cluster # 9546

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Oryza sativa
cluster # 9546 cluster # 9546 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9546#0 length = 602 sequences # 4

consensus_9546#1 length = 581 sequences # 1
consensus_9546#2 length = 553 sequences # 1

consensusID : consensus_9546#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 602
fasta sequence

                              [CGCCAAGCTGACGCGGGAGGTCGCCGCCGGGAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGGCACANCGGGAGGTCCGC-GCGGGAGGTCAGGTCGCCGCTGGGAGGGGC-GCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGCCAGTAGCAGCCAGTGTGCTACTCCACCGGTCAGCAGCAACCGGCGTGAGCAAGCCTCACAGGCTTCTGTAGATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCTTATTGTTGAACTTATAATGTTTGTATTGTTCCAAAA]

[+] EMBL AK062440             [CGCCAAGCTGACGCGGGAGGTCGCCGCCGGGAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGGCACCACGGGAGGTCCGC GCGGGAGGTCAGGTCGCCGCTGGGAGGGGC GCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGCCAGTAGCAGCCAGTGTGCTACTCCACCGGTCAGCAGCAACCGGCGTGAGCAAGCCTCACAGGCTTCTGTAGATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCTTATTGTTGAACTTATAA                   ]
[+] EMBL OSC17232             [       CTGACGCGGGAGGTCGCCGCCGGGAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGGCACANCGGGAGGTCCGC GCGGNAGGTCAGGTCGCCGCTGGGAGGGGC GCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTNTCGCCTCGCCTCCTACCCGTNTGCGCGA NTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGNCTNCCTCCAGTCGCGNCTTCCACCTNCGGTCGGCACTGCCTNCTCTGTGCCGAGCCGCCGAGCT CCCTTCGGCCGGNAACGTNCT NCCTGCGCTGAGCAAGTAATTTGA                                                                                                                                                                                                                                        ]
[+] EMBL C28072               [              GGGAGGTCGCCGCCGGGAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGG ACANCGGGAGGTCCGC GCGGAAGGTCAGGTCGCCGCTGGGAGGGGC GCCACGGGAGGTCGTCGCCGGCGGTTCCACCCTCTAGCCGTTNTCGNNTCGCCTCCTACCCGTNTGCGCNANTTCCCCTCCGGCCGGTNATNAACGTC                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BI797236             [                                                                                                                  GTCCGCGGCGGGA GTCAGGTCTCC CTGGGAGGGGCTGCCACGGGGAGTCGTCTCC GCGGCTCCACCCT TA CC TTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCC GCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCCCTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCC GCAATGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCCATGGCTACTTCGGCCAGTA CAGCCAGTGTGCTACTCCACCGGTCA CAGC ACCGGCGTGA CAAGCCTCACAGGCTTCTGTAGATGCATCCCC ACT CCAAACAAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTG TAAAGTATGACATTTGAAGTTGTCTTATTGTTGAACTTATAATGTTTGTATTGTTCCAAAA]




>consensus_9546#0
CGCCAAGCTGACGCGGGAGGTCGCCGCCGGGAGGGGCTCTAGGCGGACATGGGAGGGGCG
CCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGGCACANCGGGAGGTCCGC
GCGGGAGGTCAGGTCGCCGCTGGGAGGGGCGCCACGGGAGGTCGTCGCCGGCGGCTCCAC
CCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCA
TCAACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCT
CCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAACGTCCTCCCCTGCGCTGAGCA
AGTGATTTGAACCAATGGCTACTTCGGCCAGTAGCAGCCAGTGTGCTACTCCACCGGTCA
GCAGCAACCGGCGTGAGCAAGCCTCACAGGCTTCTGTAGATGCATCCCCAACTGCAAAAC
AAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTG
CTAAAGTATGACATTTGAAGTTGTCTTATTGTTGAACTTATAATGTTTGTATTGTTCCAA
AA

