cluster # 9565

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Oryza sativa
cluster # 9565 cluster # 9565 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9565#0 length = 787 sequences # 5

consensus_9565#1 length = 377 sequences # 1

consensusID : consensus_9565#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 787
fasta sequence

                              [CCTTTTTTTTTTTTTTTAAATCGGGGAAAAAAACACATCACAATTATTACCGAGCACCTCTATGTACATTGTACAGGATGGGTTCCGTTTCCATATGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAAAAAGGTCGAAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGAC-TGACAAACTCTGCA-CCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATT-TGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTTGGGTCCTGTCCAGATTTCTTAATCTGCGTACCTGCTCTGGTGCATAATTTTATTCTGCACTTGTGGTATTCCACCTGCTGATGAGATTGCCAGGTGCATTGCTCTCTCATGGTTTTGGTAAGCTTTGGTGCCAACCAAAACGGGTTTTCATGGCATGACAGGATGACTGGTTCATACTTGGTGCTCGGGCCCAACATTTGTCAGTTCAGCTACTACAAACAACCGAGCATCCCGTCTAGCTGAAAAGTTAATCTGAAAGATATTGCCATCCCAGTAACAGTAAAATCATTATGGCCTTGCAGGACACAACCGAGCTTTCCCAGGGTTGAGCAGTGATTCTGACATTATCCAACCCTGTTCTCTAGCTTTCTTCTTGAAAGTTCCATAAGAGGAAGAAACAATTTTGCAGGACTCAGCTATGTGTGCCATG]

[+] EMBL CB658390             [CCTTTTTTTTTTTTTTTAAATCGGGGAAAAAAACACATCACAATTATTACCGAGCACCTCTATGTACATTGTACAGGATGGGTTCCGTTTCCATATGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAAAAAGGTCAAAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGAC TGACAAACTCTGCA CCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATT TGTGCCTCTGATATGGGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTTGGGTCCTGTCCAGATTTCTTAATCTGCGTACCTGCTCTGGTGCATAATTTTATTCTGCACTTGGGGTATTCCACCTGCTGATGAGATTGCCAGGTGCATTGCTCTCTCATGGTTTTGGTAAGCTTTGGTGCCAACCAAAACGGGTTTTCATGGCATGACAGGATGACTGGTTCATACTTGGTGCTCGGGCCCAACATTTGTCAGTTCAGCTACTACAAACAACCGAGCATCCCGTCTAGCTGAAAAGTTAATCTGAAAGATATTGCCATCCCAGTAACAGTAAAATCATTATGGCCTTGCAGGACACAACCGAGCTTTCCCAGGGTTGAGCAGTGATTCTGACATTATCCAACCCTGTTCTCTAGCTTTCTTCTTGAAAGTTCCATAAGAGGAAGAAACAATTTTGCAGGACTCAGCTATGTGTGCCATG]
[-] EMBL BI807443             [           TTTTTT   TCCGGGAAAAAAACACATCACAATTATTACCGAGCACCTCTATGTACA TGTACAGGATGGGTTCCG TTCCATATGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAGAAAGGTCGAAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGAC TGACAAACTCTGCA CCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATTGTGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTGGGGTCCTGTCCAGATTTCTTAATCTG GTACCTGCTCTGGTGCATAATTTTATTCTGCACTTGTGGTATTCCACCTGCTGATGAGATTGCCAGGTGCATTG TCTCTCATGG TTTGGTAAGC TTGGTGCCAACCAAAA GGGTTTTCATGG ATGACAGGATGACTGGTTCATACTT                                                                                                                                                                                                                                                           ]
[-] EMBL AU096544             [        ttanTTTTT   TCGGGGAAAAAAACACATCACAATTATTACCGAGCACCTCTATGTACATTGTACAGGATGGGTTCCGTTTCCATATGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAGAAAGGTCGAAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGAC TGACAAACTCTGCA CCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATT TGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTTGGGTCCTGTCCAGATTTCTTAATCTGCGTACCTGCTCTGGTGCATAATTTTATTCTGCACTTGTGGTATTCCACCTGCTGATGAGATTGCCAGGTGCATTGCTCTCTCATNGTTTTGGTAAGCTTTGGTGCCAACCAAAACGGGTTTTCATGGCATGACAGGATGACTGGTTCATACTTGGNGCTCGGGCCCAACATTTGTCAGTTCAGCTACTACAAACAACCG                                                                                                                                                                                                             ]
[+] EMBL CB685119             [                 AAATGGGGGAAAAAAACACATCACAATTATTACCGAGCACCTCTATGTACATTGTACAGGATGGGTTCCGTTTCCATATGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAAAAAGGTCAAAAAAAAGGGAAACATCTCAAAGACCGCCAAATCCGCATAAATAAACAGCTTCAAAAAC TGACAAACTCTGCA CCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATT TGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTTGGGTCCTGTCCAAATTTCTTAATCTGCGTACCTGCTCTGGGGCATAATTTTATTCTGCACTTGGGGTATTCCACCTGCTGATGAAATTGCCAGGGGCATTGCTCTCTCATGGTTTTGGAAAGCTTTGGTGCCAACCAAAACGGGTTTTCATGGCATGACAGGATGACTGGTTCATACTTGGTGCTCGGGCCCAACATTTGTCAGTTCAGCTACTACAAACAACCGAGCATCCCGTCTAGCTGAAAAGTTAGTCTGAAAAATATTGCCATCCCAGTAACAGTAAAATCATTATGGCCTTGCAGGACACAACCGAGCTTTCCCAGGGTTGAGCAGTGATTCTGACA                                                                                      ]
[-] EMBL OSS14167A            [                                                                                                                                             ctAAGAAGGTCGAAAGAAA GGAAACATCTCAAAGACCGCNAGATCCGCATAANTAAACAGCTTCAAAGACTTGACAAACTCTGCACCCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATT TGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTTGGGTCCTGTCCAGATTTCTTAATCTGCGTACCTGCTCTGGTGCATAATTTTATTCTGCACTTGTGGTATTCCACCTGCTGATGAGATTGCCAGGTGCATTGCTCTCTCATGGTTTTGGTAAGCTTTGGTGCCAACCAAAACGGGTTTTCATGGCATGACAGGATGACTGGTTCATACTTGGTGCTCGGGCCCAACATTTGTCAGTTCAGCTACTACAAACAACCGA                                                                                                                                                                                                            ]




