These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 604 fasta sequence [CACACACCCAAACACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACGTACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGCGTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGGACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGCAGGCAGCAGGCCGTGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCGCTGCAGCCTGCAGCGGCGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAAGAGGAGGAGCTGAGGACGGTCATGTACCTCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGAGTTTTGCACAAGATGTATATATACGATATATATGATATGGCAACTAATCAAGAGCTTTGGTNATG--NACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK062619 [CACACACCCAAACACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACGTACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGCGTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGGACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGCAGGCAGCAGGCCGTGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCGCTGCAGCCTGCAGCGGCGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAAGAGGAGGAGCTGAGGACGGTCATGTACCTCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGAGTTTTGCACAAGATGTATATATACGATATATATGATATGGCAACTAATCAAGAGCTTT ] [+] EMBL OS0979A [ AAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACGTACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGCGTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGGACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGNCAGGCAGCAGGCCGTGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCGTTGCAGCCTGCATCGGNGGCGGCGTTGAGGNGGANAGCNCAGannangag ] [+] EMBL C98184 [ GCAGCGGCGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAAGAGGAGGAGCTGAGGACGGTCATGTACCTCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGAGTTTTGCACAAGATGTATATATACGATATATATGATATGGCAACTAATCAAGAGCTTTGGTNATG NACAAAAAAAAAA ] [+] EMBL CF316882 [ GGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGAGTTTTGCACAAGATGTATATATACGATATATATGATATGGCAACTAATCAAGAGCTTTGGTTATGCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 523 fasta sequence [ACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACGTACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGCGTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGGACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGCCAGGCAGCAGGCCGTGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCCTGCAGCCTGCAGGGCCGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTTCAAGATGGAACTTCTTGTATATTCAGACGAGTTTTTCACAAGATGTATTATNTTACGGTATATATGATATGGCAACTAATCAAGAGCTTTGGTTATGCACAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL OSS15886A [ACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACGTACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGCGTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGGACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGCCAGGCAGCAGGCCGTGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCCTGCAGCCTGCAGGGCCGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTTCAAGATGGAACTTCTTGTATATTCAGACGAGTTTTTCACAAGATGTATTATNTTACGGTA ] [+] EMBL AU089783 [ nCAGCCTGCAGCGGCGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGTGTTAGGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGAGTTTTGCACAAGATGTA TAT ATACGATATATATGATATGGCAACTAATCAAGAGCTTTGGTTATGCACAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9529#0 CACACACCCAAACACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACG 60 consensus_9529#1 -------------ACAAACAAGAGCATCATCTGAGCGTGCAGAGCTCACACAAACACACG 47 *********************************************** consensus_9529#0 TACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGC 120 consensus_9529#1 TACAGATCGTTCGTACAAGTGCAACAAACACATGGCGAGCGGCGGAGGGAAGGCGAAGGC 107 ************************************************************ consensus_9529#0 GTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGG 180 consensus_9529#1 GTCGTCGTGGGCGGCGGCGATGAGCGTGGGCACGGTGGAGGCGCTCAAGGACCAGGCCGG 167 ************************************************************ consensus_9529#0 ACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGC-AGGCAGCAGGCCG 239 consensus_9529#1 ACTGTGCCGCTGGAACTACGCGTTCCGGACGCTCCAGCAGCGCGGCCAGGCAGCAGGCCG 227 ********************************************** ************* consensus_9529#0 TGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGCGCTGCAGCCTGCAGCGG 299 consensus_9529#1 TGGCCGGGACGAGCGGCGCCAAGAGCGGCGGCGGCGCGCGTGC-CTGCAGCCTGCAGGGC 286 ******************************************* ************* * consensus_9529#0 CGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAAGAGGAGGAGCTGAGGACGGTCATGTACC 359 consensus_9529#1 CGGCGGCGGCGAGGAGGAAAGCCCAGCAGCAA---------------------------- 318 ******************************** consensus_9529#0 TCAGCAACTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGT 419 consensus_9529#1 -------CTGGGGCCCAAACAACTAATTGTTACTGAGCTGATCAGTCAGATTAGGATCGT 371 ***************************************************** consensus_9529#0 GTTAGGTGGTTAGATTGGTTTTGGTGCTTGCAAGATGGAACTGCTTGTATATGCAGACGA 479 consensus_9529#1 GTTAGGTGGTTAGATTGGTTTTGGTGCTTTCAAGATGGAACTTCTTGTATATTCAGACGA 431 ***************************** ************ ********* ******* consensus_9529#0 GTTTTGCACAAGATGTAT-ATAT-ACGATATATATGATATGGCAACTAATCAAGAGCTTT 537 consensus_9529#1 GTTTTTCACAAGATGTATTATNTTACGGTATATATGATATGGCAACTAATCAAGAGCTTT 491 ***** ************ ** * *** ******************************** consensus_9529#0 GGTNATGNACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 597 consensus_9529#1 GGTTATGCACAAAAAAAAAAAAAAAAAAAAAA---------------------------- 523 *** *** ************************ consensus_9529#0 AAAAAAA 604 consensus_9529#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||