consensusID : consensus_9546#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [CTGACGCGGAGGTCGCCGCCGGAAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGNAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGNAGGGGCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAANGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGCCAGTAGCAGCCAGTGTGCTACTCCACCGGTCAGCAGCAACCGGCGTGAGCAAGCCTCACAGGCTTCTGTANATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCTTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU093207             [CTGACGCGGAGGTCGCCGCCGGAAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGNAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGNAGGGGCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAANGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGCCAGTAGCAGCCAGTGTGCTACTCCACCGGTCAGCAGCAACCGGCGTGAGCAAGCCTCACAGGCTTCTGTANATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCTTAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9546#1
CTGACGCGGAGGTCGCCGCCGGAAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTG
CCATGGGAGGTCACCGCCGGNAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGG
TCAGGTCGCCGCTGGNAGGGGCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGC
CGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAANGTC
TCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTG
CCGAGCCGCCGAGCTCCCCTCCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTT
GAACCAATGGCTACTTCGGCCAGTAGCAGCCAGTGTGCTACTCCACCGGTCAGCAGCAAC
CGGCGTGAGCAAGCCTCACAGGCTTCTGTANATGCATCCCCAACTGCAAAACAAGCTGAA
TAGGAAGAAGAGGAAACTTGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTA
TGACATTTGAAGTTGTCTTAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9546#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [TCTCCTTCTCTTCGAGTTTTCTCCTCCACAGCCGCCAAGCTGACGCGGGAGGTCGCCGCCGGGAGGGGCTCCAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGGAGGGGCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTTCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAATGTCCTCCCCTGCGCTGGAGCAGGTATCCCCCTTCTCCCGTACTCTAGATCTAGTTATTTATTTTTTCGATCTAATACCTACTGACCATGATCTGTTATTTCCGATTTGGATGGGAGTGATTTGAACCAATGGCTACTTTCGGCCGTAGCAGCCAGTGTGCTACCCCACCGGTCAGCAGCAA]

[+] EMBL CA758487             [TCTCCTTCTCTTCGAGTTTTCTCCTCCACAGCCGCCAAGCTGACGCGGGAGGTCGCCGCCGGGAGGGGCTCCAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGGGAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGGAGGGGCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTACCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCAGTCGCGCCTCCCACCTCCGGTCGCCACTGCCTTCTCTGTGCCGAGCCGCCGAGCTCCCCTCCGGCCGGCAATGTCCTCCCCTGCGCTGGAGCAGGTATCCCCCTTCTCCCGTACTCTAGATCTAGTTATTTATTTTTTCGATCTAATACCTACTGACCATGATCTGTTATTTCCGATTTGGATGGGAGTGATTTGAACCAATGGCTACTTTCGGCCGTAGCAGCCAGTGTGCTACCCCACCGGTCAGCAGCAA]




>consensus_9546#2
TCTCCTTCTCTTCGAGTTTTCTCCTCCACAGCCGCCAAGCTGACGCGGGAGGTCGCCGCC
GGGAGGGGCTCCAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGG
GAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGGAGGG
GCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTA
CCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCA
GTCGCGCCTCCCACCTCCGGTCGCCACTGCCTTCTCTGTGCCGAGCCGCCGAGCTCCCCT
CCGGCCGGCAATGTCCTCCCCTGCGCTGGAGCAGGTATCCCCCTTCTCCCGTACTCTAGA
TCTAGTTATTTATTTTTTCGATCTAATACCTACTGACCATGATCTGTTATTTCCGATTTG
GATGGGAGTGATTTGAACCAATGGCTACTTTCGGCCGTAGCAGCCAGTGTGCTACCCCAC
CGGTCAGCAGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9546#0      --------------------------------CGCCAAGCTGACGCGGGAGGTCGCCGCC 28
consensus_9546#1      ---------------------------------------CTGACGCGG-AGGTCGCCGCC 20
consensus_9546#2      TCTCCTTCTCTTCGAGTTTTCTCCTCCACAGCCGCCAAGCTGACGCGGGAGGTCGCCGCC 60
                                                             ********* ***********

