These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1579 fasta sequence [CCTCGTAGGCTGATTGGTTTGAATACTTGAATGGTCAAGAGAATGCAAAATTCTTTATGAATGGAACCGTGCAGGGTAACGTACTTTTCTTGAGCACATCCAGCAGTAGCATCTTGGTATCAGTGAAGAACTGTGTATCCGTTTCATACCTCAGTGTGCACCACACCCCAAGAATGGCCGCTCCCATCTGGGTAGTGCTAATCTTGCTCTGCCTGCCTGAGATGATACCATCCAGGCAGTTCATGCATTGCTCCGATGGCATGCCCTGCATGCACTGCACTAGCCCATACACCGTCTGTCCTGTCTCCTCAAACCTCTGTTTGCCTACTGCATACCTCTCTGGTCGACTCACTGCAGCATCAGTAAGTGCACGCAGCACCTTGGTGACAAGATCCTCAAATTGCTTAGCCACAGAAGCTGTCACAGCATTCAGGTTAGTATTCACAGTGCACTCCGGCACATTTGTGAAGCTGGAGATAAAATCCTGGTTGGAGAAGTGTATCCTGGCCTGGTCTTGGTTGTAATAGTAGGTCACCTTCTTGGTCATGGCCTTGGGAGAGTAAGAGTTGCTGTTTTTGCTGTTGATGGCTGCATCAAGGGCCTCAGTTAGGTGCTTGCGACAATCGGAGCCATCAGAATCGCCTCGACAAGAAACTGCACCATAGACTTTGTCCAGGCCTGTGCCGGCCATGCCAGTAGCTGAGTGCAGCTCTGTGGCATTAGCAATGAGCGTTGCGGCAAGGGAGATAAGGTTGGATTTGTAGGTACTGTTTGGCATGTAAATGGCGCCATTATAGTCACTGCAGAGTTCCTGGCCGACAGATGGTGCTGGGCAGGAGATGAAGAGAACTAGGAGAGACAATAGCAGCATACTGCAGTAACTAGAGAGCAATGGAAAAGCTTTGCTTGTGGATCGTCATGGATGAGTTCCAAATACCATCTTGGTTTTGTCTACCAAGAGAGTTGTAGTTAGACTTTTCCTTGAAATAGGATTTGGCAGATGGTGATGTTTCAAGGAGGGATAGCTCCAGAAACAGCGATTATTCGATCTGGGAACCTGACATTCACTTTCCTCCATCATCGGCTGTGGACTTCCTCTATACAGGGGATGTCATCGCTGCTAAGCATAGCAACAACATCAGACATGGTGGGGCGCTCCGCTGATTTCTCTTGAACACACATTAGTGCCACCACAAGACATTTCATCATTTCTCCAGGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTTTATAAAAAAAAAAAAAAAAA] [+] EMBL AK064206 [CCTCGTAGGCTGATTGGTTTGAATACTTGAATGGTCAAGAGAATGCAAAATTCTTTATGAATGGAACCGTGCAGGGTAACGTACTTTTCTTGAGCACATCCAGCAGTAGCATCTTGGTATCAGTGAAGAACTGTGTATCCGTTTCATACCTCAGTGTGCACCACACCCCAAGAATGGCCGCTCCCATCTGGGTAGTGCTAATCTTGCTCTGCCTGCCTGAGATGATACCATCCAGGCAGTTCATGCATTGCTCCGATGGCATGCCCTGCATGCACTGCACTAGCCCATACACCGTCTGTCCTGTCTCCTCAAACCTCTGTTTGCCTACTGCATACCTCTCTGGTCGACTCACTGCAGCATCAGTAAGTGCACGCAGCACCTTGGTGACAAGATCCTCAAATTGCTTAGCCACAGAAGCTGTCACAGCATTCAGGTTAGTATTCACAGTGCACTCCGGCACATTTGTGAAGCTGGAGATAAAATCCTGGTTGGAGAAGTGTATCCTGGCCTGGTCTTGGTTGTAATAGTAGGTCACCTTCTTGGTCATGGCCTTGGGAGAGTAAGAGTTGCTGTTTTTGCTGTTGATGGCTGCATCAAGGGCCTCAGTTAGGTGCTTGCGACAATCGGAGCCATCAGAATCGCCTCGACAAGAAACTGCACCATAGACTTTGTCCAGGCCTGTGCCGGCCATGCCAGTAGCTGAGTGCAGCTCTGTGGCATTAGCAATGAGCGTTGCGGCAAGGGAGATAAGGTTGGATTTGTAGGTACTGTTTGGCATGTAAATGGCGCCATTATAGTCACTGCAGAGTTCCTGGCCGACAGATGGTGCTGGGCAGGAGATGAAGAGAACTAGGAGAGACAATAGCAGCATACTGCAGTAACTAGAGAGCAATGGAAAAGCTTTGCTTGTGGATCGTCATGGATGAGTTCCAAATACCATCTTGGTTTTGTCTACCAAGAGAGTTGTAGTTAGACTTTTCCTTGAAATAGGATTTGGCAGATGGTGATGTTTCAAGGAGGGATAGCTCCAGAAACAGCGATTATTCGATCTGGGAACCTGACATTCACTTTCCTCCATCATCGGCTGTGGACTTCCTCTATACAGGGGATGTCATCGCTGCTAAGCATAGCAACAACATCAGACATGGTGGGGCGCTCCGCTGATTTCTCTTGAACACACATTAGTGCCACCACAAGACATTTCATCATTTCTCCAGGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTA ] [+] EMBL AU093203 [ TCCTGAATTTTGCTAAGATAGTGTNCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGNTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTTTATAAAAAAAAAAAAAAAAA] consensusID : consensus_9545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 436 fasta sequence [TGTNGNGGAAAAATCATACAAGGAGAACTCTGAACCAGCATCTTCTATCTTCCAAAGCCGCATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTTTATAAAAAAAAAAAAAAAA] [+] EMBL AU161475 [ GTNGNGGAAAAATCATACAAGGAGAACTCTGAACCAGCATCTTCTATCTTCCAAAGCCGCATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTTTATAAAAAAAAAAAAAAAA] [+] EMBL OS1347A [tngNGNGNAAAAATCATACAAGGAGAACTCTGAACCAGCATCTTCTATCTTCCAAAGCCGCATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAA ] [+] EMBL OS1360A [ tgcgnGAAAAATCATACAAGGAGAACTCTGAACCAGCATCTTCTATCTTCCAAAGCCGCATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAG ] [+] EMBL C98268 [ TCATACAAGGAGAACTCTGAACCAGCATCTTCTATCTTCCAAAGCCGCATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTAAACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGAATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTTTGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAATTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTCAGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTTTATAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9545#0 