These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 669 fasta sequence [AGAGATACAGAAGAAGAGATGAGGATGAGAGCAAGAGGCATGTTTCTGAGATTGATGTCGAGAGAGAGGAAGAGTGCGGGATTTGCATGGAGATGAATAACAAGGTTGTCTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCAGTCCTGCCCCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATCTTCTATGCCTATGATTCTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTCATAATTGTTTTCGGAGAGTGACGCATGTCTTATTCATTCATGCAGAGGATGTTCCTTGTCGTAGGATGTGGCTAACCCCAGGAGCAGACTGAACTTTGACAAGAGAACTTGTGAATTCTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAA-TTTG-CAGTGTAAAAAAATTAGTGAGGAAAAACCTTGTGTTCCACATTGAACTCCTAGTGTGAAATTCCAAGTACATAAA--------AAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK060662 [AGAGATACAGAAGAAGAGATGAGGATGAGAGCAAGAGGCATGTTTCTGAGATTGATGTCGAGAGAGAGGAAGAGTGCGGGATTTGCATGGAGATGAATAACAAGGTTGTCTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCAGTCCTGCCCCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATCTTCTATGCCTATGATTCTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTCATAATTGTTTTCGGAGAGTGACGCATGTCTTATTCATTCATGCAGAGGATGTTCCTTGTCGTAGGATGTGGCTAACCCCAGGAGCAGACTGAACTTTGACAAGAGAACTTGTGAATTCTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAA TTTG CAGTGTAAAAAAATTAGTGAGGAAAAACCTTGTG ] [+] EMBL CA765789 [AGAGATACAGAAGAAGAGATGAGGATGAGAGCAAGAGGCATGTTTCTGAGATTGATGTCGAGAGAGAGGAAGAGTGCGGGATTTGCATGGAGATGAATAACAAGGTTGTCTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCAGTCCTGCCCCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATCTTCTATGCCTATGATTCTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTCATAATTGTTTTCGGAGAGTGACGCGTGTCTTATTCATTCATGCAGAGGATGTTCCTTGTCGTAGGATGTGGCTAAACCCAGGAGCAGACTGAACTTTGACAAGAGAACTTGTGAATTCTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAATTTTG CAGTGT AAAAAATTAGTGAG ] [+] EMBL AU097078 [ CATGGAG TGAATAACAAGGTTGTCTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCAGTCCTGCCCCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGANCCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATCTTCTATGCCTATGATTCTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTCATAATTGTTTTCGGAGAGTGACGCATGTCTTATTCATTCATGCAGAGGGTGTTCCTTGTCGTAGGATGTGGCTAACCCCAGGAGCAGACTGAACTTTGACAAGAGAACTTGTGAATTCTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAA TTTG CAGTGTAAAAAAATTAGTGAGGAAAAACCTTGTGTTCCACATTGAACTCCTAGTGTGAAATTCCAAGTACATAAA AAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU174221 [ gattntCATAGGATGTTCCTTGTCGTAGGATGTGGCTAACCCCAGGAGCAGACTGAACTTTGACAANAGAACTTGTGAATTNTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAA TTTGCCAGTGTAAAAAAATTAGTGAGGAAAAACCTTGTGTTCCCCATTGAACTCCTAGTGTGAAATTCCAAGTACATATATGCTCNTTAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_9569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [ACGAGACAAGGGGCATGTTTCTTAGATTGATGTCGAGAGAGAGGAAGAGTGCGGGATTTGCATGGAGATGAATAACAAGGTTGTTTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATTCCAGTCCTGCCCCTTTTGCCGTGACAGCCTCAAAAGAGTAAATTTTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATTTTCTATGCCTATGATTTTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTTATAATTGTTTTTGGAGAGTGACGCATGTGGTGTTCATTCATGCAGAGGATGTTCCTTGTTGTAGGATGTGGCTAAACCCAGGAGCAGACTGAACTTTGGCAAGAGAACTTGTGAATTTTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAATTTGCAATGTAAAAAAATTAGTGAGGAAAAACCTTGTGTTCCCCCTTGAAAAAAAAAAAAAA] [-] EMBL CA759852 [ACGAGACAAGGGGCATGTTTCTTAGATTGATGTCGAGAGAGAGGAAGAGTGCGGGATTTGCATGGAGATGAATAACAAGGTTGTTTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATTCCAGTCCTGCCCCTTTTGCCGTGACAGCCTCAAAAGAGTAAATTTTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATTTTCTATGCCTATGATTTTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTTATAATTGTTTTTGGAGAGTGACGCATGTGGTGTTCATTCATGCAGAGGATGTTCCTTGTTGTAGGATGTGGCTAAACCCAGGAGCAGACTGAACTTTGGCAAGAGAACTTGTGAATTTTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAATTTGCAATGTAAAAAAATTAGTGAGGAAAAACCTTGTGTTCCCCCTTGAAAAAAAAAAAAAA] consensusID : consensus_9569#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [GTNCCGGGATTCTCCATGGAGGATGAATATACACAGGGTGTCTTTGCCCAACTCGCACCAATGCTATGTGCACATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCACGTCCTGCCCCTTCTGCCGTGACCGCCTCCAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACCACGATGACCGAGATGTCACTTGACCTGGCCAACGATTACTAGAGAGAACCTTAGGCNCCTGTTTATAGTACCTTGAGAAGCTGCCTCCTTGTTGCTCCGGACAAACAATCTTCTATGCCTATGATTCTCCATAGGATAGTTCCCTTGGTCGTAGGATGTGGCTAACCCCCGGACCCGACTGAACTTTGACCAGAGAACTTGTGAATTCTGACTAGATCCCATGCTGTGGTCAGATGTTGTAAATGCTTGTNCAGATTTGTAATTTCCCGTGTAAAAAAATTAGTGAGGAAAAACCCNTGTGTTCCCCCTTGAACTCCTAGTGTGAAATTCCCAGTACATATATGCTCCTTAAAAAAAAAA] [+] EMBL BI807186 [GTNCCGGGATTCTCCATGGAGGATGAATATACACAGGGTGTCTTTGCCCAACTCGCACCAATGCTATGTGCACATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCACGTCCTGCCCCTTCTGCCGTGACCGCCTCCAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACCACGATGACCGAGATGTCACTTGACCTGGCCAACGATTACTAGAGAGAACCTTAGGCNCCTGTTTATAGTACCTTGAGAAGCTGCCTCCTTGTTGCTCCGGACAAACAATCTTCTATGCCTATGATTCTCCATAGGATAGTTCCCTTGGTCGTAGGATGTGGCTAACCCCCGGACCCGACTGAACTTTGACCAGAGAACTTGTGAATTCTGACTAGATCCCATGCTGTGGTCAGATGTTGTAAATGCTTGTNCAGATTTGTAATTTCCCGTGTAAAAAAATTAGTGAGGAAAAACCCNTGTGTTCCCCCTTGAACTCCTAGTGTGAAATTCCCAGTACATATATGCTCCTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9569#0 AGAGATACAGAAGAAGAGATGAGGATGAGAGCAAGAGGCATGTTTCTGAGATTGATGTCG 60 consensus_9569#1 ------------------------ACGAGA-CAAGGGGCATGTTTCTTAGATTGATGTCG 35 consensus_9569#2 ------------------------------------------------------------ consensus_9569#0 AGAGAGAGGAAGAGTGCGGGATT-TGCATGGAG-ATGAATA---ACAAGGTTGTCTTGCC 115 consensus_9569#1 AGAGAGAGGAAGAGTGCGGGATT-TGCATGGAG-ATGAATA---ACAAGGTTGTTTTGCC 90 consensus_9569#2 ------------GTNCCGGGATTCTCCATGGAGGATGAATATACACAGGGTGTCTTTGCC 48 ******* * ******* ******* *** *** ***** consensus_9569#0 CAACT-GCAGCCATGCTATGTGCA--TGAAGTGTTACCGTCAATGGCGCTCAAGATCCCA 172 