These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 602 fasta sequence [CGCCAAGCTGACGCGGGAGGTCGCCGCCGGGAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGGCACANCGGGAGGTCCGC-GCGGGAGGTCAGGTCGCCGCTGGGAGGGGC-GCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGCCAGTAGCAGCCAGTGTGCTACTCCACCGGTCAGCAGCAACCGGCGTGAGCAAGCCTCACAGGCTTCTGTAGATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCTTATTGTTGAACTTATAATGTTTGTATTGTTCCAAAA] [+] EMBL AK062440 [CGCCAAGCTGACGCGGGAGGTCGCCGCCGGGAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGGCACCACGGGAGGTCCGC GCGGGAGGTCAGGTCGCCGCTGGGAGGGGC GCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGCCAGTAGCAGCCAGTGTGCTACTCCACCGGTCAGCAGCAACCGGCGTGAGCAAGCCTCACAGGCTTCTGTAGATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCTTATTGTTGAACTTATAA ] [+] EMBL OSC17232 [ CTGACGCGGGAGGTCGCCGCCGGGAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGGCACANCGGGAGGTCCGC GCGGNAGGTCAGGTCGCCGCTGGGAGGGGC GCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTNTCGCCTCGCCTCCTACCCGTNTGCGCGA NTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGNCTNCCTCCAGTCGCGNCTTCCACCTNCGGTCGGCACTGCCTNCTCTGTGCCGAGCCGCCGAGCT CCCTTCGGCCGGNAACGTNCT NCCTGCGCTGAGCAAGTAATTTGA ] [+] EMBL C28072 [ GGGAGGTCGCCGCCGGGAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGG ACANCGGGAGGTCCGC GCGGAAGGTCAGGTCGCCGCTGGGAGGGGC GCCACGGGAGGTCGTCGCCGGCGGTTCCACCCTCTAGCCGTTNTCGNNTCGCCTCCTACCCGTNTGCGCNANTTCCCCTCCGGCCGGTNATNAACGTC ] [+] EMBL BI797236 [ GTCCGCGGCGGGA GTCAGGTCTCC CTGGGAGGGGCTGCCACGGGGAGTCGTCTCC GCGGCTCCACCCT TA CC TTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCC GCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCCCTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCC GCAATGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCCATGGCTACTTCGGCCAGTA CAGCCAGTGTGCTACTCCACCGGTCA CAGC ACCGGCGTGA CAAGCCTCACAGGCTTCTGTAGATGCATCCCC ACT CCAAACAAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTG TAAAGTATGACATTTGAAGTTGTCTTATTGTTGAACTTATAATGTTTGTATTGTTCCAAAA] consensusID : consensus_9546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [CTGACGCGGAGGTCGCCGCCGGAAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGNAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGNAGGGGCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAANGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGCCAGTAGCAGCCAGTGTGCTACTCCACCGGTCAGCAGCAACCGGCGTGAGCAAGCCTCACAGGCTTCTGTANATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCTTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU093207 [CTGACGCGGAGGTCGCCGCCGGAAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGNAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGNAGGGGCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAANGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGCCAGTAGCAGCCAGTGTGCTACTCCACCGGTCAGCAGCAACCGGCGTGAGCAAGCCTCACAGGCTTCTGTANATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCTTAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9546#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [TCTCCTTCTCTTCGAGTTTTCTCCTCCACAGCCGCCAAGCTGACGCGGGAGGTCGCCGCCGGGAGGGGCTCCAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGGAGGGGCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTTCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAATGTCCTCCCCTGCGCTGGAGCAGGTATCCCCCTTCTCCCGTACTCTAGATCTAGTTATTTATTTTTTCGATCTAATACCTACTGACCATGATCTGTTATTTCCGATTTGGATGGGAGTGATTTGAACCAATGGCTACTTTCGGCCGTAGCAGCCAGTGTGCTACCCCACCGGTCAGCAGCAA] [+] EMBL CA758487 [TCTCCTTCTCTTCGAGTTTTCTCCTCCACAGCCGCCAAGCTGACGCGGGAGGTCGCCGCCGGGAGGGGCTCCAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGGAGGGGCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTTCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAATGTCCTCCCCTGCGCTGGAGCAGGTATCCCCCTTCTCCCGTACTCTAGATCTAGTTATTTATTTTTTCGATCTAATACCTACTGACCATGATCTGTTATTTCCGATTTGGATGGGAGTGATTTGAACCAATGGCTACTTTCGGCCGTAGCAGCCAGTGTGCTACCCCACCGGTCAGCAGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9546#0 --------------------------------CGCCAAGCTGACGCGGGAGGTCGCCGCC 28 consensus_9546#1 ---------------------------------------CTGACGCGG-AGGTCGCCGCC 20 consensus_9546#2 TCTCCTTCTCTTCGAGTTTTCTCCTCCACAGCCGCCAAGCTGACGCGGGAGGTCGCCGCC 60 ********* *********** consensus_9546#0 GGGAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGG 88 consensus_9546#1 GGAAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGG 80 consensus_9546#2 GGGAGGGGCTCCAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGG 120 ** ******** ************************************************ consensus_9546#0 GAGGGGTGCCATAGGCACANCGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGGAGGG 148 consensus_9546#1 NAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGNAGGG 140 consensus_9546#2 GAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGGAGGG 180 ***************** *********************************** **** consensus_9546#0 GCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTA 208 consensus_9546#1 GCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTA 200 consensus_9546#2 GCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTA 240 ************************************************************ consensus_9546#0 CCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCA 268 consensus_9546#1 CCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAANGTCTCCAACCGCGCCTCCCTCCA 260 consensus_9546#2 CCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCA 300 ************************************ *********************** consensus_9546#0 GTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCT 328 consensus_9546#1 GTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCT 320 consensus_9546#2 GTCGCGCCTCCCACCTCCGGTCGCCACTGCCTTCTCTGTGCCGAGCCGCCGAGCTCCCCT 360 ******************************** *************************** consensus_9546#0 CCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGC 388 consensus_9546#1 CCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGC 380 consensus_9546#2 CCGGCCGGCAATGTCCTCCCCTGCGCTGGAGCAGGTATCC---CC-----CTTCTCCCGT 412 *********** **************** ** ** ** ** ** * * consensus_9546#0 CAGTAGCAGCCAGTGTGCTACTCCACCGGTC-AGCAGCAACCGGC-GTGAGCAAGCCTCA 446 consensus_9546#1 CAGTAGCAGCCAGTGTGCTACTCCACCGGTC-AGCAGCAACCGGC-GTGAGCAAGCCTCA 438 consensus_9546#2 ACTCTAGATCTAGTTATTTATTTTTTCGATCTAATACCTACTGACCATGATCTGTTATTT 472 * * *** ** * ** ** * * * ** * * *** * * consensus_9546#0 CAGGCTTCTGTAGATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACT 506 consensus_9546#1 CAGGCTTCTGTANATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACT 498 consensus_9546#2 CCGATTTGGATGGGAGTGATTTGAACCAATGGCTACTTTCGGCCGTAGCAGCCAGTGTGC 532 * * ** * * *** * * * * * * consensus_9546#0 TGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCT 566 consensus_9546#1 TGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCT 558 consensus_9546#2 TACCCCACCGGTCAGCAGCAA--------------------------------------- 553 * * * * consensus_9546#0 TATTGTTGAACTTATAATGTTTGTATTGTTCCAAAA 602 consensus_9546#1 TAAAAAAAAAAAAAAAAAAAAAA------------- 581 consensus_9546#2 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||