cluster # 9585

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9585 cluster # 9585 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9585#0 length = 979 sequences # 3

consensus_9585#1 length = 779 sequences # 3

consensusID : consensus_9585#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 979
fasta sequence

                              [CCACATCTCCCTATCGTCTCCGCCGCAAGCCCGCAAGCGAAGATGGCGACGCCGGCGAACGCCACCACATTCTCCGGCGAGGTGTGGGCGGAGCTCCGCCTGGCGGACTCCAGCGACGTGCCCCACATCCACGCCCTCATCCACCAGATGGCGGAGTTCGAGCTCCTCACCGACCTCTTCGCCGCCACCCACGAGCTCCTCACCTCCACGCTCTTCCCCTCGCCGCCGCGCCCTCCCTTCACCTCCTTCACCGCCCTCATCCTCGACCTCTCCCCGTCCCCGCTCCCCGCCTCCGGCCCCTCCACCATCGCCTCCCACTGCCTCGACCTCTCCGCGTCCCCGCTCGCCGACCCGGAGGCCGCCGCCTTCGCCTCCCCTCGCGGCGGCGGGCGCGTCACCGCGGGCTTCGTGATCTGCTTCCCCAACTACTCCACCTTCCTCTCCAAGCCCGGGCTGTACGTGGAGGACATCTTCGTGCGCGCGCCGTGGCGCCGCCGCGGGCTCGGCCGGATGATGCTGTCCGCGGTGGCCGGCAAGGCCGCCGAGCTCGGGATGGGGCGCGTGGAGTGGTGCGTGCTGGACTGGAACAAGAACGCCATCGACTTCTACGAGGGGATGGGCGCCGAGGTGCTCCCGCAGTGGCGCATCTGCCGCCTCACCGGCGCTGCACTCGACAAGTACAAGGGGAACCAGGAGGAGGGGGGAGGCAGCAAGGCGGCGGAGTAGATCGGCCATGGATGGAAACGTCGATTCTTGGCTGTCCAATCTCGAGTGAGTGATTAGTGATAATAAAGGTAGTGGATTTTGGTTCCACTTATCTGCTCCTTGTGGTGATGTATTTCTTGATAGTGATTCAGTGCATTGGATCGGTTCTTCATTGCTATGAATTACAGTGATGTTTTAGCTTGATTATGTCATGAACTTGATCTGAAACATTTCGGTATCAAATTCTTGATTGAACCAAAAAAAAAAAAAAAAA]

