These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 730 fasta sequence [TCCTCTAGTCCTCGCGAGTCGCGACACGCGGAGCTTTGGCACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGC-AGGCAGGGGCGGGATTATCCTGTGAAGGTGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTC-AGCGGGC-AGCC-GGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCA-TTCA-GAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTACTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAATATACTTGATTGGAAGCTAAACCGCACCTAAACCCCTTAAAACTATATTAAGGTGATGG] [+] EMBL AK106623 [TCCTCTAGTCCTCGCGAGTCGCGACACGCGGAGCTTTGGCACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGC AGGCAGGGGCGGGATTATCCTGTGAAGGTGAGCGGAGTAGAGATCGTCCCTGACCCCGTCGTC AGCGGGC AGCC GGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCA TTCA GAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGCGCAGGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTACTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCC ] [+] EMBL CA755534 [ CTAGTCCTCGCGAGTCGCGACACGCGGAGCTTTGGCACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGC AGGCAGGGGCGGGATTATCCTGTGAAGGTGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTC AGCGGGC AGCC GGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCA TTCA GAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGTGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTTCTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAATATACTTGATTGGAAGCTAAACCGCACCTAAACCCCTTAAAACTATATTAAGGTGATGG] [+] EMBL OSC895 [ CTAGTCCTCGCGAGTCGCGACACGCGGAGCTTTGGCACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTNCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGC AGGCAGGGGCGGGATTATCCTGTGAAGGTGAGCGGAGTNGAGATCGTCCCTGACCCCGTCGTC AGCGGGC AGCC GGCCACCTTCAAGATCTNCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTNCATTTCAGGAAAGT ] [+] EMBL AU101343 [ TCGAGTACTGCAAGNCAGGGCCGGNATTATCCTGTNAAGGTGACCGAAGTGAAGATCGTCCNTGACCCCGTCGTCAAGCGGNCAAGCCGGGCCACCTTCAAGATCTCGGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCA TTCA GAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTACTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAGTATAaaaa ] consensusID : consensus_9583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [ACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGCAGGCAGGGGCGGGATTATCCTGTGAAGGTGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGGCAGCCGGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGTGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTTCTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAATCTNCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAGTATACTGGATTGGGCCNANNANANNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL BE041055 [ACCTGCAGCGATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGCAGGCAGGGGCGGGATTATCCTGTGAAGGTGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGGCAGCCGGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGTGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTTCTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAATCTNCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAGTATACTGGATTGGGCCNANNANANNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensusID : consensus_9583#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [ATCCTGTGAAGTGACCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGCCAGCCGGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTTCTTGCAGAACTCCCATAGTCCTACCACACATGTTCCACTAAAGCCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAGTATACTTGATTTGGACATTTGCCCCTGTAAAAA] [+] EMBL BI796724 [ATCCTGTGAAGTGACCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGCCAGCCGGCCACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACTTCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAACTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGCAATGTTCTTGCAGAACTCCCATAGTCCTACCACACATGTTCCACTAAAGCCGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCGCTTATGTTCAGTATACTTGATTTGGACATTTGCCCCTGTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9583#1 ----------------------------------------ACCTGCAGCGATGGCGACCG 20 consensus_9583#2 ------------------------------------------------------------ consensus_9583#0 TCCTCTAGTCCTCGCGAGTCGCGACACGCGGAGCTTTGGCACCTGCAGCGATGGCGACCG 60 consensus_9583#1 ACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGG 80 consensus_9583#2 ------------------------------------------------------------ consensus_9583#0 ACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCCTCCTCCCGG 120 consensus_9583#1 CCTCCGCCGCGGCCACCGACGTCGAGTACTGCAGGCAGGGGCGGGATTATCCTGTGAAGG 140 consensus_9583#2 ------------------------------------------------ATCCTGTGAAG- 11 consensus_9583#0 CCTCCGCCGCGGCCACCGACGTCGAGTACTGCAGGCAGGGGCGGGATTATCCTGTGAAGG 180 *********** consensus_9583#1 TGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGGCAGCCGGCCACCTTCAAGA 200 consensus_9583#2 TGACCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGCCAGCCGGCCACCTTCAAGA 71 consensus_9583#0 TGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGGCAGCCGGCCACCTTCAAGA 240 *** ************************************ ******************* consensus_9583#1 TCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACT 260 consensus_9583#2 TCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACT 131 consensus_9583#0 TCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATGTCAAGTACT 300 ************************************************************ consensus_9583#1 TCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAA 320 consensus_9583#2 TCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAA 191 consensus_9583#0 TCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTTGCCCAGTAA 360 ************************************************************ consensus_9583#1 CTGGTGAATTCGTGCTTGTGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTT 380 consensus_9583#2 CTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTT 251 consensus_9583#0 CTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCACCAGGTTCTT 420 ****************** ***************************************** consensus_9583#1 ACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTG 440 consensus_9583#2 ACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTG 311 consensus_9583#0 ACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCATCTCGTTTG 480 ************************************************************ consensus_9583#1 GGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGC 500 consensus_9583#2 GGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGC 371 consensus_9583#0 GGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGGAGTCACAGC 540 ************************************************************ consensus_9583#1 AATGTTCTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAAT 560 consensus_9583#2 AATGTTCTTGCAGAACTCCCATAGTCCTACCACA-CATGTTCCACTAAAGCCGGTTTAAT 430 consensus_9583#0 AATGTACTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGCCGGTTTAAT 600 ***** **************************** ************************* consensus_9583#1 CTNCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCG 620 consensus_9583#2 CTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCG 490 consensus_9583#0 CTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGTCAATTGCCG 660 ** ********************************************************* consensus_9583#1 CTTATGTTCAGTATACTGGATTGGGCCNANNANANNNNNNNNNNNNNNNNNNNNNNNNNN 680 consensus_9583#2 CTTATGTTCAGTATACTTGATTTGGACATTTGCCCCTGTAAAAA---------------- 534 consensus_9583#0 CTTATGTTCAATATACTTGATTGGAAGCTAAACCGCACCTAAACCCCTTAAAACTATATT 720 ********** ****** **** * consensus_9583#1 NNN------- 683 consensus_9583#2 ---------- consensus_9583#0 AAGGTGATGG 730 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||