These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9523#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 719 fasta sequence [TTTTTTTTTTTTTTTTTTTCATAACAATCAATAAATCCTTGTCATTAACCGGACGACAC-GGTAATATCTCACACTTGATGACC-GACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGTATATATATGCTTCTTGTGTACTCTGCTGTATCGAATTATCATTTGGTTCATCGATCCATGGAGAGAAATGTTTTCTTGNGTGTTCGATCGCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTCGTCGCGTGCCTGGATGAAGACGATGGCGGCGGCGT-AGTGCGCGAGCGCGCCGGCGATGACGAGCGCGTGGAAGATCTGGTGGCTGTGGCCGCACAGGTCGAACATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAGAACGCGGTGCCGGCGAGGTAGGACGCCGCCATGGCGCCCTCGTACGCCAGCGTCACGTTCCGGCGGGGCTCGTGCCAGTTGACGGCGACGGCGTGGGCGGCGGGGACGACGCCGGAGAGGCCCATGGCGACGAACAGCAGCGCGCGGTGGGCGCGGTACCTCGCCGCGCTCAGCCTGGGCGACATGAGCGCGTACACGGTGGCCACCCCGGCGGCGGTGATCGCCGACAGGTACACCACCTGCCACCGCGGCTCGCACTGGAAGATGTATTAGATGG] [-] EMBL AU086005 [TTTTTTTTTTTTTTTTTTTTTTAACAATCAATAAATCCTTGTCATTAACCGGACGACAC GGTAATATCTCACACTTGATGACC GACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGTATATATATGCTTCTTGTGTACTCTGCTGTATCGAATTATCATTTGGTTCATCGATCCATGGAGAGAAATGTTTTCTTGNGTGTTCGATCGCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTCGTCGCGTGCCTGGATGAAGACGATGGCGGCGGCGT AGTGCGCGAGCGCNCCGGCGATGACGAGCGCGTGGAAGATCTGGTGGCTGTGGCCGCACAGGTCGAACA ] [-] EMBL AU197945 [ TTTTTTTTTTTTTTCANAACAATCAATAAATCCTTGTCATTAACCGGACGACAC GGTAATATCTNACACTTGATGACCGGACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGNTGNATATATATGCTTCTTGNGTACTCTGCTGNATCGAATTATCATTNGGTTCATCGATCCATGGANAG ] [-] EMBL AU174053 [ TTTTTTTTTTTCATAACAATCAATAAATCCTTGTCATTAACCGGACGACACGGGTAATATCTCACACTTGATGACC GACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGTATATATATGCTTCTTGGGTACTCTGCTGTATCGAATTATCATTNGGTTCATCGATCCATGGANAGAAATGTTTTCTTGNGTGTTCNATCGCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTCGTCGCGTGCCTGGATGAAAACNATGGCGGCGGCGT ANTGCGCGAGCGCGCCGGCGATGACAAGCGCGTGG ] [+] EMBL CB657885 [ AACAATCAATAAATCCTTGTCATTAACCGGACCATTC GGTAATATCTCACACTTGATGACC GACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGTATATATATGCTTCTTGTGTACTCTGCTGTATCGAATTATCATTTGGTTCATCGATCCATGGAGAGAAATGTTTTCTTGTGTGTTCGATCGCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTCGTCGCGTGCCTGGATGAAGACAATGGCGGCGGCGT AGTGCGCGAGCGCGCCGGCGATGACGAGCGCGTGGAAAATCTGGTGGCTGTGGCCGCACAGGTCGAACATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAGAACGCGGTGCCGGCGAGGTAGGACGCCGCCATGGCGCCCTCGTACGCCAGCGTCACGTTCCGGCGGGGCTCGTGCCAGTTGACGGCGACGGCGTGGGCGGCGGGGACGACGCCGGAGAGGCCCATGGCGACGAACAGCAGCGCGCGGTGGGCGCGGTACCTCGCCGCGCTCAGCCTGGGCGACATGAGCGCGTACACGGTGGCCACCCCGGCGGCGGTGATCGCCGACAGGTACACCACCTGCCACCGCGGCTCGCACTGGAAGATGTATTAGATGG] [-] EMBL OSS10977A [ TAACCGGACGACAC GGTAATATCTCACACTTGATGACC GACNCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGTATATATATGCTTCTTGTGTACTCTGCTGTATCGAATTATCATTTGGTTCATCGATCCATGGAGAGAAATGTTTTCTTGTGTGTTCGATCGCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTCGTCGCGTGCCTGGATGAAGACGATGGCGGCGGCGTAAGT C CGAGCGCGCCGGCGATGACGAGCGCGTGGAAGATCTGGTGGCTGTGGCCGCACAGGTCGAACA ] consensusID : consensus_9523#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [TTACAACGAACGAATAAGCAACAGTTGCTTCTTGGATGTACAAGTTTCCACATCATAACAATCAATAAATCCTTGTCATTAACCGGACGACACGGGAATATCTCACACTTGATGACCGACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCCCAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGGATATATATGCTTCTTGGGGACTCTGCTGGATCGAATTATCATTTGGTTCATCCATCCATGGAGAGAAATGTTTTCTTGTGGGTTCCATCGCTAACTTAACTATGGGGCCGGGCAGCCCATCTCGTCCCGTGCCTGGATGAAAACCATGGCGGCGGCGTAATGCGCCAACGCCCCCGCTATGACGAGCGCGTGGAAAATCTGGTGGCTGTGGCCGCACAGGTCTAAAATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAAAACCCCG] [+] EMBL