|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1733 fasta sequence
[CCTCCCCCCTCCTCCTCTTTCTCTCTCCTCCCCTTCTCCTCTCTCTCTCCTTCCGCTGATTCCGTCACCGCCTCTCTCCCGCCGCCCACGCGGCCACCGGAACCCGCCGCCGGGGACGGCGAATCCGGGGCGGCCCCGCCCCGAATCGGCGCCGCCCGCTCCCAGATCTCCCACCCCTTCCCCGGGGGCGCCTCCGCATGTCATGAGCCGCCCCCATTTGCCCAAAGACGACCACGCCTGCGCCAATGGGTTCTTGTTCGACGGCGTGGCCCGCCGCCCCGGCGAGATCGAGGAGGCGGCCGCCTTCGCCGCCGCCGCCGACGTGGCCATCACCATAGCCGCCGAGCAGTCCGGGTCCCCCTCGTCGTCCACGGCGCCGCCGATGTCGTCGTGCGGGCAGTACATGCTCCACCGGGTGGGCAAGCTCGACACCCTCGCCGGGATCGCTATCAAGTACGGCGTCGAGGTAGCGGACATCAAGAGGCTGAATGGCCTATCAACTGACCTCCAGATGTTTGCGCACAAGACGCTGCGGATTCCGCTCCCCGGGAGGCATCCTCCGTCGACTTACCAGCAGAACGGTTCATATGAGGGTGATGACAGGGAATGTACTCCTCCACGTCGCCTTCATGATGATATATTGGATTCAGTTTTGAGAACACCAAAGCACAAGGCTTCACCAGCCATGAGCCTTCTGCAGGGGTACTATGGTCTCACACCACCTCCAAAGAAGGATACGACACATGAAGGCACAGAAATGGCAGTATATAGAAAAGGAAAATCTGTTTTCTTGGATGATGACCCATGGTTTGGAGAGCCGCCAGATTCCGACCCATTCCCTTTTCAACATAGGAAAACTAGAAGTCTTGCAATAGGTTCTTCTCTTCTGAATGGCGAGACTGAGGAGAATGGCGACAGCGAAAAGTTGATAAGGCGACGCCAGAAAGCTGATGGTGAGTTGTTACCTAGGGAAGAAAATGGTAGTAGTGCTGTCCTAGCAAGGGCTGGGAAAGGCCTGGCGTTGAGGCCTAAGTCGGGCAGTCGACAAGATTTGAACAAGAGCCAGCAGAATCTCATTGCATTGGCGGAGCCTTCTTTCGGTGATGGGTTGCATGCTGTAAGGAAATCGTCGAGCACTCCGGAGTTCCAAGAGCCAGAGAGCAACAGCAGCAGCACCAGTTCCTCCATATGGTCG-ACAAGCAAGTGGACCTTAAAACCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGCTTATAGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCCCGGAGGAGCTTCGGTTGACAACAGCTCTTCTGAGAGTTGGAAGCAGAGCAGAGGACCTTGTGGACCTTGGTTACTT-CTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTATTCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATGTGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATTTACCTTCCAAAAAAAA]
[+] EMBL AK070826 [CCTCCCCCCTCCTCCTCTTTCTCTCTCCTCCCCTTCTCCTCTCTCTCTCCTTCCGCTGATTCCGTCACCGCCTCTCTCCCGCCGCCCACGCGGCCACCGGAACCCGCCGCCGGGGACGGCGAATCCGGGGCGGCCCCGCCCCGAATCGGCGCCGCCCGCTCCCAGATCTCCCACCCCTTCCCCGGGGGCGCCTCCGCATGTCATGAGCCGCCCCCATTTGCCCAAAGACGACCACGCCTGCGCCAATGGGTTCTTGTTCGACGGCGTGGCCCGCCGCCCCGGCGAGATCGAGGAGGCGGCCGCCTTCGCCGCCGCCGCCGACGTGGCCATCACCATAGCCGCCGAGCAGTCCGGGTCCCCCTCGTCGTCCACGGCGCCGCCGATGTCGTCGTGCGGGCAGTACATGCTCCACCGGGTGGGCAAGCTCGACACCCTCGCCGGGATCGCTATCAAGTACGGCGTCGAGGTAGCGGACATCAAGAGGCTGAATGGCCTATCAACTGACCTCCAGATGTTTGCGCACAAGACGCTGCGGATTCCGCTCCCCGGGAGGCATCCTCCGTCGACTTACCAGCAGAACGGTTCATATGAGGGTGATGACAGGGAATGTACTCCTCCACGTCGCCTTCATGATGATATATTGGATTCAGTTTTGAGAACACCAAAGCACAAGGCTTCACCAGCCATGAGCCTTCTGCAGGGGTACTATGGTCTCACACCACCTCCAAAGAAGGATACGACACATGAAGGCACAGAAATGGCAGTATATAGAAAAGGAAAATCTGTTTTCTTGGATGATGACCCATGGTTTGGAGAGCCGCCAGATTCCGACCCATTCCCTTTTCAACATAGGAAAACTAGAAGTCTTGCAATAGGTTCTTCTCTTCTGAATGGCGAGACTGAGGAGAATGGCGACAGCGAAAAGTTGATAAGGCGACGCCAGAAAGCTGATGGTGAGTTGTTACCTAGGGAAGAAAATGGTAGTAGTGCTGTCCTAGCAAGGGCTGGGAAAGGCCTGGCGTTGAGGCCTAAGTCGGGCAGTCGACAAGATTTGAACAAGAGCCAGCAGAATCTCATTGCATTGGCGGAGCCTTCTTTCGGTGATGGGTTGCATGCTGTAAGGAAATCGTCGAGCACTCCGGAGTTCCAAGAGCCAGAGAGCAACAGCAGCAGCACCAGTTCCTCCATATGGTCG ACAAGCAAGTGGACCTTAAAACCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGCTTATAGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCCCGGAGGAGCTTCGGTTGACAACAGCTCTTCTGAGAGTTGGAAGCAGAGCAGAGGACCTTGTGGACCTTGGTTACTT CTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTATTCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATGTGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTA ]
