cluster # 9583

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Oryza sativa
cluster # 9583 cluster # 9583 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9583#0 length = 730 sequences # 4

consensus_9583#1 length = 683 sequences # 1
consensus_9583#2 length = 534 sequences # 1

consensusID : consensus_9583#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 730
fasta sequence

                              [TCCTCTAGTCCTCGCGAGTCGCGACACGCGGAGCTTTGGCACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGC-AGGCAGGGGCGGGATTATCCTGTGAAGGTGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTC-AGCGGGC-AGCC-GGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCA-TTCA-GAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTACTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAATATACTTGATTGGAAGCTAAACCGCACCTAAACCCCTTAAAACTATATTAAGGTGATGG]

[+] EMBL AK106623             [TCCTCTAGTCCTCGCGAGTCGCGACACGCGGAGCTTTGGCACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGC AGGCAGGGGCGGGATTATCCTGTGAAGGTGAGCGGAGTAGAGATCGTCCCTGACCCCGTCGTC AGCGGGC AGCC GGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCA TTCA GAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGCGCAGGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTACTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCC                                                                       ]
[+] EMBL CA755534             [    CTAGTCCTCGCGAGTCGCGACACGCGGAGCTTTGGCACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGC AGGCAGGGGCGGGATTATCCTGTGAAGGTGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTC AGCGGGC AGCC GGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCA TTCA GAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGTGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTTCTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAATATACTTGATTGGAAGCTAAACCGCACCTAAACCCCTTAAAACTATATTAAGGTGATGG]
[+] EMBL OSC895               [    CTAGTCCTCGCGAGTCGCGACACGCGGAGCTTTGGCACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTNCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGC AGGCAGGGGCGGGATTATCCTGTGAAGGTGAGCGGAGTNGAGATCGTCCCTGACCCCGTCGTC AGCGGGC AGCC GGCCACCTTCAAGATCTNCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTNCATTTCAGGAAAGT                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU101343             [                                                                                                                                             TCGAGTACTGCAAGNCAGGGCCGGNATTATCCTGTNAAGGTGACCGAAGTGAAGATCGTCCNTGACCCCGTCGTCAAGCGGNCAAGCCGGGCCACCTTCAAGATCTCGGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCA TTCA GAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTACTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAGTATAaaaa                                                   ]




>consensus_9583#0
TCCTCTAGTCCTCGCGAGTCGCGACACGCGGAGCTTTGGCACCTGCAGCGATGGCGACCG
ACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGG
CCTCCGCCGCGGCCACCGACGTCGAGTACTGCAGGCAGGGGCGGGATTATCCTGTGAAGG
TGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGGCAGCCGGCCACCTTCAAGA
TCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACT
TCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAA
CTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTT
ACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTG
GGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGC
AATGTACTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAAT
CTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCG
CTTATGTTCAATATACTTGATTGGAAGCTAAACCGCACCTAAACCCCTTAAAACTATATT
AAGGTGATGG

consensusID : consensus_9583#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [ACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGCAGGCAGGGGCGGGATTATCCTGTGAAGGTGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGGCAGCCGGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGTGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTTCTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAATCTNCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAGTATACTGGATTGGGCCNANNANANNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL BE041055             [ACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGCAGGCAGGGGCGGGATTATCCTGTGAAGGTGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGGCAGCCGGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGTGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTTCTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAATCTNCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAGTATACTGGATTGGGCCNANNANANNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_9583#1
ACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCT
CACCCTCCTCCTCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGCAGGCAGGG
GCGGGATTATCCTGTGAAGGTGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGG
GCAGCCGGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCT
CGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGA
GGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGTGCACGAACAGACTTTACCATC
AATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGA
ACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTA
AATTCAGCTGGAGTCACAGCAATGTTCTTGCAGAACTCCCATAGTCCTACCACAACATGT
TCCACTAAAGCCGGTTTAATCTNCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCA
ATAACTATAGTCAATTGCCGCTTATGTTCAGTATACTGGATTGGGCCNANNANANNNNNN
NNNNNNNNNNNNNNNNNNNNNNN

consensusID : consensus_9583#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [ATCCTGTGAAGTGACCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGCCAGCCGGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTTCTTGCAGAACTCCCATAGTCCTACCACACATGTTCCACTAAAGCCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAGTATACTTGATTTGGACATTTGCCCCTGTAAAAA]

