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Oryza sativa
cluster # 9564 cluster # 9564       Sequences # 6       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9564#0 length = 1134 sequences # 4  
 consensus_9564#1 length = 294 sequences # 2  
consensusID : consensus_9564#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1134
fasta sequence 
                              [CACCACAATACCGTACCCTACATCTCTCACACAGGTAGCAGTAGTACGTAGCCAGCCAGTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGGAGCGCGGCAACCGCTGACCGCACCGCGCGCCAGCAATGGAGTCGTCGCGGGGGAAGCCCGGCCTGAACGGCAGCGGCGGCGGCGCCGCCGCCTTCGACTACAGCAGCCGCCGGGGCTACTACACGGGCGCCGGCGCGGCGCTGCCGCCGTTGGCCGCTGGTTCCAGGGCGCCGCCGGTGGACCCGTGCTGCGTGGTTCTGCGGGTGTTCGTCCTGCTGGGGACGCTGGCGTCCGCTGTGGTGATGGCCGCCGACCGGCAGAGCACCACCGTCCAGATCGCCGCCGGGGAGGAGCTCGCGCCGCCGCTGCGGGTGCCCGTCACGGCCAAGTGGACCTACTCCTCCGCCTTCGTGTACTTCGTGGTGGCGAACGCGATGGTGTTCGCGTTCAGCGCGGCGGCGCTGGCGGCGGTGCGGAGGCGGAGCGCGGTGGTGCCGGTGATGGTGGGGGACCTGGTGGCGATGGCGCTGCTCTTCTCGGCGGTGGGGGCGGCGGCGCAGTTCGGCCTCCTCGGCGAGCGCGGCAACGCGCACGTGAGGTGGGCCAAGGTGTGCGACGTGTACGGGCCCTTCTGCGAGCGCGCCATGGCCGCCGTCGTCGTCGCCCTCATCGCCGCCTTCGCCGACCTCGTCCTCCTCATGCTCACCATCCTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGGTCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGTCAATTAGAGGCAACAGTGGTCGTTTACCTCTGTCAGTGATCNCCGTGAGATGATGCCTGCTTGCCGTCTTAATTTAATCGTTGACATGTTCACTGAAGTAGTAATTGAGGCTTCATTTATTAGCTGTAAGGTGAATTTGAGATGAGTATAAAAAAGAACTGATGGATTAAAAGAAAATAATACAAAATTTACAATGTTGTAAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK060356             [CACCACAATACCGTACCCTACATCTCTCACACAGGTAGCAGTAGTACGTAGCCAGCCAGTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGGAGCGCGGCAACCGCTGACCGCACCGCGCGCCAGCAATGGAGTCGTCGCGGGGGAAGCCCGGCCTGAACGGCAGCGGCGGCGGCGCCGCCGCCTTCGACTACAGCAGCCGCCGGGGCTACTACACGGGCGCCGGCGCGGCGCTGCCGCCGTTGGCCGCTGGTTCCAGGGCGCCGCCGGTGGACCCGTGCTGCGTGGTTCTGCGGGTGTTCGTCCTGCTGGGGACGCTGGCGTCCGCTGTGGTGATGGCCGCCGACCGGCAGAGCACCACCGTCCAGATCGCCGCCGGGGAGGAGCTCGCGCCGCCGCTGCGGGTGCCCGTCACGGCCAAGTGGACCTACTCCTCCGCCTTCGTGTACTTCGTGGTGGCGAACGCGATGGTGTTCGCGTTCAGCGCGGCGGCGCTGGCGGCGGTGCGGAGGCGGAGCGCGGTGGTGCCGGTGATGGTGGGGGACCTGGTGGCGATGGCGCTGCTCTTCTCGGCGGTGGGGGCGGCGGCGCAGTTCGGCCTCCTCGGCGAGCGCGGCAACGCGCACGTGAGGTGGGCCAAGGTGTGCGACGTGTACGGGCCCTTCTGCGAGCGCGCCATGGCCGCCGTCGTCGTCGCCCTCATCGCCGCCTTCGCCGACCTCGTCCTCCTCATGCTCACCATCCTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGGTCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGTCAATTAGAGGCAAC                                                                                                                                                                                                                             ]
[+] EMBL AK059622             [                                                          GTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGGAGCGCGGCAACCGCTGACCGCACCGCGCGCCAGCAATGGAGTCGTCGCGGGGGAAGCCCGGCCTGAACGGCAGCGGCGGCGGCGCCGCCGCCTTCGACTACAGCAGCCGCCGGGGCTACTACACGGGCGCCGGCGCGGCGCTGCCGCCGTTGGCCGCTGGTTCCGGGGCGCCGCCGGTGGACCCGTGCTGCGTGGTTCTGCGGGTGTTCGTCCTGCTGGGGACGCTGGCGTCCGCTGTGGTGATGGCCGCCGACCGGCAGAGCACCACCGTCCAGATCGCCGCCGGGGAGGAGCTCGCGCCGCCGCTGCGGGTGCCCGTCACGGCCAAGTGGACCTACTCCTCCGCCTTCGTGTACTTCGTGGTGGCGAACGCGATGGTGTTCGCGTTCAGCGCGGCGGCGCTGGCGGCGGTGCGGAGGCGGAGCGCGGTGGTGCCGGTGATGGTGGGGGACCTGGTGGCGATGGCGCTGCTCTTCTCGGCGGTGGGGGCGGCGGCGCAGTTCGGCCTCCTCGGCGAGCGCGGCAACGCGCACGTGAGGTGGGCCAAGGTGTGCGACGTGTACGGGCCCTTCTGCGAGCGCGCCATGGCCGCCGTCGTCGTCGCCCTCATCGCCGCCTTCGCCGACCTCGTCCTCCTCATGCTCACCATCCTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGGTCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGTCAATTAGAGGCAACAGTGGTCGTT                                                                                                                                                                                                                   ]
[+] EMBL AU096192             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GACCTGGTGGNGATGGCGCTGCTCTTNTCGGCGGTGGGGGCGGCGGCGCAGTTCGGCNTCCTCGGCGAGCGCGGCAACGCGCACNTGAGGTGGGCCAAGGTGTGCGACGTNTACGGGCCCTTNTGCGAGCGCGCCATGGCCGCCGTCGTCGTCGCCCTCATCGCCGCCTTCGCCGACCTCGTCCTCCTCATGCTCACCATCCTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGGTCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGTCAATTAGAGGCAACAGTGGTCGTTTACCTCTGTCAGTGATCNCCGTGAGATGATGCCTGCTTGCCGTCTTAATTTAATCGTTGACATGTTCACTGAAGTAGTAATTGAGGCTTCATTTATTAGCTGTAAGGTGAATTTGAGATGAGTATAAAAAAGAACTGATGGATTAAAAGAAAATAATACAAAATTTACAATGTTGTAAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU096169             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTNTGCGAGCGCGCCATGGCCNCCGTCGTCGTCGCCCTCATCGCCG CTTCGCCGACCTCGTCCTCCTCATGCTCNCCATCCTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGGTCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGTCAATTAGAGGCAACAGTGGTCGTTTACCTCTGTCAGTGATCCCCGTGAGATGATNCCTGCTTGCCGTCTTAATTTAATCGTTGACATGTTCACTGAAGTAGTAATTGAGGCTTCATTTATTAGCTGTAAGGTGAATTTGAGATGAGTATAAAAAAGAACTGATGGATTAAAAGAAAATAATNCAAAATTTACAATGTTGTAAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9564#0
CACCACAATACCGTACCCTACATCTCTCACACAGGTAGCAGTAGTACGTAGCCAGCCAGT
AGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCC
CGCACAGCGGAGCGCGGCAACCGCTGACCGCACCGCGCGCCAGCAATGGAGTCGTCGCGG
GGGAAGCCCGGCCTGAACGGCAGCGGCGGCGGCGCCGCCGCCTTCGACTACAGCAGCCGC
CGGGGCTACTACACGGGCGCCGGCGCGGCGCTGCCGCCGTTGGCCGCTGGTTCCAGGGCG
CCGCCGGTGGACCCGTGCTGCGTGGTTCTGCGGGTGTTCGTCCTGCTGGGGACGCTGGCG
TCCGCTGTGGTGATGGCCGCCGACCGGCAGAGCACCACCGTCCAGATCGCCGCCGGGGAG
GAGCTCGCGCCGCCGCTGCGGGTGCCCGTCACGGCCAAGTGGACCTACTCCTCCGCCTTC
GTGTACTTCGTGGTGGCGAACGCGATGGTGTTCGCGTTCAGCGCGGCGGCGCTGGCGGCG
GTGCGGAGGCGGAGCGCGGTGGTGCCGGTGATGGTGGGGGACCTGGTGGCGATGGCGCTG
CTCTTCTCGGCGGTGGGGGCGGCGGCGCAGTTCGGCCTCCTCGGCGAGCGCGGCAACGCG
CACGTGAGGTGGGCCAAGGTGTGCGACGTGTACGGGCCCTTCTGCGAGCGCGCCATGGCC
GCCGTCGTCGTCGCCCTCATCGCCGCCTTCGCCGACCTCGTCCTCCTCATGCTCACCATC
CTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGGT
CTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGTC
AATTAGAGGCAACAGTGGTCGTTTACCTCTGTCAGTGATCNCCGTGAGATGATGCCTGCT
TGCCGTCTTAATTTAATCGTTGACATGTTCACTGAAGTAGTAATTGAGGCTTCATTTATT
AGCTGTAAGGTGAATTTGAGATGAGTATAAAAAAGAACTGATGGATTAAAAGAAAATAAT
ACAAAATTTACAATGTTGTAAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9564#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 294
fasta sequence 
                              [GTAGCAGTAGTACGTAGCCAGCCAGTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGTAGGCNGGCAACCGCTGACCGCACCGCGCGCCACAATGGAGTCGTCGCGGGGGAAGCCCGGCCTNAACGGCAGCGGCGGCGGCGNCCTTTTC-GGACTACAGCAGCCGCCGGGGCTACTACACGGGCGCCGGCGNGGCGTNGCCGACGTTTGGACGATGGTTCCAGGGCGACGACGGTGGACCCGTGCTGCGTGGTTCTG]