[+] EMBL AU101003 [ CCGCCGCCGACGTGGCCATCACCATAGCCGCCGAGCAGTCCGGGTCCCCCTCGTCGTCCACGGCGCCGCCGATGTCGTCGTGCGGGCAGTACATGCTCCACCGGGTGGGCAAGCTCGACACCCTCGCCGGGATCGCTATCAAGTACGGCGTCGAGGTAGCGGACATCAAGAGGCTGAATGGCCTATCAACTGACCTCCAGATGTTTGCGCACAAGACGCTGCGGATTCCGCTCCCCGGGAGGCATCCTCCGTCGACTTACCAGCAGAACGGTTCATATGAGGGTGATGACAGGGAATGTACTCCTCCACGTCGCCTTCATGATGATATATTGGATTCAGTTTTGAGAACACCAAAGCACAAGGCTTCACCAGCCATGAGCCTTCTGCAGGGGTACTATGGTCTCACACCACCTCCAAAGAAGGATACGACACATGAAGGCACAGAAATGGCAGTATATAGAAAAGGAAAATCTGTTTTCTTGGATGATGACCCATGGTT ]
[+] EMBL CA997912 [ AGTATATAGAAAAGGAAAATCTGTTTTCTTGGATGATGACCCATGGTTTGGAGAGCCGCCAGATTCCGACCCATTCCCTTTTCAACATAGGAAAACTAGAAGTCTTGCAATAGGTTCTTCTCTTCTGAATGGCGAGACTGAGGAGAATGGCGACAGCGAAAAGTTGATAAGGCGACGCCAGAAAGCTGATGGTGAGTTGTTACCTAGGGAAGAAAATGGTAGTAGTGCTGTCCTAGCAAGGGCTGGGAAAGGCCTGGCGTTGAGGCCTAAGTCGGGCAGTCGACAAGATTTGAACAAGAGCCAGCAGAATCTCATTGCATTGGCGGAGCCTTCTTTCGGTGATGGGTTGCATGCTGTAAGGAAATCGTCGAGCACTCCGGAGTTCCAAGAGCCAGAGAGCAACAGCAGCAGCACCAGTTCCTCCATATGGTCG ACAAGCAAGTGGACCTTAAAACCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGCTTA ]
[-] EMBL CB965012 [ CTCCATAT GTCGTACAAGCAAGTGTACCTTGAAACCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCTAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGCTTATAGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCA CCCCCGGAGGAGCTTCGGTTGACAACAGCTCTTCTGAGAGATGGAAGCAGAGCAGAGGACCTTGTGGACCTTGGTTACTT CTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTATTCTTTTGTACACCAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATGTGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATT ]
[+] EMBL C97770 [ CACCCCCCGGAGNAGCCTCGGTTGACAACAGCTCTTCTGANAGTTGGAAACAGAGCAGAGGACCTTGTGGACCTTGGTTACTTCCTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGANCCTTGGATACTGAGGGTATTCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATGTGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATTTACCTTCCAAAAAAAA]
consensusID : consensus_9578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[CGTTGGCACAAACGCCGAGCACATTGTCCTTCCATTGTGCGACCGTTCGTGCGCGAACGGGCTGCGCGGGTAAGGAGTGCTGCGGGCTCTCGCTACTTCCAAGACCCACAGACTCGCGCCGGCCAGCCGCGGTTCGCTCCGGATGGTCGACAAGCAAGTGGTCCTTAAAGCCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGGTTATAGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCCGGAGGAGCTTCGGTTGACAACAGCTCTTCTGAGAGATGGAAGCAGAGCAGAGGACCTTGTGGACCTTGGTTACTTCTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTATTCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATGTGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATTTACCTTCCAAAAAAAAAAAAAA]