consensus_9569#1 CAACT-GCAGCCATGCTATGTGCA--TGAAGTGTTACCGTCAATGGCGCTCAAGATTCCA 147 consensus_9569#2 CAACTCGCACCAATGCTATGTGCACATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCA 108 ***** *** * ************ ****************************** *** consensus_9569#0 -GTCCTGCCCCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGTGATCTGTGGATGC 231 consensus_9569#1 -GTCCTGCCCCTTTTGCCGTGACAGCCTCAAAAGAGTAAATTTTGGTGATCTGTGGATGC 206 consensus_9569#2 CGTCCTGCCCCTTCTGCCGTGACCGCCTCCAAAGAGTAAATTCTGGTGATCTGTGGATGC 168 ************ ********* ***** ************ ***************** consensus_9569#0 TCACA--GATGACCGAGATGTCA-TTGACATGGC-AACGATTACTAGAGAGAACCTTAGG 287 consensus_9569#1 TCACA--GATGACCGAGATGTCA-TTGACATGGC-AACGATTACTAGAGAGAACCTTAGG 262 consensus_9569#2 TCACCACGATGACCGAGATGTCACTTGACCTGGCCAACGATTACTAGAGAGAACCTTAGG 228 **** **************** ***** **** ************************* consensus_9569#0 CGCCTGTTTAT-GTACATTGAGAAGCTGCCTC-TTGTTGCTCCGGACAAC--ATCTTCTA 343 consensus_9569#1 CGCCTGTTTAT-GTACATTGAGAAGCTGCCTC-TTGTTGCTCCGGACAAC--ATTTTCTA 318 consensus_9569#2 CNCCTGTTTATAGTACCTTGAGAAGCTGCCTCCTTGTTGCTCCGGACAAACAATCTTCTA 288 * ********* **** *************** **************** ** ***** consensus_9569#0 TGCCTATGATTCTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTCATAATTGTT 403 consensus_9569#1 TGCCTATGATTTTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTTATAATTGTT 378 consensus_9569#2 TGCCTATGATTCTC-CATAGGATA------------------------------------ 311 *********** ** ** *** consensus_9569#0 TTCGGAGAGTGACGCATGTCTTATTCATTCATGCAGAGGATGTTCCTTGTCGTAGGATGT 463 consensus_9569#1 TTTGGAGAGTGACGCATGTGGTGTTCATTCATGCAGAGGATGTTCCTTGTTGTAGGATGT 438 consensus_9569#2 ----------------------GTTC-----------------CCTTGGTCGTAGGATGT 332 *** * * ** ********* consensus_9569#0 GGCTAACCCCAGGAGCAGACTGAACTTTGACAAGAGAACTTGTGAATTCTGACTAGATCC 523 consensus_9569#1 GGCTAAACCCAGGAGCAGACTGAACTTTGGCAAGAGAACTTGTGAATTTTGACTAGATCC 498 consensus_9569#2 GGCTAACCCCCGGACCCGACTGAACTTTGACCAGAGAACTTGTGAATTCTGACTAGATCC 392 ****** *** *** * ************ * **************** *********** consensus_9569#0 AATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAATTTGCAGTGTAAAAAAA 583 consensus_9569#1 AATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAATTTGCAATGTAAAAAAA 558 consensus_9569#2 CATGCTGTGGTCAGATGTTGTAAATGCTTGTNCAGATTTGTAATTTCCCGTGTAAAAAAA 452 ****************************** ************** * ********** consensus_9569#0 TTAGTGAGGAAAAACC-TTGTGTTCCACATTGAACTCCTAGTGTGAAATTCCAAGTACAT 642 consensus_9569#1 TTAGTGAGGAAAAACC-TTGTGTTCCCCCTTGAAAAAAAAAAAAAA-------------- 603 consensus_9569#2 TTAGTGAGGAAAAACCCNTGTGTTCCCCCTTGAACTCCTAGTGTGAAATTCCCAGTACAT 512 **************** ******** * ***** * * consensus_9569#0 AAAAAAAAAAAAAAAAAAAAAAAAAAA 669 consensus_9569#1 --------------------------- consensus_9569#2 ATATGCTCCTTAAAAAAAAAA------ 533 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||