>consensus_9565#0
CCTTTTTTTTTTTTTTTAAATCGGGGAAAAAAACACATCACAATTATTACCGAGCACCTC
TATGTACATTGTACAGGATGGGTTCCGTTTCCATATGGACATAACTCTCCATTGAAGGAA
AACCTCAATCTACAGTTGCCCTAAAAAAGGTCGAAAGAAAGGGAAACATCTCAAAGACCG
CCAGATCCGCATAAATAAACAGCTTCAAAGACTGACAAACTCTGCACCCTAACGCATAAA
ACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATTTG
TGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCTGCCCTTTGGG
TCCTGTCCAGATTTCTTAATCTGCGTACCTGCTCTGGTGCATAATTTTATTCTGCACTTG
TGGTATTCCACCTGCTGATGAGATTGCCAGGTGCATTGCTCTCTCATGGTTTTGGTAAGC
TTTGGTGCCAACCAAAACGGGTTTTCATGGCATGACAGGATGACTGGTTCATACTTGGTG
CTCGGGCCCAACATTTGTCAGTTCAGCTACTACAAACAACCGAGCATCCCGTCTAGCTGA
AAAGTTAATCTGAAAGATATTGCCATCCCAGTAACAGTAAAATCATTATGGCCTTGCAGG
ACACAACCGAGCTTTCCCAGGGTTGAGCAGTGATTCTGACATTATCCAACCCTGTTCTCT
AGCTTTCTTCTTGAAAGTTCCATAAGAGGAAGAAACAATTTTGCAGGACTCAGCTATGTG
TGCCATG

consensusID : consensus_9565#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [GCCGCTGCAATGTTCTTCGAGAACATTCTTAAATCGGGGAAAAAAACACATCACAATTAATTTAACCGAAGCCACCTCTATGTTACATTTGGTACAGGGAATGGGTTTCCCGTTTCCATTATTGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAGAAAGGTCGAAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGACTGACAAACTCTGCACCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATTTGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCT]