[+] EMBL OSS12339A            [GTAGCAGTAGTACGTAGCCAGCCAGTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGTAGGCNGGCAACCGCTGACCGCACCGCGCGCCACAATGGAGTCGTCGCGGGGGAAGCCCGGCCTNAACGGCAGCGGCGGCGGCGNCCTTTTC GGACTACAGCAGCCGCCGGGGCTACTACACGGGCGCCGGCGNGGCGTNGCCGACGTTTGGACGATGGTTCCAGGGCGACGACGGTGGACCCGTGCTGCGTGGTTCTG]
[+] EMBL OSS12386A            [GTAGCAGTAGTACGTAGCCAGCCAGTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGNAGG TGGCAACCGCTGACCGCACCG GCGNCANAATGGAGTCGTCGCGGGGGAAGCCCGGCCTGAACGGCAGCGGCGGCGNCGNCCCTTTCTGTACTACAGCAGCCGNCGGGGCTAC                                                                                  ]




>consensus_9564#1
GTAGCAGTAGTACGTAGCCAGCCAGTAGTTACACACGCGCTCTGCTCCTCTCGCCTACCC
ACGATTCCAAGGAGAAGAGCGCCTCCCGCACAGCGTAGGCNGGCAACCGCTGACCGCACC
GCGCGCCACAATGGAGTCGTCGCGGGGGAAGCCCGGCCTNAACGGCAGCGGCGGCGGCGN
CCTTTTCGGACTACAGCAGCCGCCGGGGCTACTACACGGGCGCCGGCGNGGCGTNGCCGA
CGTTTGGACGATGGTTCCAGGGCGACGACGGTGGACCCGTGCTGCGTGGTTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9564#0      CACCACAATACCGTACCCTACATCTCTCACACAGGTAGCAGTAGTACGTAGCCAGCCAGT 60
consensus_9564#1      ----------------------------------GTAGCAGTAGTACGTAGCCAGCCAGT 26
                                                        **************************

consensus_9564#0      AGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCC 120
consensus_9564#1      AGTTACACACGCGCTCTGCTCCTCTCGCCTACCCACGATTCCAAGGAGAAGAGCGCCTCC 86
                      ************************************************************

consensus_9564#0      CGCACAGCGGAGCGCGGCAACCGCTGACCGCACCGCGCGCCAGCAATGGAGTCGTCGCGG 180
consensus_9564#1      CGCACAGCGTAGGCNGGCAACCGCTGACCGCACCGCGCGCCA-CAATGGAGTCGTCGCGG 145
                      ********* **   *************************** *****************