[-] EMBL CA759208 [CGTTGGCACAAACGCCGAGCACATTGTCCTTCCATTGTGCGACCGTTCGTGCGCGAACGGGCTGCGCGGGTAAGGAGTGCTGCGGGCTCTCGCTACTTCCAAGACCCACAGACTCGCGCCGGCCAGCCGCGGTTCGCTCCGGATGGTCGACAAGCAAGTGGTCCTTAAAGCCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGACAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGGTTATAGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCCGGAGGAGCTTCGGTTGACAACAGCTCTTCTGAGAGATGGAAGCAGAGCAGAGGACCTTGTGGACCTTGGTTACTTCTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGGTTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTAGCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTATTCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATGTGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATTTACCTTCCAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9578#0 CCTCCCCCCTCCTCCTCTTTCTCTCTCCTCCCCTTCTCCTCTCTCTCTCCTTCCGCTGAT 60
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 TCCGTCACCGCCTCTCTCCCGCCGCCCACGCGGCCACCGGAACCCGCCGCCGGGGACGGC 120
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 GAATCCGGGGCGGCCCCGCCCCGAATCGGCGCCGCCCGCTCCCAGATCTCCCACCCCTTC 180
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 CCCGGGGGCGCCTCCGCATGTCATGAGCCGCCCCCATTTGCCCAAAGACGACCACGCCTG 240
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 CGCCAATGGGTTCTTGTTCGACGGCGTGGCCCGCCGCCCCGGCGAGATCGAGGAGGCGGC 300
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 CGCCTTCGCCGCCGCCGCCGACGTGGCCATCACCATAGCCGCCGAGCAGTCCGGGTCCCC 360
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 CTCGTCGTCCACGGCGCCGCCGATGTCGTCGTGCGGGCAGTACATGCTCCACCGGGTGGG 420
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 CAAGCTCGACACCCTCGCCGGGATCGCTATCAAGTACGGCGTCGAGGTAGCGGACATCAA 480
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 GAGGCTGAATGGCCTATCAACTGACCTCCAGATGTTTGCGCACAAGACGCTGCGGATTCC 540
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 GCTCCCCGGGAGGCATCCTCCGTCGACTTACCAGCAGAACGGTTCATATGAGGGTGATGA 600
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 CAGGGAATGTACTCCTCCACGTCGCCTTCATGATGATATATTGGATTCAGTTTTGAGAAC 660
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 ACCAAAGCACAAGGCTTCACCAGCCATGAGCCTTCTGCAGGGGTACTATGGTCTCACACC 720
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 ACCTCCAAAGAAGGATACGACACATGAAGGCACAGAAATGGCAGTATATAGAAAAGGAAA 780
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 ATCTGTTTTCTTGGATGATGACCCATGGTTTGGAGAGCCGCCAGATTCCGACCCATTCCC 840
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 TTTTCAACATAGGAAAACTAGAAGTCTTGCAATAGGTTCTTCTCTTCTGAATGGCGAGAC 900
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 TGAGGAGAATGGCGACAGCGAAAAGTTGATAAGGCGACGCCAGAAAGCTGATGGTGAGTT 960
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 GTTACCTAGGGAAGAAAATGGTAGTAGTGCTGTCCTAGCAAGGGCTGGGAAAGGCCTGGC 1020