[+] EMBL AK073240             [CCACATCTCCCTATCGTCTCCGCCGCAAGCCCGCAAGCGAAGATGGCGACGCCGGCGAACGCCACCACATTCTCCGGCGAGGTGTGGGCGGAGCTCCGCCTGGCGGACTCCAGCGACGTGCCCCACATCCACGCCCTCATCCACCAGATGGCGGAGTTCGAGCTCCTCACCGACCTCTTCGCCGCCACCCACGAGCTCCTCACCTCCACGCTCTTCCCCTCGCCGCCGCGCCCTCCCTTCACCTCCTTCACCGCCCTCATCCTCGACCTCTCCCCGTCCCCGCTCCCCGCCTCCGGCCCCTCCACCATCGCCTCCCACTGCCTCGACCTCTCCGCGTCCCCGCTCGCCGACCCGGAGGCCGCCGCCTTCGCCTCCCCTCGCGGCGGCGGGCGCGTCACCGCGGGCTTCGTGATCTGCTTCCCCAACTACTCCACCTTCCTCTCCAAGCCCGGGCTGTACGTGGAGGACATCTTCGTGCGCGCGCCGTGGCGCCGCCGCGGGCTCGGCCGGATGATGCTGTCCGCGGTGGCCGGCAAGGCCGCCGAGCTCGGGATGGGGCGCGTGGAGTGGTGCGTGCTGGACTGGAACAAGAACGCCATCGACTTCTACGAGGGGATGGGCGCCGAGGTGCTCCCGCAGTGGCGCATCTGCCGCCTCACCGGCGCTGCACTCGACAAGTACAAGGGGAACCAGGAGGAGGGGGGAGGCAGCAAGGCGGCGGAGTAGATCGGCCATGGATGGAAACGTCGATTCTTGGCTGTCCAATCTCGAGTGAGTGATTAGTGATAATAAAGGTAGTGGATTTTGGTTCCACTTATCTGCTCCTTGTGGTGATGTATTTCTTGATAGTGATTCAGTGCATTGGATCGGTTCTTCATTGCTATGAATTACAGTGATGTTTTAGCTTGATTATGTCATGAACTTGATCTGAAACATTTCGGTATCAAATTCT                           ]
[+] EMBL C74180               [     TCTCCCTATCGTCTCCGCCGCAAGCNCGCAAGCGAAGATGGCGACGCCGGCGAACG CACCANATTCTCCGGCGAGGTGTGGGCGGA NTCCGCCTGGCGGACTCCAGCGACGTGCCCCACATCCACGCCCTCATCCACCAGATGGCGGAGTTCGAGCTCCTCACCGACCTCTTCGCNGCCACCCACGAGCTCCTCACCTCCACGCTCTTCCCCTCGCCGCCGCGCNCTCCCTTCACCTCCTTNACCGCCCTCATCCTCGACCTCTCCCCGTTCCCGCTCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU101406             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCGTGCGCGCGCCGTGGCGCCGCCGCGGGCTCGGCCGGATGATGCTGTCCGCGGTGGCCGGCAAGGCCGCCGAGCTCGGGATGGGGCGCGTGGAGTGGTGCGTGCTGGACTGGAACAAGAACGCCATCGACTTCTACGAGGGGATGGGCGCCGAGGTGCTCCCGCAGTGGCGCATCTGCCGCCTCACCGGCGCTGCACTCGACAAGTACAAGGGGAACCAGGAGGAGGGGGGAGGCAGCAAGGCGGCGGAGTAGATCGGCCATGGATGGAAACGTCGATTCTTGGCTGTCCAATCTCGAGTGAGTGATTAGTGATAATAAAGGTAGTGGATTTTGGTTCCACTTATCTGCTCCTTGTGGTGATGTATTTCTTGATAGTGATTCAGTGCATTGGATCGGTTCTTCATTGCTATGAATTACAGTGATGTTTTAGCTTGATTATGTCATGAACTTGATCTGAAACATTTCGGTATCAAATTCTTGATTGAACCAAAAAAAAAAAAAAAAA]




>consensus_9585#0
CCACATCTCCCTATCGTCTCCGCCGCAAGCCCGCAAGCGAAGATGGCGACGCCGGCGAAC
GCCACCACATTCTCCGGCGAGGTGTGGGCGGAGCTCCGCCTGGCGGACTCCAGCGACGTG
CCCCACATCCACGCCCTCATCCACCAGATGGCGGAGTTCGAGCTCCTCACCGACCTCTTC
GCCGCCACCCACGAGCTCCTCACCTCCACGCTCTTCCCCTCGCCGCCGCGCCCTCCCTTC
ACCTCCTTCACCGCCCTCATCCTCGACCTCTCCCCGTCCCCGCTCCCCGCCTCCGGCCCC
TCCACCATCGCCTCCCACTGCCTCGACCTCTCCGCGTCCCCGCTCGCCGACCCGGAGGCC
GCCGCCTTCGCCTCCCCTCGCGGCGGCGGGCGCGTCACCGCGGGCTTCGTGATCTGCTTC
CCCAACTACTCCACCTTCCTCTCCAAGCCCGGGCTGTACGTGGAGGACATCTTCGTGCGC
GCGCCGTGGCGCCGCCGCGGGCTCGGCCGGATGATGCTGTCCGCGGTGGCCGGCAAGGCC
GCCGAGCTCGGGATGGGGCGCGTGGAGTGGTGCGTGCTGGACTGGAACAAGAACGCCATC
GACTTCTACGAGGGGATGGGCGCCGAGGTGCTCCCGCAGTGGCGCATCTGCCGCCTCACC
GGCGCTGCACTCGACAAGTACAAGGGGAACCAGGAGGAGGGGGGAGGCAGCAAGGCGGCG
GAGTAGATCGGCCATGGATGGAAACGTCGATTCTTGGCTGTCCAATCTCGAGTGAGTGAT
TAGTGATAATAAAGGTAGTGGATTTTGGTTCCACTTATCTGCTCCTTGTGGTGATGTATT
TCTTGATAGTGATTCAGTGCATTGGATCGGTTCTTCATTGCTATGAATTACAGTGATGTT
TTAGCTTGATTATGTCATGAACTTGATCTGAAACATTTCGGTATCAAATTCTTGATTGAA
CCAAAAAAAAAAAAAAAAA

consensusID : consensus_9585#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 779
fasta sequence

