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Oryza sativa
cluster # 9556 cluster # 9556       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9556#0 length = 1734 sequences # 6  

consensusID : consensus_9556#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1734
fasta sequence
                              [CCTTGAGAGACAGGGGGGCAAATATTCCGCCACTTGCCTTGATTCTGCTTGCTGCGGCTGCTGCCCCGTTGCTTGACGTCTACAGCACTGGGAGAGCACCAACCGCGCATCATACGCATCAAGAGCAGAGAGCGCGCAGAGGGAGAGGGGTGAGGAGGAGATGGCTGCGAAGTGGCAGGAGGCGCCGGCGCCGGGTGTGAGGGTCCTCCTGTTCGCCGTCGCGGCCGCCGCGCTGCTGCTGGTCGTGTCGGCACGGAAGGTGGGGGAGACGTGCGCGGCGGACCGGAACTGCGACGCCGGGCTGCACTGCGAGACGTGCGTGGCCGACGGCAACGTCCGCCCGCGCTGCACCCGCGTCACCCCCGTCGACCCGCAGACCAAGGCGCGGGACCTGCCGTTCAACCGGTACGCGTGGCTGACGACGCACAACTCGTTCGCGCGGCTCGGCACGCGGTCGCGGACGGGGACGGCCATCGCCACGGCCTGGAACCAGCAGGACACCATCACCGACCAGCTCAACAACGGCGTGCGAGGACTGATGCTGGACATGTACGACTTCCGCAACGACATCTGGCTCTGCCACTCCTTCGGCGGCGCCTGCCAGAACTTCACCGCATTCGTGCCGGCGGTGGAGGTGCTGGGCGAGATCGAGCGGTTCTTGGCACGGAACCCGTCGGAGGTGGTGACGGTGTTCGTGGAGGACTACGTGGAGTCGCCCATGGGGCTCACCCGCGTCCTCAACGCCTCCGGCCTGACAAAGTACGTGTTCCCGGCGTGGCGGATGCCCAAGAGCGGCGGCGACTGGCCGCGGCTCAGCGACATGGTCCGCGACAACCACCGCCTCCTCCTCTTCACCTCCAAGTCCGCCAAGGAGGCCGCAGAGGGCATCCCCTACGAGTGGCACTACGTCGTCGAAAACCAGTATGGGACGAAGGGGATGATCAAGGGGAGGTGCCCGAACCGCGCGGAGTCGGCCGCCATGAACGACCTCTCGAGGTCGCTGGTGCTGGTGAACTACTTCAGGGACCTACCGAATTTCCCGGTGGCCTGCAAGGACAACTCGGCGGAGCTGCTCGACATGCTCACCACCTGCCATGACCTGTCCGCGGACAGATGGGCCAATTTCATCGCCGTCGATTTCTACAAGAGAAGTGATCGAGGTGGTGCGGCTGAAGCCACGGACAGGGCCAACGGCGGACTGGTCTGTGGGTGTGGGAGCGTCTCTGCTTGCAGTGGCAATGGTACATGCACGACCGCTCGGCACGGCGGCACGCCCAAAGGCATCTTTAACGCGACATCGGGCGCCACGGCGTTGCTGCGGCCGCCGACGGCGACGTTGCAATGGCAGCAGCTCATCATACTGGTGCCATCTACGCTGGCTGCTCTACTCTTGAGCCTTTGAGAGAACATGGCAGAAACACCAAGCATCACCACCGCATCCTTTCCCCCCAAATTTTGCTGTACATAGATTGCATCTGCCTCCCAGAAACAGATTAGATCCCGCTTTACATTGTACATCAAACATTCGCAAGAGTTTTGGATACCTGATTGGTTGGGTCTACATTGTAATCGATCAAGAATTTGTTTGTACTCATTGTACGCAAGACATGCAAGCTCCGATGAATGAGCACATCAAAAACACGTACTTCCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK070740             [CCTTGAGAGACAGGGGGGCAAATATTCCGCCACTTGCCTTGATTCTGCTTGCTGCGGCTGCTGCCCCGTTGCTTGACGTCTACAGCACTGGGAGAGCACCAACCGCGCATCATACGCATCAAGAGCAGAGAGCGCGCAGAGGGAGAGGGGTGAGGAGGAGATGGCTGCGAAGTGGCAGGAGGCGCCGGCGCCGGGTGTGAGGGTCCTCCTGTTCGCCGTCGCGGCCGCCGCGCTGCTGCTGGTCGTGTCGGCACGGAAGGTGGGGGAGACGTGCGCGGCGGACCGGAACTGCGACGCCGGGCTGCACTGCGAGACGTGCGTGGCCGACGGCAACGTCCGCCCGCGCTGCACCCGCGTCACCCCCGTCGACCCGCAGACCAAGGCGCGGGACCTGCCGTTCAACCGGTACGCGTGGCTGACGACGCACAACTCGTTCGCGCGGCTCGGCACGCGGTCGCGGACGGGGACGGCCATCGCCACGGCCTGGAACCAGCAGGACACCATCACCGACCAGCTCAACAACGGCGTGCGAGGACTGATGCTGGACATGTACGACTTCCGCAACGACATCTGGCTCTGCCACTCCTTCGGCGGCGCCTGCCAGAACTTCACCGCATTCGTGCCGGCGGTGGAGGTGCTGGGCGAGATCGAGCGGTTCTTGGCACGGAACCCGTCGGAGGTGGTGACGGTGTTCGTGGAGGACTACGTGGAGTCGCCCATGGGGCTCACCCGCGTCCTCAACGCCTCCGGCCTGACAAAGTACGTGTTCCCGGCGTGGCGGATGCCCAAGAGCGGCGGCGACTGGCCGCGGCTCAGCGACATGGTCCGCGACAACCACCGCCTCCTCCTCTTCACCTCCAAGTCCGCCAAGGAGGCCGCAGAGGGCATCCCCTACGAGTGGCACTACGTCGTCGAAAACCAGTATGGGACGAAGGGGATGATCAAGGGGAGGTGCCCGAACCGCGCGGAGTCGGCCGCCATGAACGACCTCTCGAGGTCGCTGGTGCTGGTGAACTACTTCAGGGACCTACCGAATTTCCCGGTGGCCTGCAAGGACAACTCGGCGGAGCTGCTCGACATGCTCACCACCTGCCATGACCTGTCCGCGGACAGATGGGCCAATTTCATCGCCGTCGATTTCTACAAGAGAAGTGATCGAGGTGGTGCGGCTGAAGCCACGGACAGGGCCAACGGCGGACTGGTCTGTGGGTGTGGGAGCGTCTCTGCTTGCAGTGGCAATGGTACATGCACGACCGCTCGGCACGGCGGCACGCCCAAAGGCATCTTTAACGCGACATCGGGCGCCACGGCGTTGCTGCGGCCGCCGACGGCGACGTTGCAATGGCAGCAGCTCATCATACTGGTGCCATCTACGCTGGCTGCTCTACTCTTGAGCCTTTGAGAGAACATGGCAGAAACACCAAGCATCACCACCGCATCCTTTCCCCCCAAATTTTGCTGTACATAGATTGCATCTGCCTCCCAGAAACAGATTAGATCCCGCTTTACATTGTACATCAAACATTCGCAAGAGTTTTGGATACCTGATTGGTTGGGTCTACATTGTAATCGATCAAGAATTTGTTTGTACTCATTGTACGCAAGACATGCAAGCTCCGATGAATGAGCACATCAAAAACACG                                                                                           ]
[+] EMBL CB679874             [                              CACTTGCCTTGATTCTGCTTGCTGCGGCTGCTGCCCCGTTGCTTGACGTCTACAGCACTGGGAGAGCACCAACCGCGCATCATACGCATCAAGAGCAGAGAGCGCGCAGAGGGAGAGGGGTGAGGAGGAGATGGCTGCGAAGTGGCAGGAGGCGCCGGCGCCGGGTGTGAGGGTCCTCCTGTTCGCCGTCGCGGCCGCCGCGCTGCTGCTGGTCGTGTCGGCACGGAAGGTGGGGGAGACGTGCGCGGCGGACCGGAACTGCGACGCCGGGCTGCACTGCGAGACGTGCGTGGCCGACGGCAACGTCCGCCCGCGCTGCACCCGCGTCACCCCCGTCGACCCGCAGACCAAGGCGCGGGACCTGCCGTTCAACCGGTACGCGTGGCTGACGACGCACAACTCGTTCGCGCGGCTCGGCACGCGGTCGCGGACGGGGACGGCCATCGCCACGGCCTGGAACCAGCAGGACACCATCACCGACCAGCTCAACAACGGCGTGCGAGGACTGATGCTGGACATGTACGACTTCCGCAACGACATCTGGCTCTGCCACTCCTTCGGCGGCGCCTGCCAGAACTTCACCGCATTCGTGCCGGCGGTGGAGGTGCTGGGCGAGATCGAGCGGTTCTTGGCACGGAACCCGTCGGAGGTGGTGACGGTGTTCGTGGAGGACTACGTGGAGTCGCCCATGGGGCTCACCCGCGTCCTCAACGCCTCCGGCCTGACAAAGTACGTGTTCCCGGCGTGGCGGATGCCCAAGAGCGGCGGCGACTGGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB678854             