These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 602 fasta sequence [GGTGAGAATATCTCCAGAGTTGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGAGGTAGGGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCTCTGGACGGCGACATGACGGTGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCGACGGGCGCATCAGCCGCGACGAGCTGCGGCGCGCGATGCGCGCCATCCGGGCGCGG-TTCACGGGGTGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGGCGACGGCTACATCGACGACGGCGAGGTGGACGGCCTCATCGAGTACGCGCAG-AAGAGCCTCGGCCTCAGGATCGTCGCCTACTAGCTAGCTAATCCAAGCCATGGCTGCTAGCTCCTTTGCAGC-TCGATCGGCTGGCCGTTTGCG-ACCTAAATAATCTCCATCTTGATCGCTTGTCACTTCGTCTTGCTTTCTTGTACTTAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTTTGAGAAATCAATTGACCCATGTATGTTCTTGATCGACGAAAAAAAAAA] [+] EMBL C26905 [GGTGAGAATATCTCCAGAGTTGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGA GTAGGGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCTCTGGACGGCGACATGACGGTGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCNACGGGCGCATCANCCGCGACGAGCTGCGGCGCGCNATGC NANTNCCCGGGCGGGGTTTCACGGGGTGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGGCGACGGCTACATCGACGACGGCGAGGTTGACGGCCTCATCGAGTACGCGCAGAAAGAACCTCGGCCTCAAGATCGTngg ] [-] EMBL BU672925 [ AGAGTTGGTTGATCGGAGCAAGAGCGAGCTTACCGGCGACCGGAGGTAGGGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCGCTGGACGGCGACATGACGGTGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCGACGGGCGCATCAGCCGCGACGAGCTGCGGCGCGCGATGCGCGCCATCCGGGCGCGG TTCACGGGGTGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGGCGACGGCTACATCGACGACGGCGAGGTGGACGGCCTCATCGAGTACGCGCAG AAGAGCCTCGGTCTCAGGATCGTCGCCTACTAGCTAGCTAATCCAAGCCATGGCTGCTAGCTCCTTTGCAGC TCGATCGGCTGGCCGTTTGCG ACCTAAATAATCTCCATCTTGATCGCTTGTCACTTCGTCTTGCTTTCTTGTACTTAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTT ] [+] EMBL AU092671 [ GGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGAAGGTAGGGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCTCTGGACGGCGACATGACGGTGGACGAGTTCAAGGAGTGGCTNAGGCGGTTCGATGTCGACCGCGACGGGCGCATCAGCCGCGACGAGCTGCGGCGCGCGATGCGCGCCATCCGGGCGCGG TTCACGGGGTGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGGCGACGGCTACATCGACGACGGCGAGGTGGACGGCCTCATCGAGTACGCGCAG AAGAGCCTCGGCCTCAGGATCGTCGCCTACTAGCTAGCTAATCCAAGCCATGGCTGCTAGCTCCTTTGCAGC TCGATCGGCTGGCCGTTTGCG ACCTAAATAATCTCCATCTTGATCGCTTGTCACTTCGTCTTGCTTTCTTGTACTTAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTTTGAGAAATCAATTGACCCATGTATGTTCTTGATCGACGAAAAAAAAAA] [-] EMBL CB966257 [ TAGCTCCTTTGCAGCNTCGATCGGCTGGCCGTTTGCGNACCTAAATAATCTCCATCTTGATCGCTTGTCACTTCGTCTTGCTTTCTTGTACTTAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTT ] consensusID : consensus_9542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [TGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGAGTAGGNGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCTCTGGACGGCGACATGACGGTGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCAACGGGCGCATCACCCGCNACGAGCTGCGGCGCGCAATGCCAATNCCNGGGCNGGTTTNACGGGGTGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGCGACGGCTACATCGACGACGGCGAGGTNGACGGCCTCATCGAGTACGCGCAGAAGAAGCCTCGGCCTCAGGNTCGTCGCCTACTTAGTTAGTAATCCAAGCCATNGCTTCTAGTTCCTTTTCAA] [+] EMBL C27770 [TGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGAGTAGGNGATGGCGATCAGGAGCATGACGGTGGCGACGACGACGCGGTCTCTGGACGGCGACATGACGGTGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCAACGGGCGCATCACCCGCNACGAGCTGCGGCGCGCAATGCCAATNCCNGGGCNGGTTTNACGGGGTGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGCGACGGCTACATCGACGACGGCGAGGTNGACGGCCTCATCGAGTACGCGCAGAAGAAGCCTCGGCCTCAGGNTCGTCGCCTACTTAGTTAGTAATCCAAGCCATNGCTTCTAGTTCCTTTTCAA] consensusID : consensus_9542#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [TCGGCGAGGTGGTCGGCCTCATCGAGTACGCGCAGAAGAGCCTCGGTCTCAGGATCGTCGCCTACTAGCTAGCTGAATCCAAGCCATGGCTGCTGAGCTGCCTTTGCAGCTGCGATGCGGCTGGCCGTTTGCGACCTGAAATGAATGCTGCCATGCTTGGATGCGCTTGTGCACTGTCGTGCTTGCTTTGCTTGTGACTTGAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTTT] [-] EMBL CB965397 [TCGGCGAGGTGGTCGGCCTCATCGAGTACGCGCAGAAGAGCCTCGGTCTCAGGATCGTCGCCTACTAGCTAGCTGAATCCAAGCCATGGCTGCTGAGCTGCCTTTGCAGCTGCGATGCGGCTGGCCGTTTGCGACCTGAAATGAATGCTGCCATGCTTGGATGCGCTTGTGCACTGTCGTGCTTGCTTTGCTTGTGACTTGAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9542#0 GGTGAGAATATCTCCAGAGTTGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGAG 60 consensus_9542#1 --------------------TGGTTGATCGGAGCAAGAGCGAGCTAACCGGCGACCGGAG 40 consensus_9542#2 ------------------------------------------------------------ consensus_9542#0 GTAGGGATGGCGATCAGGAGCATGACGGTGGCGACGACGA--CGCGGTCTCTGGACGGCG 118 consensus_9542#1 TAGGNGATGGCGATCAGGAGCATGACGGTGGCGACGACGA--CGCGGTCTCTGGACGGCG 98 consensus_9542#2 TCGGCGA-GGTGGTCGGCCTCATCGAGTACGCGCAGAAGAGCCTCGGTCTCAGGATCGTC 59 * ** ** * ** * *** * *** ** ** * ******* *** * consensus_9542#0 ACATGACGG-TGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCGACGGG 177 consensus_9542#1 ACATGACGG-TGGACGAGTTCAAGGAGTGGCTGAGGCGGTTCGATGTCGACCGCAACGGG 157 consensus_9542#2 GCCTACTAGCTAGCTGAATCCAAGCCATGGCTGCTGAGCTGCCTTTGCAGCTGCGATG-- 117 * * * * * ** * **** ****** * * * * * * * ** * * consensus_9542#0 CGCATCAGCCGCGACGAGCTGCGGCGCGCGATGCGCGCCATCCGGGCGCGGTTCACGGGG 237 consensus_9542#1 CGCATCACCCGCNACGAGCTGCGGCGCGCAATGC-CAATNCCNGGGCNGGTTTNACGGGG 216 consensus_9542#2 CGGCTGGCCGTTTGCGACCTGAAATGAATGCTGC--CATGCTTGGATGCGCTTGT--GCA 173 ** * * *** *** * *** ** * ** * consensus_9542#0 TGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACGGCGACGGCTACATCGACGAC 297 consensus_9542#1 TGGAGGAGCAGGCAGGGCATCAGCTACGCCGACGCGGACG-CGACGGCTACATCGACGAC 275 consensus_9542#2 CTGTCGTGCTTGCTTTGCTT--GTGACTTGAAATTAATCAACTCATGTACTGTGTGTGCT 231 * * ** ** ** * * ** * * * * * * consensus_9542#0 GGCGAGGTGGACGGCCTCATCGAGT-ACGCGCAGAAGA-GCCTCGGCCTCAGGATCGTCG 355 consensus_9542#1 GGCGAGGTNGACGGCCTCATCGAGT-ACGCGCAGAAGAAGCCTCGGCCTCAGGNTCGTCG 334 consensus_9542#2 TGTGATCTGCGCTGTATTATTAATTGATGTATCACTGATTGCTCTTT------------- 278 * ** * * * * ** * * * * ** *** consensus_9542#0 CCTACTAGCTAGCTAATCCAAGCCATGGCTGCTAGCTCCTTTGCAGCTCGATCGGCTGGC 415 consensus_9542#1 CCTACTTAGTTAGTAATCCAAGCCATNGCTTCTAGTTCCTTTTCAA-------------- 380 consensus_9542#2 ------------------------------------------------------------ consensus_9542#0 CGTTTGCGACCTAAATAATCTCCATCTTGATCGCTTGTCACTTCGTCTTGCTTTCTTGTA 475 consensus_9542#1 ------------------------------------------------------------ consensus_9542#2 ------------------------------------------------------------ consensus_9542#0 CTTAAATTAATCAACTCATGTACTGTGTGTGCTTGTGATCTGCGCTGTATTATTAATTGA 535 consensus_9542#1 ------------------------------------------------------------ consensus_9542#2 ------------------------------------------------------------ consensus_9542#0 TGTATCACTGATTGCTCTTTGAGAAATCAATTGACCCATGTATGTTCTTGATCGACGAAA 595 consensus_9542#1 ------------------------------------------------------------ consensus_9542#2 ------------------------------------------------------------ consensus_9542#0 AAAAAAA 602 consensus_9542#1 ------- consensus_9542#2 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||