consensus_9546#0      GGGAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGG 88
consensus_9546#1      GGAAGGGGCTCTAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGG 80
consensus_9546#2      GGGAGGGGCTCCAGGCGGACATGGGAGGGGCGCCACCGTGCCATGGGAGGTCACCGCCGG 120
                      ** ******** ************************************************

consensus_9546#0      GAGGGGTGCCATAGGCACANCGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGGAGGG 148
consensus_9546#1      NAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGNAGGG 140
consensus_9546#2      GAGGGGTGCCATAGGCACCACGGGAGGTCCGCGCGGGAGGTCAGGTCGCCGCTGGGAGGG 180
                       *****************  *********************************** ****

consensus_9546#0      GCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTA 208
consensus_9546#1      GCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTA 200
consensus_9546#2      GCGCCACGGGAGGTCGTCGCCGGCGGCTCCACCCTCTAGCCGTTGTCGCCTCGCCTCCTA 240
                      ************************************************************

consensus_9546#0      CCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCA 268
consensus_9546#1      CCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAANGTCTCCAACCGCGCCTCCCTCCA 260
consensus_9546#2      CCCGTCTGCGCGAGCTCCCCTCCGGCCGGTCATCAACGTCTCCAACCGCGCCTCCCTCCA 300
                      ************************************ ***********************

consensus_9546#0      GTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCT 328
consensus_9546#1      GTCGCGCCTCCCACCTCCGGTCGCCACTGCCTCCTCTGTGCCGAGCCGCCGAGCTCCCCT 320
consensus_9546#2      GTCGCGCCTCCCACCTCCGGTCGCCACTGCCTTCTCTGTGCCGAGCCGCCGAGCTCCCCT 360
                      ******************************** ***************************

consensus_9546#0      CCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGC 388
consensus_9546#1      CCGGCCGGCAACGTCCTCCCCTGCGCTGAGCAAGTGATTTGAACCAATGGCTACTTCGGC 380
consensus_9546#2      CCGGCCGGCAATGTCCTCCCCTGCGCTGGAGCAGGTATCC---CC-----CTTCTCCCGT 412
                      *********** ****************    **  **     **     ** ** * * 

consensus_9546#0      CAGTAGCAGCCAGTGTGCTACTCCACCGGTC-AGCAGCAACCGGC-GTGAGCAAGCCTCA 446
consensus_9546#1      CAGTAGCAGCCAGTGTGCTACTCCACCGGTC-AGCAGCAACCGGC-GTGAGCAAGCCTCA 438
consensus_9546#2      ACTCTAGATCTAGTTATTTATTTTTTCGATCTAATACCTACTGACCATGATCTGTTATTT 472
                             * * ***    ** *    ** ** *  * * ** * *  *** *     *  

consensus_9546#0      CAGGCTTCTGTAGATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACT 506
consensus_9546#1      CAGGCTTCTGTANATGCATCCCCAACTGCAAAACAAGCTGAATAGGAAGAAGAGGAAACT 498
consensus_9546#2      CCGATTTGGATGGGAGTGATTTGAACCAATGGCTACTTTCGGCCGTAGCAGCCAGTGTGC 532
                      * *  **   *    *       ***        *   *     * *  *    *     

consensus_9546#0      TGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCT 566
consensus_9546#1      TGTGTAATTGAAGTTTGTTGATTGTGTAATTGTGCTAAAGTATGACATTTGAAGTTGTCT 558
consensus_9546#2      TACCCCACCGGTCAGCAGCAA--------------------------------------- 553
                      *     *  *          *                                       

consensus_9546#0      TATTGTTGAACTTATAATGTTTGTATTGTTCCAAAA 602
consensus_9546#1      TAAAAAAAAAAAAAAAAAAAAAA------------- 581
consensus_9546#2      ------------------------------------