consensus_9578#1 ------------------------------------------------------------
consensus_9578#0 GTTGAGGCCTAAGTCGGGCAGTCGACAAGATTTGAACAAGAGCC-AGCAGAATCTCATTG 1079
consensus_9578#1 ----------------------------CGTTGGCACAAACGCCGAGCACATTGTCCTTC 32
** * **** *** **** * * ** **
consensus_9578#0 CATTGGCGGAGCCTTCTTTCGGTGATGGGTTGCATGCTGTAAGGAAATCGTCGAGCACTC 1139
consensus_9578#1 CATTGTGCGACCGTTCGTGCGCGAACGGGCTGCGCGG-GTAAGGAGTGCTGCGGGCTCTC 91
***** ** * *** * ** * *** *** * ******* * ** ** ***
consensus_9578#0 CGGAGTTCCAAGAGCCAGAGAGCAACAGCAGC-AGCACCAGTTC-CTCCATATGGTCGAC 1197
consensus_9578#1 GCTACTTCCAAGACCCACAGACTCGCGCCGGCCAGCCGCGGTTCGCTCCGGATGGTCGAC 151
* ******** *** *** * * ** *** * **** **** *********
consensus_9578#0 AAGCAAGTGGACCTTAAAACCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGA 1257
consensus_9578#1 AAGCAAGTGGTCCTTAAAGCCAGACGCTTTCACTCTCCCTCTTCCCCTCCCTCTTTTTGA 211
********** ******* *****************************************
consensus_9578#0 CAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGCTTAT 1317
consensus_9578#1 CAACATTCCAAAGCCAATCGCTGCTTGGAGAAACAAGGCGGCTCGAGATTAGTAGGTTAT 271
******************************************************* ****
consensus_9578#0 AGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCCCGGAG 1377
consensus_9578#1 AGTCTCTTGGTTTTGCACAACTCCTGTTCTAAAGCAAGGCCCTGTAAGCACCCCC-GGAG 330
******************************************************* ****
consensus_9578#0 GAGCTTCGGTTGACAACAGCTCTTCTGAGAGTTGGAAGCAGAGCAGAGGACCTTGTGGAC 1437
consensus_9578#1 GAGCTTCGGTTGACAACAGCTCTTCTGAGAGATGGAAGCAGAGCAGAGGACCTTGTGGAC 390
******************************* ****************************
consensus_9578#0 CTTGGTTACTTCTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGG 1497
consensus_9578#1 CTTGGTTACTTCTTCCTGGGTGGCTGGAGCACAACTCAGGAAGATCAAACACAGAGATGG 450
************************************************************
consensus_9578#0 TTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTA 1557
consensus_9578#1 TTCAGAGATTAGCTTCTGTTTTATGGTTCCCTTGTTATATTGGAGATGTTGCAACGAGTA 510
************************************************************
consensus_9578#0 GCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTAT 1617
consensus_9578#1 GCAGCATCAGTTTCTTCAGTTAAGTTATAGATGACACAGAGCCTTGGATACTGAGGGTAT 570
************************************************************
consensus_9578#0 TCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATG 1677
consensus_9578#1 TCTTTTGTACACAAATGCAGATAAATGTAGGGATCGAAAGGCGGCTATATATGTTGTATG 630
************************************************************
consensus_9578#0 TGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATTTACCTTCCAAAAAAAA---- 1733
consensus_9578#1 TGTGAGAACTTCGCTGATATAGAAAAGTATCGTCATTATTTACCTTCCAAAAAAAAAAAA 690
********************************************************
consensus_9578#0 --
consensus_9578#1 AA 692
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||