                              [CATTTGCCAGTCGCCACATCTCCCTATCGTCTCCGCCGCAAGCCCGCAAGCGAAGATGGCGACGCCGGCGAACGCCACCACATTCTCCGGCGAGGTGTGGGCGGAGCTCCGCCTGGCGGACTCCAGCGACGTGCCCCACATCCACGCCCTCGACCTCTCCGCGTCCCCGCTCGCCGACCCGGAGGCCGCCGCCTTCGCCTCCCCTCGCGGCGGCGGGCGCGTCACCGCGGGCTTCGTGATCTGCTTCCCCAACTACTCCACCTTCCTCTCCAAGCCCGGGCTGTACGTGGAGGACATCTTCGTGCGCGCGCCGTGGCGCCGCCGCGGGCTCGGCCGGATGATGCTGTCCGCGGTGGCCGGCAAGGCCGCCGAGCTCGGGATGGGGCGCGTGGAGTCCGGCGTGCTGGACTGGAA-CAAGAACGCCATCGACTTCTACGAGGGGATGGGCGCCGAGGTGCTCCCGCAGTGGCGCATCTGCCGCCTCACCGGCGCTGCACTCGACAAGTACAAGGGGAACCAGGAGGAGGGGGGAGGCAGCAAGGCGGCGGAGTAGATCGGCCATGGATGGAAACGTCGATTCTTGGCTGTCCAATCTCGAGTGAGTGATTAGTGATAATAAAGGTAGTGGATTTTGGTTCCACTTATCTGCTCCTTGTGGTGATGTATTTCTTGATAGTGATTCAGTGCATTGGATCGGTTCTTCATTGCTATGAAAAAAAAAAATGTTTTAGCTTGATTATGTCATGAACTTGATCTGAAACATTTCGGTATCAAATTCT]

[+] EMBL AK066845             [CATTTGCCAGTCGCCACATCTCCCTATCGTCTCCGCCGCAAGCCCGCAAGCGAAGATGGCGACGCCGGCGAACGCCACCACATTCTCCGGCGAGGTGTGGGCGGAGCTCCGCCTGGCGGACTCCAGCGACGTGCCCCACATCCACGCCCTCGACCTCTCCGCGTCCCCGCTCGCCGACCCGGAGGCCGCCGCCTTCGCCTCCCCTCGCGGCGGCGGGCGCGTCACCGCGGGCTTCGTGATCTGCTTCCCCAACTACTCCACCTTCCTCTCCAAGCCCGGGCTGTACGTGGAGGACATCTTCGTGCGCGCGCCGTGGCGCCGCCGCGGGCTCGGCCGGATGATGCTGTCCGCGGTGGCCGGCAAGGCCGCCGAGCTCGGGATGGGGCGCGTGGAGTGGTGCGTGCTGGACTGGAA CAAGAACGCCATCGACTTCTACGAGGGGATGGGCGCCGAGGTGCTCCCGCAGTGGCGCATCTGCCGCCTCACCGGCGCTGCACTCGACAAGTACAAGGGGAACCAGGAGGAGGGGGGAGGCAGCAAGGCGGCGGAGTAGATCGGCCATGGATGGAAACGTCGATTCTTGGCTGTCCAATCTCGAGTGAGTGATTAGTGATAATAAAGGTAGTGGATTTTGGTTCCACTTATCTGCTCCTTGTGGTGATGTATTTCTTGATAGTGATTCAGTGCATTGGATCGGTTCTTCATTGCTATGAATTACAGTGATGTTTTAGCTTGATTATGTCATGAACTTGATCTGAAACATTTCGGTATCAAATTCT]
[+] EMBL BM420247             [                                                                                                                                                                                                                                                                                                                                                                                                           CCGGCGTGCTGGACTGGAACCAAGAACGCCATCGACTTNTACGAGGGGATGGGCGCCGAGGTGCTCCCGCAGTGGCGCATCTGCCGCCTCACCGGCGCTGCACTCGACAAGTACAAGGGGAACCAGGAGGAGGGGGGAGGCAGCAAGGCGGCGGAGTAGATCGGCCATGGATGGAAACGTCGATTCTTGGCTGTCCAATCTCGAGTGAGTGATTAGTGATAATAAAGGTAGTGGATTTTGGTTCCACTTATCTGCTCCTTGTGGTGATGTATTTCTTGATAGTGATTCAGTGCATTGGATCGGTTCTTCATTGCTATGAAAAAAAAAA                                                         ]
[+] EMBL BM420178             [                                                                                                                                                                                                                                                                                                                                                                                                           CCGGCGTGCTGGACTGGAA CAAGAACGCCATCGACTTCTACGAGGGGATGGGCGCCGAGGTGCTCCCGCAGTGGCGCATCTGCCGCCTCACCGGCGCTGCACTCGACAAGTACAAGGGGAACCAGGAGGAGGGGGGAGGCAGCAAGGCGGCGGAGTAGATCGGCCATGGATGGAAACGTCGATTCTTGGCTGTCCAATCTCGAGTGAGTGATTAGTGATAATAAAGGTAGTGGATTTTGGTTCCACTTATCTGCTCCTTGTGGTGATGTATTTCTTGATAGTGATTCAGTGCATTGGATCGGTTCTTCATTGCTATGAAAAAAAAAA                                                         ]




