGGTTTTCAGAAAGAAGCTACCAGAGATTCGTCGAAGCC TTC TTGGGCAGGTAGCTGCTT GACCGATTCATAAATACAGGATGCTGCACAATACCGTTTTCTTCTGCATGATGGTGTCAAAGAAAGCATTTTGGCAGTTAAAATGATTTATCACTTTGCTCAAGTCTGTTACATATATATTTTTTATAGGGAGCCACTGTCATCAAACTACAGACCTTAGTATTGCCGATAGCGAATAAATTGATATGTTCATGTTGCTCACGATTTCTCATAATAAGGCCTAAGAGGTGTAGTTATCCCATTTATATGTTCATCTTTTCTCACAGAAGACAATCCATTGTCATTTATTCATCTGTTATTTGTTTTTGTTTTCATGGAAATAATATACCAAGGCCTC] [+] EMBL OSS1808A [ AGTCGCGAGCAGATCAAAAACCCCATCGCCGCGGCGATCACCGGAGGGACCAGGCCGGGCGGCCATCCGTACTCCGCCGCGATGATGAACGACGGCGATGTGGCGCGGCAGCTGAAGCAGATGACGGACTTCATCCGCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGGAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATCAGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAATTGAATACTCAAAGCAGCTCAATGCTTCCCGACTTGAAGTTCTGCAAGCTCAAGATGATTTAGCGATGTCTATGTTGGAGGCAGCAGGGAAAGAGCTACTGTACATAACCCGAGATCACCATGTATACAAGAATCTTCTTAGGATATTTATTGTTCAGAGCTTGCTGCGTTTGAAGGAGCCAGCTGTGATTCTGCGCTGCAGGAAGGAGGATCGTGAGCTTGTTGAATCAGTTTTGGAGTCTGCAAAGAATGAATATGCAGACAAAGCAAATATATATCCTCCTGAAATAATGGTAGACCGTAATGTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTGCTCTGGTGGAGTTGTGCTAGCTTNCCGAGATGGNAAGATAAGTCTGTG AAATACATTGGATGCTAGACTAGAANGTGGTTTTCAGAAAGAAGCTACCAGAGATTCGTCGAAGCCTTTCNTTGGGCAAGTAACTGCTTNAACCGATTCATAAATACcanggt ] [+] EMBL OSS1834A [ AGTCGCGAGCAGATCAAAAACCCCATCGCCGCGGCGATCACCGGAGGGACCAGGCCGGGCGGCCATCCGTACTCCGCCGCGATGATGAACGACGGCGATGTGGCGCGGCAGCTGAAGCAGATGACGGACTTCATCCGCCAGGAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGGAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATCAGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAATTGAATACTCAAAGCAGCTCAATGCTTCCCGACTTGAAGTTCTGCAAGCTCAAGATGATTTAGCGATGTCTATGTTGGAGGCAGCAGGGAAAGAGCTACTGTACATAACCCGAGATCACCATGTATACAAGAATCTTCTTAGGATATTTATTGTTCAGAGCTTGCTGCGTTTGAAGGAGCCAGCTGTGATTCTGCGCTGCAGGAAGGAGGATCGTGAGCTTGTTGAATCAGTTTTGGAGTCTGCAAAGAATGAATATGCAGACNAAGCNAATATATATCCTCCTGAAATAATGGTAGACCGTAATGTCTATCTG CTCCTGCTNCCAGTCATTATGANGCACATGGANCCTtcc ] [+] EMBL OSS1996A [ AGTCG GAGCAGATCAAAAACCCCATCGCCGCGGC ATCACCGGA GGACCAGGCCGGGCGG CATCCGTACTCCGCCGCGATGATGAACGACGGCGATGTGGCGCGGCA NTGAAGCAGATGACGGACTTCATCCGCCA GAGGCCGTCGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGGAATTTCAAATCGAGAAACTACAGCTGGTGGAAGCTGAAAAGAAGAGGATCAGGTTGGAATTTGAACGGAACGAGAAGCAAGGTGATATCAAGAAGAAAATTGAATACTCAAAGCAGCTCAATGCTTCCCGACTTGAAGTTCTNC ANCTCAA ] consensusID : consensus_9516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence [AGGATGAGACAGGGGGGATCGTGAGCTTGTTGAATNGTTTTGGACTCTGCAAAGAATGAATATGCAGACAAAGCAAATATATATCCTCCTGAAATAATGGTAGACCGTAATGTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTGCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTGTGAAAATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAGGAAGCTACCAGAGATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATACAGGATGCTGCACAATACCGTTTTCTTCTGCATGATGGTGTCAAAGAAAGCATTTTGGCAGTTAAAATGATTTATCACTTTGCTCAAGTCTGTTACATATAAATTTTTATAGGGAGCCACTGTCATCAAACTACAGACCTTAGTATTGCCGATAGCGAATAAATTGATATGTTCATGTTGCTCACGATTTCTCATAATAAGGCCTAAGAGGTGTAGTTATCCCATTTATATGTTCATCTTTTCTCACAGAAGACAATCCATTGTCATTTATTCATCTGTTATTTGNTTTTGGTTTCATGGAAATAATATACCAAGGCCTCTCTTAGAATGAATAAATAGAAGATTTGGAAGTGCCCTGCAGTGCAAGATAAACTGAAATTCTACAGATGCATCATTGGNCTAGNTTTATCTGACATCCCTTTCTCTAAGAATTCCCCAACCCAGGCTTTTGGCCGCTTGTACAGAGTTTAATGAAGTTGAACTGCACTGCTGGTTTC] [+] EMBL CA765590 [AGGATGAGACAGGGGGGATCGTGAGCTTGTTGAATNGTTTTGGACTCTGCAAAGAATGAATATGCAGACAAAGCAAATATATATCCTCCTGAAATAATGGTAGACCGTAATGTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACATGGACCCTCCTGCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTGTGAAAATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAGGAAGCTACCAGAGATTCGTCGAAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATACAGGATGCTGCACAATACCGTTTTCTTCTGCATGATGGTGTCAAAGAAAGCATTTTGGCAGTTAAAATGATTTATCACTTTGCTCAAGTCTGTTACATATAAATTTTTATAGGGAGCCACTGTCATCAAACTACAGACCTTAGTATTGCCGATAGCGAATAAATTGATATGTTCATGTTGCTCACGATTTCTCATAATAAGGCCTAAGAGGTGTAGTTATCCCATTTATATGTTCATCTTTTCTCACAGAAGACAATCCATTGTCATTTATTCATCTGTTATTTGNTTTTGGTTTCATGGAAATAATATACCAAGGCCTCTCTTAGAATGAATAAATAGAAGATTTGGAAGTGCCCTGCAGTGCAAGATAAACTGAAATTCTACAGATGCATCATTGGNCTAGNTTTATCTGACATCCCTTTCTCTAAGAATTCCCCAACCCAGGCTTTTGGCCGCTTGTACAGAGTTTAATGAAGTTGAACTGCACTGCTGGTTTC] consensusID : consensus_9516#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [ACCCNCCTGCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTNTGAAAATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTNCCAGAGATTCGTCGAAGCCTTNTTGGGCAGGTAGCTGCTTGNCCGATTCATAAATACAGGATGCTGCACAATNCCGTTTTCTTCTGCATGATGGTGTCAAAGAAAGCATTTTGGCAGTTAAAATGATTTATCACTTTGCTCAAGTCTGTTACATATATATTTTTTATAGGGNGCCNCTGTCATCAAACTACAGNCCTTAGTATTGCCGATAGCGAATAAATTGATATGTTCATGTTGCTCNCGATTTCTCATAATAAGGCCTAAGAGGTGTAGTTATCCCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU083572 [ACCCNCCTGCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTNTGAAAATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTNCCAGAGATTCGTCGAAGCCTTNTTGGGCAGGTAGCTGCTTGNCCGATTCATAAATACAGGATGCTGCACAATNCCGTTTTCTTCTGCATGATGGTGTCAAAGAAAGCATTTTGGCAGTTAAAATGATTTATCACTTTGCTCAAGTCTGTTACATATATATTTTTTATAGGGNGCCNCTGTCATCAAACTACAGNCCTTAGTATTGCCGATAGCGAATAAATTGATATGTTCATGTTGCTCNCGATTTCTCATAATAAGGCCTAAGAGGTGTAGTTATCCCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9516#0 CTCGGCGCATCCACGCAACCCACCCGTCGCGAGTCGCGAGCAGATCAAAAACCCCATCGC 60 consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 ------------------------------------------------------------ consensus_9516#0 CGCGGCGATCACCGGAGGGACCAGGCCGGGCGGCCATCCGTACTCCGCCGCGATGATGAA 120 consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 ------------------------------------------------------------ consensus_9516#0 CGACGGCGATGTGGCGCGGCAGCTGAAGCAGATGACGGACTTCATCCGCCAGGAGGCCGT 180 consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 ------------------------------------------------------------ consensus_9516#0 CGAGAAGGCCGCCGAGATCGAGGCCGCCGCCGCCGAGGAATTTCAAATCGAGAAACTACA 240 consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 ------------------------------------------------------------ consensus_9516#0 GCTGGTGGAAGCTGAAAAGAAGAGGATCAGGTTGGAATTTGAACGGAACGAGAAGCAAGG 300 consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 ------------------------------------------------------------ consensus_9516#0 TGATATCAAGAAGAAAATTGAATACTCAAAGCAGCTCAATGCTTCCCGACTTGAAGTTCT 360 consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 ------------------------------------------------------------ consensus_9516#0 GCAAGCTCAAGATGATTTAGCGATGTCTATGTTGGAGGCAGCAGGGAAAGAGCTACTGTA 420 consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 ------------------------------------------------------------ consensus_9516#0 CATAACCCGAGATCACCATGTATACAAGAATCTTCTTAGGATATTTATTGTTCAGAGCTT 480 consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 ------------------------------------------------------------ consensus_9516#0 GCTGCGTTTGAAGGAGCCAGCTGTGATTCTGCGCTGCAGGAAGGAGGATCGTGAGCTTGT 540 consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 ------------------------------AGGATGAGACAGGGGGGATCGTGAGCTTGT 30 consensus_9516#0 TGAATCAGTTTTGGAGTCTGCAAAGAATGAATATGCAGACAAAGCAAATATATATCCTCC 