CCTCGTAGGCTGATTGGTTTGAATACTTGAATGGTCAAGAGAATGCAAAATTCTTTATGA 60 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 ATGGAACCGTGCAGGGTAACGTACTTTTCTTGAGCACATCCAGCAGTAGCATCTTGGTAT 120 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 CAGTGAAGAACTGTGTATCCGTTTCATACCTCAGTGTGCACCACACCCCAAGAATGGCCG 180 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 CTCCCATCTGGGTAGTGCTAATCTTGCTCTGCCTGCCTGAGATGATACCATCCAGGCAGT 240 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 TCATGCATTGCTCCGATGGCATGCCCTGCATGCACTGCACTAGCCCATACACCGTCTGTC 300 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 CTGTCTCCTCAAACCTCTGTTTGCCTACTGCATACCTCTCTGGTCGACTCACTGCAGCAT 360 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 CAGTAAGTGCACGCAGCACCTTGGTGACAAGATCCTCAAATTGCTTAGCCACAGAAGCTG 420 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 TCACAGCATTCAGGTTAGTATTCACAGTGCACTCCGGCACATTTGTGAAGCTGGAGATAA 480 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 AATCCTGGTTGGAGAAGTGTATCCTGGCCTGGTCTTGGTTGTAATAGTAGGTCACCTTCT 540 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 TGGTCATGGCCTTGGGAGAGTAAGAGTTGCTGTTTTTGCTGTTGATGGCTGCATCAAGGG 600 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 CCTCAGTTAGGTGCTTGCGACAATCGGAGCCATCAGAATCGCCTCGACAAGAAACTGCAC 660 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 CATAGACTTTGTCCAGGCCTGTGCCGGCCATGCCAGTAGCTGAGTGCAGCTCTGTGGCAT 720 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 TAGCAATGAGCGTTGCGGCAAGGGAGATAAGGTTGGATTTGTAGGTACTGTTTGGCATGT 780 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 AAATGGCGCCATTATAGTCACTGCAGAGTTCCTGGCCGACAGATGGTGCTGGGCAGGAGA 840 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 TGAAGAGAACTAGGAGAGACAATAGCAGCATACTGCAGTAACTAGAGAGCAATGGAAAAG 900 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 CTTTGCTTGTGGATCGTCATGGATGAGTTCCAAATACCATCTTGGTTTTGTCTACCAAGA 960 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 GAGTTGTAGTTAGACTTTTCCTTGAAATAGGATTTGGCAGATGGTGATGTTTCAAGGAGG 1020 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 GATAGCTCCAGAAACAGCGATTATTCGATCTGGGAACCTGACATTCACTTTCCTCCATCA 1080 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 TCGGCTGTGGACTTCCTCTATACAGGGGATGTCATCGCTGCTAAGCATAGCAACAACATC 1140 consensus_9545#1 ------------------------------------------------------------ consensus_9545#0 AGACATGGTGGGGCGCTCCGCTGATTTCTCTTGAACACACATTAGTGCCACCACAAGACA 1200 consensus_9545#1 TGTNGNGGAAAAATCATACAAGGAGAACTCT-GAACCAGCATC--TTCTATCTTCCAAAG 57 * ** * * ** **** **** *** * * * * * consensus_9545#0 TTTCATCATTTC-TCCAGGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTA 1259 consensus_9545#1 CCGCATAACTTCATCCATGAAACAGAAAAACAGGCGTGTGCAGATGATGGAAAGAGAGTA 117 *** * *** **** ****************************************** consensus_9545#0 AACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGA 1319 consensus_9545#1 AACAGTAGCAATGATCAAGATTGCATGTCCCTTCTTTTGCCCTGAATTTTGAAACATAGA 177 ************************************************************ consensus_9545#0 ATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTT 1379 consensus_9545#1 ATGGTTTACATGTAGTGAATGAATCAGTTCTACAATATCAAAGACTTAGCTCCTGAATTT 237 ************************************************************ consensus_9545#0 TGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAA 1439 consensus_9545#1 TGCTAAGATAGTGTGCCTTACGGTTGGATTCAAGTGTTCGTTTCTTTCTTTTTGGCCAAA 297 ************************************************************ consensus_9545#0 TTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTC 1499 consensus_9545#1 TTGATCAGCTAAATTGAATCTTAATTTGTACCATACCGAAAGGATTCATCTTAAACTTTC 357 ************************************************************ consensus_9545#0 AGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTT 1559 consensus_9545#1 AGTCAATATATACATGTAAAATATACATATTTGGCAAGCAGAGTAGCATGCAGTCCTTTT 417 ************************************************************ consensus_9545#0 TATAAAAAAAAAAAAAAAAA 1579 consensus_9545#1 TATAAAAAAAAAAAAAAAA- 436 ******************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||