CB643164 [TTACAACGAACGAATAAGCAACAGTTGCTTCTTGGATGTACAAGTTTCCACATCATAACAATCAATAAATCCTTGTCATTAACCGGACGACACGGGAATATCTCACACTTGATGACCGACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCCCAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGGATATATATGCTTCTTGGGGACTCTGCTGGATCGAATTATCATTTGGTTCATCCATCCATGGAGAGAAATGTTTTCTTGTGGGTTCCATCGCTAACTTAACTATGGGGCCGGGCAGCCCATCTCGTCCCGTGCCTGGATGAAAACCATGGCGGCGGCGTAATGCGCCAACGCCCCCGCTATGACGAGCGCGTGGAAAATCTGGTGGCTGTGGCCGCACAGGTCTAAAATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAAAACCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9523#0 ----------------------------------TTTTTTTTTTTTTTTTTTTCATAACA 26 consensus_9523#1 TTACAACGAACGAATAAGCAACAGTTGCTTCTTGGATGTACAAGTTTCCACATCATAACA 60 * * *** ******** consensus_9523#0 ATCAATAAATCCTTGTCATTAACCGGACGACACGGTAATATCTCACACTTGATGACCGAC 86 consensus_9523#1 ATCAATAAATCCTTGTCATTAACCGGACGACACGGGAATATCTCACACTTGATGACCGAC 120 *********************************** ************************ consensus_9523#0 TCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACT 146 consensus_9523#1 TCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCCCAAAAACAAAACCACT 180 ******************************************* **************** consensus_9523#0 CAAATCAATTAATTCGATCGTCTACCGCTGTATATATATGCTTCTTGTGTACTCTGCTGT 206 consensus_9523#1 CAAATCAATTAATTCGATCGTCTACCGCTGGATATATATGCTTCTTGGGGACTCTGCTGG 240 ****************************** **************** * ********* consensus_9523#0 ATCGAATTATCATTTGGTTCATCGATCCATGGAGAGAAATGTTTTCTTGNGTGTTCGATC 266 consensus_9523#1 ATCGAATTATCATTTGGTTCATCCATCCATGGAGAGAAATGTTTTCTTGTGGGTTCCATC 300 *********************** ************************* * **** *** consensus_9523#0 GCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTCGTCGCGTGCCTGGATGAAGACGATGG 326 consensus_9523#1 GCTAACTTAACTATGGGGCCGGGCAGCCCATCTCGTCCCGTGCCTGGATGAAAACCATGG 360 **** **** ****** ******************** ************** ** **** consensus_9523#0 CGGCGGCGTAGTGCGCGAGCGCGCCGGCGATGACGAGCGCGTGGAAGATCTGGTGGCTGT 386 consensus_9523#1 CGGCGGCGTAATGCGCCAACGCCCCCGCTATGACGAGCGCGTGGAAAATCTGGTGGCTGT 420 ********** ***** * *** ** ** ***************** ************* consensus_9523#0 GGCCGCACAGGTCGAACATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAGAACG 446 consensus_9523#1 GGCCGCACAGGTCTAAAATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAAAACC 480 ************* ** ************************************** *** consensus_9523#0 CGGTGCCGGCGAGGTAGGACGCCGCCATGGCGCCCTCGTACGCCAGCGTCACGTTCCGGC 506 consensus_9523#1 CCG--------------------------------------------------------- 483 * * consensus_9523#0 GGGGCTCGTGCCAGTTGACGGCGACGGCGTGGGCGGCGGGGACGACGCCGGAGAGGCCCA 566 consensus_9523#1 ------------------------------------------------------------ consensus_9523#0 TGGCGACGAACAGCAGCGCGCGGTGGGCGCGGTACCTCGCCGCGCTCAGCCTGGGCGACA 626 consensus_9523#1 ------------------------------------------------------------ consensus_9523#0 TGAGCGCGTACACGGTGGCCACCCCGGCGGCGGTGATCGCCGACAGGTACACCACCTGCC 686 consensus_9523#1 ------------------------------------------------------------ consensus_9523#0 ACCGCGGCTCGCACTGGAAGATGTATTAGATGG 719 consensus_9523#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||