600 consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 TGAATN-GTTTTGGACTCTGCAAAGAATGAATATGCAGACAAAGCAAATATATATCCTCC 89 consensus_9516#0 TGAAATAATGGTAGACCGTAATGTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACA 660 consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 TGAAATAATGGTAGACCGTAATGTCTATCTGCCTCCTGCTCCCAGTCATTATGAGGCACA 149 consensus_9516#0 TGGACCCTCCTGCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTGTGA 720 consensus_9516#2 ---ACCCNCCTGCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTNTGA 57 consensus_9516#1 TGGACCCTCCTGCTCTGGTGGAGTTGTGCTAGCTTCCCGAGATGGAAAGATAGTCTGTGA 209 **** ************************************************ *** consensus_9516#0 AAATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTACCAGAGATTCGTCG 780 consensus_9516#2 AAATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAAGAAGCTNCCAGAGATTCGTCG 117 consensus_9516#1 AAATACATTGGATGCTAGACTAGAGGTGGTTTTCAGAAGGAAGCTACCAGAGATTCGTCG 269 ************************************** ****** ************** consensus_9516#0 AAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATACAGGATGCTGCACAATAC 840 consensus_9516#2 AAGCCTTNTTGGGCAGGTAGCTGCTTGNCCGATTCATAAATACAGGATGCTGCACAATNC 177 consensus_9516#1 AAGCCTTCTTGGGCAGGTAGCTGCTTGACCGATTCATAAATACAGGATGCTGCACAATAC 329 ******* ******************* ****************************** * consensus_9516#0 CGTTTTCTTCTGCATGATGGTGTCAAAGAAAGCATTTTGGCAGTTAAAATGATTTATCAC 900 consensus_9516#2 CGTTTTCTTCTGCATGATGGTGTCAAAGAAAGCATTTTGGCAGTTAAAATGATTTATCAC 237 consensus_9516#1 CGTTTTCTTCTGCATGATGGTGTCAAAGAAAGCATTTTGGCAGTTAAAATGATTTATCAC 389 ************************************************************ consensus_9516#0 TTTGCTCAAGTCTGTTACATATATATTTTTTATAGGGAGCCACTGTCATCAAACTACAGA 960 consensus_9516#2 TTTGCTCAAGTCTGTTACATATATATTTTTTATAGGGNGCCNCTGTCATCAAACTACAGN 297 consensus_9516#1 TTTGCTCAAGTCTGTTACATATAAATTTTT-ATAGGGAGCCACTGTCATCAAACTACAGA 448 *********************** ****** ****** *** ***************** consensus_9516#0 CCTTAGTATTGCCGATAGCGAATAAATTGATATGTTCATGTTGCTCACGATTTCTCATAA 1020 consensus_9516#2 CCTTAGTATTGCCGATAGCGAATAAATTGATATGTTCATGTTGCTCNCGATTTCTCATAA 357 consensus_9516#1 CCTTAGTATTGCCGATAGCGAATAAATTGATATGTTCATGTTGCTCACGATTTCTCATAA 508 ********************************************** ************* consensus_9516#0 TAAGGCCTAAGAGGTGTAGTTATCCCATTTATATGTTCATCTTTTCTCACAGAAGACAAT 1080 consensus_9516#2 TAAGGCCTAAGAGGTGTAGTTATCCCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 417 consensus_9516#1 TAAGGCCTAAGAGGTGTAGTTATCCCATTTATATGTTCATCTTTTCTCACAGAAGACAAT 568 ******************************* * * * * ** * ** consensus_9516#0 CCATTGTCATTTATTCATCTGTTATTTGTTTTTGTTTTCATGGAAATAATATACCAAGGC 1140 consensus_9516#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 447 consensus_9516#1 CCATTGTCATTTATTCATCTGTTATTTGNTTTTGGTTTCATGGAAATAATATACCAAGGC 628 * * * * * consensus_9516#0 CTC--------------------------------------------------------- 1143 consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 CTCTCTTAGAATGAATAAATAGAAGATTTGGAAGTGCCCTGCAGTGCAAGATAAACTGAA 688 consensus_9516#0 ------------------------------------------------------------ consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 ATTCTACAGATGCATCATTGGNCTAGNTTTATCTGACATCCCTTTCTCTAAGAATTCCCC 748 consensus_9516#0 ------------------------------------------------------------ consensus_9516#2 ------------------------------------------------------------ consensus_9516#1 AACCCAGGCTTTTGGCCGCTTGTACAGAGTTTAATGAAGTTGAACTGCACTGCTGGTTTC 808 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||