[+] EMBL BI796724             [ATCCTGTGAAGTGACCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGCCAGCCGGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTTCTTGCAGAACTCCCATAGTCCTACCACACATGTTCCACTAAAGCCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAGTATACTTGATTTGGACATTTGCCCCTGTAAAAA]




>consensus_9583#2
ATCCTGTGAAGTGACCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGCCAGCCGGC
CACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGA
TGTCAAGTACTTCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTC
TTGCCCAGTAACTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCC
ACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTG
CATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCT
GGAGTCACAGCAATGTTCTTGCAGAACTCCCATAGTCCTACCACACATGTTCCACTAAAG
CCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAG
TCAATTGCCGCTTATGTTCAGTATACTTGATTTGGACATTTGCCCCTGTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9583#1      ----------------------------------------ACCTGCAGCGATGGCGACCG 20
consensus_9583#2      ------------------------------------------------------------
consensus_9583#0      TCCTCTAGTCCTCGCGAGTCGCGACACGCGGAGCTTTGGCACCTGCAGCGATGGCGACCG 60
                                                                                  

consensus_9583#1      ACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGG 80
consensus_9583#2      ------------------------------------------------------------
consensus_9583#0      ACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGG 120
                                                                                  

consensus_9583#1      CCTCCGCCGCGGCCACCGACGTCGAGTACTGCAGGCAGGGGCGGGATTATCCTGTGAAGG 140
consensus_9583#2      ------------------------------------------------ATCCTGTGAAG- 11
consensus_9583#0      CCTCCGCCGCGGCCACCGACGTCGAGTACTGCAGGCAGGGGCGGGATTATCCTGTGAAGG 180
                                                                      *********** 

consensus_9583#1      TGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGGCAGCCGGCCACCTTCAAGA 200
consensus_9583#2      TGACCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGCCAGCCGGCCACCTTCAAGA 71
consensus_9583#0      TGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGGCAGCCGGCCACCTTCAAGA 240
                      *** ************************************ *******************

consensus_9583#1      TCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACT 260
consensus_9583#2      TCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACT 131
consensus_9583#0      TCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACT 300
                      ************************************************************

consensus_9583#1      TCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAA 320
consensus_9583#2      TCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAA 191
consensus_9583#0      TCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAA 360
                      ************************************************************

consensus_9583#1      CTGGTGAATTCGTGCTTGTGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTT 380
consensus_9583#2      CTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTT 251
consensus_9583#0      CTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTT 420
                      ****************** *****************************************

consensus_9583#1      ACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTG 440
consensus_9583#2      ACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTG 311
consensus_9583#0      ACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTG 480
                      ************************************************************

consensus_9583#1      GGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGC 500
consensus_9583#2      GGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGC 371
consensus_9583#0      GGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGC 540
                      ************************************************************

consensus_9583#1      AATGTTCTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAAT 560
consensus_9583#2      AATGTTCTTGCAGAACTCCCATAGTCCTACCACA-CATGTTCCACTAAAGCCGGTTTAAT 430
consensus_9583#0      AATGTACTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAAT 600
                      ***** **************************** *************************

consensus_9583#1      CTNCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCG 620
consensus_9583#2      CTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCG 490
consensus_9583#0      CTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCG 660
                      ** *********************************************************

consensus_9583#1      CTTATGTTCAGTATACTGGATTGGGCCNANNANANNNNNNNNNNNNNNNNNNNNNNNNNN 680
consensus_9583#2      CTTATGTTCAGTATACTTGATTTGGACATTTGCCCCTGTAAAAA---------------- 534
consensus_9583#0      CTTATGTTCAATATACTTGATTGGAAGCTAAACCGCACCTAAACCCCTTAAAACTATATT 720
                      ********** ****** **** *                                    

consensus_9583#1      NNN------- 683
consensus_9583#2      ----------
consensus_9583#0      AAGGTGATGG 730