>consensus_9585#1
CATTTGCCAGTCGCCACATCTCCCTATCGTCTCCGCCGCAAGCCCGCAAGCGAAGATGGC
GACGCCGGCGAACGCCACCACATTCTCCGGCGAGGTGTGGGCGGAGCTCCGCCTGGCGGA
CTCCAGCGACGTGCCCCACATCCACGCCCTCGACCTCTCCGCGTCCCCGCTCGCCGACCC
GGAGGCCGCCGCCTTCGCCTCCCCTCGCGGCGGCGGGCGCGTCACCGCGGGCTTCGTGAT
CTGCTTCCCCAACTACTCCACCTTCCTCTCCAAGCCCGGGCTGTACGTGGAGGACATCTT
CGTGCGCGCGCCGTGGCGCCGCCGCGGGCTCGGCCGGATGATGCTGTCCGCGGTGGCCGG
CAAGGCCGCCGAGCTCGGGATGGGGCGCGTGGAGTCCGGCGTGCTGGACTGGAACAAGAA
CGCCATCGACTTCTACGAGGGGATGGGCGCCGAGGTGCTCCCGCAGTGGCGCATCTGCCG
CCTCACCGGCGCTGCACTCGACAAGTACAAGGGGAACCAGGAGGAGGGGGGAGGCAGCAA
GGCGGCGGAGTAGATCGGCCATGGATGGAAACGTCGATTCTTGGCTGTCCAATCTCGAGT
GAGTGATTAGTGATAATAAAGGTAGTGGATTTTGGTTCCACTTATCTGCTCCTTGTGGTG
ATGTATTTCTTGATAGTGATTCAGTGCATTGGATCGGTTCTTCATTGCTATGAAAAAAAA
AAATGTTTTAGCTTGATTATGTCATGAACTTGATCTGAAACATTTCGGTATCAAATTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9585#0      CCACATCTCCCTATCGTCTCCGCCGCAAGCCCGCAAGCGAAGATGGCGACGCCGGCGAAC 60
consensus_9585#1      ------------------------------------------------------------
                                                                                  

consensus_9585#0      GCCACCACATTCTCCGGCGAGGTGTGGGCGGAGCTCCGCCTGGCGGACTCCAGCGACGTG 120
consensus_9585#1      ------------------------------------------------------------
                                                                                  

consensus_9585#0      CCCCACATCCACGCCCTCATCCACCAGATGGCGGAGTTCGAGCTCCTCACCGACCTCTTC 180
consensus_9585#1      -------------------------------------------------------CATTT 5
                                                                               ** 