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGGCGGCGACTGGCCGCGGCTCAGCGACATGGTCCGCGACAACCACCGCCTCCTCCTCTTCACCTCCAAGTCCGCCAAGGAGGCCGCAGAGGGCATCCCCTACGAGTGGCACTACGTCGTCGAAAACCAGTATGGGACGAAGGGGATGATCAAGGGGAGGTGCCCGAACCGCGCGGAGTCGGCCGCCATGAACGACCTCTCGAGGTCGCTGGTGCTGGTGAACTACTTCAGGGACCTACCGAATTTCCCGGTGGCCTGCAAGGACAACTCGGCGGAGCTGCTCGACATGCTCACCACCTGCCATGACCTGTCCGCGGACAGATGGGCCAATTTCATCGCCGTCGATTTCTACAAGAGAAGTGATCGAGGTGGTGCGGCTGAAGCCACGGACAGGGCCAACGGCGGACTGGTCTGTGGGTGTGGGAGCGTCTCTGCTTGCAGTGGCAATGGTACATGCACGACCGCTCGGCACGGCGGCACGCCCAAAGGCATCTTTAACGCGACATCGGGCGCCACGGCGTTGCTGCGGCCGCCGACGGCGACGTTGCAATGGCAGCAGCTCATCATACTGGTGCCATCTACGCTGGCTGCTCTACTCTTGAGCCTTTGAGAGAACATGGCAGAAACACCAAGCATCACCACCGCATCCTTTCCCCCCAAATTTTGCTGTACATAGATTGCATCTGCCTCCCAGAAACAGATTAGATCCCGCTTTACATTGTACATCAAACATTCGCAAGAGTTTTGGATACCTGATTGGTTGGGTCTACATg                                                                                                                                                                         ]
[-] EMBL CB679875             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAAGGGGATGATCAAGGGGAGGTGCCCGAACCGCGCGGAGTCGGCCGCCATGAACGACCTCTCGAGGTCGCTGGTGCTGGTGAACTACTTCAGGGACCTACCGAATTTCCCGGTGGCCTGCAAGGACAACTCGGCGGAGCTGCTCGACATGCTCACCACCTGCCATGACCTGTCCGCGGACAGATGGGCCAATTTCATCGCCGTCGATTTCTACAAGAGAAGTGATCGAGGTGGTGCGGCTGAAGCCACGGACAGGGCCAACGGCGGACTGGTCTGTGGGTGTGGGAGCGTCTCTGCTTGCAGTGGCAATGGTACATGCACGACCGCTCGGCACGGCGGCACGCCCAAAGGCATCTTTAACGCGACATCGGGCGCCACGGCGTTGCTGCGGCCGCCGACGGCGACGTTGCAATGGCAGCAGCTCATCATACTGGTGCCATCTACGCTGGCTGCTCTACTCTTGAGCCTTTGAGAGAACATGGCAGAAACACCAAGCATCACCACCGCATCCTTTCCCCCCAAATTTTGCTGTACATAGATTGCATCTGCCTCCCAGAAACAGATTAGATCCCGCTTTACATTGTACATCAAACATTCGCAAGAGTTTTGGATACGGGATTGGTTGGGTCTACATTGTAATCGATCAAGAATTTGTTTGTACTCATTGTACGCAAGACATGCAAGCTAGGGTGAATGAGCACATCAAAAACACGTACTTCCA                                                                                   ]
[+] EMBL AK104956             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCTCGGCACGGCGGCACGCCCAAAGGCATCTTTAACGCGACATCGGGCGCCACGGCGTTGCTACGGCCGCCGACGGCGACGTTGCAATGGCAGCAGCTCATCATACTGGTGCCATCTACGCTGGCTGCTCTACTCTTGAGCCTTTGAGAGAACATGGCAGAAACACCAAGCATCACCACCGCATCCTTTCCCCCCAAATTTTGCTGTACATAGATTGCATCTGCCTCCCAGAAACAGATTAGATCCCGCTTTACATTGTACATCAAACATTCGCAAGAGTTTTGGATACCTGATTGGTTGGGTCTACATTGTAATCGATCAAGAATTTGTTTGTACTCATTGTACGCAAGACATGCAAGCTCCGATGAA                                                                                                              ]