[+] EMBL AU225674             [GCCGCTGCAATGTTCTTCGAGAACATTCTTAAATCGGGGAAAAAAACACATCACAATTAATTTAACCGAAGCCACCTCTATGTTACATTTGGTACAGGGAATGGGTTTCCCGTTTCCATTATTGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAGAAAGGTCGAAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGACTGACAAACTCTGCACCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAACAACACAGCAGCAAACATAAACATTTGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAATCTGGAATCCCCTTGCT]




>consensus_9565#1
GCCGCTGCAATGTTCTTCGAGAACATTCTTAAATCGGGGAAAAAAACACATCACAATTAA
TTTAACCGAAGCCACCTCTATGTTACATTTGGTACAGGGAATGGGTTTCCCGTTTCCATT
ATTGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAGAAAGGTCG
AAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGACT
GACAAACTCTGCACCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAA
CAACACAGCAGCAAACATAAACATTTGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAA
TCTGGAATCCCCTTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9565#0      -------------CCTTTTTTTTTTTTTTTAAATCGGGGAAAAAAACACATCACAATTAT 47
consensus_9565#1      GCCGCTGCAATGTTCTTCGAGAACATTCTTAAATCGGGGAAAAAAACACATCACAATTAA 60
                                    ***        ** ******************************* 

consensus_9565#0      T---ACCGAG--CACCTCTATGT-ACATT--GTACAGG--ATGGGTT--CCGTTTCCATA 95
consensus_9565#1      TTTAACCGAAGCCACCTCTATGTTACATTTGGTACAGGGAATGGGTTTCCCGTTTCCATT 120
                      *   *****   *********** *****  *******  *******  ********** 

consensus_9565#0      --TGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAAAAAGGTCG 153
consensus_9565#1      ATTGGACATAACTCTCCATTGAAGGAAAACCTCAATCTACAGTTGCCCTAAGAAAGGTCG 180
                        ************************************************* ********

consensus_9565#0      AAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGACT 213
consensus_9565#1      AAAGAAAGGGAAACATCTCAAAGACCGCCAGATCCGCATAAATAAACAGCTTCAAAGACT 240
                      ************************************************************

consensus_9565#0      GACAAACTCTGCACCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAA 273
consensus_9565#1      GACAAACTCTGCACCCTAACGCATAAAACCGGTTACAGTAGGGCGGCTAAGCCAAGCGAA 300
                      ************************************************************

consensus_9565#0      CAACACAGCAGCAAACATAAACATTTGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAA 333
consensus_9565#1      CAACACAGCAGCAAACATAAACATTTGTGCCTCTGATATGTGCAAGCTAACGGCTGGAAA 360
                      ************************************************************

consensus_9565#0      TCTGGAATCCCCTTGCTGCCCTTTGGGTCCTGTCCAGATTTCTTAATCTGCGTACCTGCT 393
consensus_9565#1      TCTGGAATCCCCTTGCT------------------------------------------- 377
                      *****************                                           

consensus_9565#0      CTGGTGCATAATTTTATTCTGCACTTGTGGTATTCCACCTGCTGATGAGATTGCCAGGTG 453
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      CATTGCTCTCTCATGGTTTTGGTAAGCTTTGGTGCCAACCAAAACGGGTTTTCATGGCAT 513
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      GACAGGATGACTGGTTCATACTTGGTGCTCGGGCCCAACATTTGTCAGTTCAGCTACTAC 573
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      AAACAACCGAGCATCCCGTCTAGCTGAAAAGTTAATCTGAAAGATATTGCCATCCCAGTA 633
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      ACAGTAAAATCATTATGGCCTTGCAGGACACAACCGAGCTTTCCCAGGGTTGAGCAGTGA 693
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      TTCTGACATTATCCAACCCTGTTCTCTAGCTTTCTTCTTGAAAGTTCCATAAGAGGAAGA 753
consensus_9565#1      ------------------------------------------------------------
                                                                                  

consensus_9565#0      AACAATTTTGCAGGACTCAGCTATGTGTGCCATG 787
consensus_9565#1      ----------------------------------