consensus_9564#0      GGGAAGCCCGGCCTGAACGGCAGCGGCGGCGGCGCCGCCGCCTTCGACTACAGCAGCCGC 240
consensus_9564#1      GGGAAGCCCGGCCTNAACGGCAGCGGCGGCGGCGNC--CTTTTCGGACTACAGCAGCCGC 203
                      ************** ******************* *  *   *  ***************

consensus_9564#0      CGGGGCTACTACACGGGCGCCGGCGCGGCGCTGCCGCCGTT-GGCCGCTGGTTCCAGGGC 299
consensus_9564#1      CGGGGCTACTACACGGGCGCCGGCGNGGCGTNGCCGACGTTTGGACGATGGTTCCAGGGC 263
                      ************************* ****  **** **** ** ** ************

consensus_9564#0      GCCGCCGGTGGACCCGTGCTGCGTGGTTCTGCGGGTGTTCGTCCTGCTGGGGACGCTGGC 359
consensus_9564#1      GACGACGGTGGACCCGTGCTGCGTGGTTCTG----------------------------- 294
                      * ** **************************                             

consensus_9564#0      GTCCGCTGTGGTGATGGCCGCCGACCGGCAGAGCACCACCGTCCAGATCGCCGCCGGGGA 419
consensus_9564#1      ------------------------------------------------------------
                                                                                  

consensus_9564#0      GGAGCTCGCGCCGCCGCTGCGGGTGCCCGTCACGGCCAAGTGGACCTACTCCTCCGCCTT 479
consensus_9564#1      ------------------------------------------------------------
                                                                                  

consensus_9564#0      CGTGTACTTCGTGGTGGCGAACGCGATGGTGTTCGCGTTCAGCGCGGCGGCGCTGGCGGC 539
consensus_9564#1      ------------------------------------------------------------
                                                                                  

consensus_9564#0      GGTGCGGAGGCGGAGCGCGGTGGTGCCGGTGATGGTGGGGGACCTGGTGGCGATGGCGCT 599
consensus_9564#1      ------------------------------------------------------------
                                                                                  

consensus_9564#0      GCTCTTCTCGGCGGTGGGGGCGGCGGCGCAGTTCGGCCTCCTCGGCGAGCGCGGCAACGC 659
consensus_9564#1      ------------------------------------------------------------
                                                                                  

consensus_9564#0      GCACGTGAGGTGGGCCAAGGTGTGCGACGTGTACGGGCCCTTCTGCGAGCGCGCCATGGC 719
consensus_9564#1      ------------------------------------------------------------
                                                                                  

consensus_9564#0      CGCCGTCGTCGTCGCCCTCATCGCCGCCTTCGCCGACCTCGTCCTCCTCATGCTCACCAT 779
consensus_9564#1      ------------------------------------------------------------
                                                                                  

consensus_9564#0      CCTCACCATCCACAAGGCCTCCTCCTACTACTAGCCATACTCTATTTTGCTTTGCATGGG 839
consensus_9564#1      ------------------------------------------------------------
                                                                                  

consensus_9564#0      TCTTCGATATGGATGTCATGTGTGATTAACTGATTTGATGATTATATTGCGATTATTAGT 899
consensus_9564#1      ------------------------------------------------------------
                                                                                  

consensus_9564#0      CAATTAGAGGCAACAGTGGTCGTTTACCTCTGTCAGTGATCNCCGTGAGATGATGCCTGC 959
consensus_9564#1      ------------------------------------------------------------
                                                                                  

consensus_9564#0      TTGCCGTCTTAATTTAATCGTTGACATGTTCACTGAAGTAGTAATTGAGGCTTCATTTAT 1019
consensus_9564#1      ------------------------------------------------------------
                                                                                  

consensus_9564#0      TAGCTGTAAGGTGAATTTGAGATGAGTATAAAAAAGAACTGATGGATTAAAAGAAAATAA 1079
consensus_9564#1      ------------------------------------------------------------
                                                                                  

consensus_9564#0      TACAAAATTTACAATGTTGTAAGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1134
consensus_9564#1      -------------------------------------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)