[+] EMBL AU094493             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGTTGCAATGGCAGCAGCTCATCATACTGGTGCCATCTACGCTGGCTGCTCTACTCTTGAGCCTTTGAGAGAACATGGCAGAAACACCAAGCATCACCACCGCATCCTTTCCCCCCAAATTTTGCTGTACATAGATTGCATCTGCCTCCCAGAAACAGATTAGATCCCGCTTTACATTGTACATCAAACATTCGCAAGAGTTTTGGATACCTGATTGGTTGGGTCTACATTGTAATCGATCAAGAATTTGTTTGTACTCATTGTACGCAAGACATGCAAGCTCCGATGAATGAGCACATCAAAAACACGTACTTCCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_9556#0 CCTTGAGAGACAGGGGGGCAAATATTCCGCCACTTGCCTTGATTCTGCTTGCTGCGGCTG CTGCCCCGTTGCTTGACGTCTACAGCACTGGGAGAGCACCAACCGCGCATCATACGCATC AAGAGCAGAGAGCGCGCAGAGGGAGAGGGGTGAGGAGGAGATGGCTGCGAAGTGGCAGGA GGCGCCGGCGCCGGGTGTGAGGGTCCTCCTGTTCGCCGTCGCGGCCGCCGCGCTGCTGCT GGTCGTGTCGGCACGGAAGGTGGGGGAGACGTGCGCGGCGGACCGGAACTGCGACGCCGG GCTGCACTGCGAGACGTGCGTGGCCGACGGCAACGTCCGCCCGCGCTGCACCCGCGTCAC CCCCGTCGACCCGCAGACCAAGGCGCGGGACCTGCCGTTCAACCGGTACGCGTGGCTGAC GACGCACAACTCGTTCGCGCGGCTCGGCACGCGGTCGCGGACGGGGACGGCCATCGCCAC GGCCTGGAACCAGCAGGACACCATCACCGACCAGCTCAACAACGGCGTGCGAGGACTGAT GCTGGACATGTACGACTTCCGCAACGACATCTGGCTCTGCCACTCCTTCGGCGGCGCCTG CCAGAACTTCACCGCATTCGTGCCGGCGGTGGAGGTGCTGGGCGAGATCGAGCGGTTCTT GGCACGGAACCCGTCGGAGGTGGTGACGGTGTTCGTGGAGGACTACGTGGAGTCGCCCAT GGGGCTCACCCGCGTCCTCAACGCCTCCGGCCTGACAAAGTACGTGTTCCCGGCGTGGCG GATGCCCAAGAGCGGCGGCGACTGGCCGCGGCTCAGCGACATGGTCCGCGACAACCACCG CCTCCTCCTCTTCACCTCCAAGTCCGCCAAGGAGGCCGCAGAGGGCATCCCCTACGAGTG GCACTACGTCGTCGAAAACCAGTATGGGACGAAGGGGATGATCAAGGGGAGGTGCCCGAA CCGCGCGGAGTCGGCCGCCATGAACGACCTCTCGAGGTCGCTGGTGCTGGTGAACTACTT CAGGGACCTACCGAATTTCCCGGTGGCCTGCAAGGACAACTCGGCGGAGCTGCTCGACAT GCTCACCACCTGCCATGACCTGTCCGCGGACAGATGGGCCAATTTCATCGCCGTCGATTT CTACAAGAGAAGTGATCGAGGTGGTGCGGCTGAAGCCACGGACAGGGCCAACGGCGGACT GGTCTGTGGGTGTGGGAGCGTCTCTGCTTGCAGTGGCAATGGTACATGCACGACCGCTCG GCACGGCGGCACGCCCAAAGGCATCTTTAACGCGACATCGGGCGCCACGGCGTTGCTGCG GCCGCCGACGGCGACGTTGCAATGGCAGCAGCTCATCATACTGGTGCCATCTACGCTGGC TGCTCTACTCTTGAGCCTTTGAGAGAACATGGCAGAAACACCAAGCATCACCACCGCATC CTTTCCCCCCAAATTTTGCTGTACATAGATTGCATCTGCCTCCCAGAAACAGATTAGATC CCGCTTTACATTGTACATCAAACATTCGCAAGAGTTTTGGATACCTGATTGGTTGGGTCT ACATTGTAATCGATCAAGAATTTGTTTGTACTCATTGTACGCAAGACATGCAAGCTCCGA TGAATGAGCACATCAAAAACACGTACTTCCATCAAAAAAAAAAAAAAAAAAAAAAAAAAA AANCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)