consensus_9585#0      GCCGCCACCCACGAGCTCCTCACCTCCACGCTCTTCCCCTCGCCGCCGCGCCCTCCCTTC 240
consensus_9585#1      GCCAGTCGCCAC-ATCTCCCTATCGTCTCCGCCGCAAGCCCGCAAGCGAAGATGGCGACG 64
                      ***     **** * ****  * *  * *   *     * ***   **       *    

consensus_9585#0      ACCTCCTTCACCGCCCTCATCCTCGACCTCTCCCCGTCCCCGCTCCCCGCCTCCGGCCCC 300
consensus_9585#1      CCGGCGAACGCCACCACATTCTCCGGCGAGGTGTGGGCGGAGCTCCGCCTGGCGGACTCC 124
                       *  *   * ** **    **  ** *        * *   ***** *    * * * **

consensus_9585#0      TCCACCATCGCCT---CCCACTGCCTCGACCTCTCCGCGTCCCCGCTCGCCGACCCGGAG 357
consensus_9585#1      AGCGACGTGCCCCACATCCACGCCCTCGACCTCTCCGCGTCCCCGCTCGCCGACCCGGAG 184
                        *  * *  **     ****  *************************************

consensus_9585#0      GCCGCCGCCTTCGCCTCCCCTCGCGGCGGCGGGCGCGTCACCGCGGGCTTCGTGATCTGC 417
consensus_9585#1      GCCGCCGCCTTCGCCTCCCCTCGCGGCGGCGGGCGCGTCACCGCGGGCTTCGTGATCTGC 244
                      ************************************************************

consensus_9585#0      TTCCCCAACTACTCCACCTTCCTCTCCAAGCCCGGGCTGTACGTGGAGGACATCTTCGTG 477
consensus_9585#1      TTCCCCAACTACTCCACCTTCCTCTCCAAGCCCGGGCTGTACGTGGAGGACATCTTCGTG 304
                      ************************************************************

consensus_9585#0      CGCGCGCCGTGGCGCCGCCGCGGGCTCGGCCGGATGATGCTGTCCGCGGTGGCCGGCAAG 537
consensus_9585#1      CGCGCGCCGTGGCGCCGCCGCGGGCTCGGCCGGATGATGCTGTCCGCGGTGGCCGGCAAG 364
                      ************************************************************

consensus_9585#0      GCCGCCGAGCTCGGGATGGGGCGCGTGGAGTGGTGCGTGCTGGACTGGAACAAGAACGCC 597
consensus_9585#1      GCCGCCGAGCTCGGGATGGGGCGCGTGGAGTCCGGCGTGCTGGACTGGAACAAGAACGCC 424
                      *******************************   **************************

consensus_9585#0      ATCGACTTCTACGAGGGGATGGGCGCCGAGGTGCTCCCGCAGTGGCGCATCTGCCGCCTC 657
consensus_9585#1      ATCGACTTCTACGAGGGGATGGGCGCCGAGGTGCTCCCGCAGTGGCGCATCTGCCGCCTC 484
                      ************************************************************

consensus_9585#0      ACCGGCGCTGCACTCGACAAGTACAAGGGGAACCAGGAGGAGGGGGGAGGCAGCAAGGCG 717
consensus_9585#1      ACCGGCGCTGCACTCGACAAGTACAAGGGGAACCAGGAGGAGGGGGGAGGCAGCAAGGCG 544
                      ************************************************************

consensus_9585#0      GCGGAGTAGATCGGCCATGGATGGAAACGTCGATTCTTGGCTGTCCAATCTCGAGTGAGT 777
consensus_9585#1      GCGGAGTAGATCGGCCATGGATGGAAACGTCGATTCTTGGCTGTCCAATCTCGAGTGAGT 604
                      ************************************************************

consensus_9585#0      GATTAGTGATAATAAAGGTAGTGGATTTTGGTTCCACTTATCTGCTCCTTGTGGTGATGT 837
consensus_9585#1      GATTAGTGATAATAAAGGTAGTGGATTTTGGTTCCACTTATCTGCTCCTTGTGGTGATGT 664
                      ************************************************************

consensus_9585#0      ATTTCTTGATAGTGATTCAGTGCATTGGATCGGTTCTTCATTGCTATGAATTACAGTGAT 897
consensus_9585#1      ATTTCTTGATAGTGATTCAGTGCATTGGATCGGTTCTTCATTGCTATGAAAAAAAAAAAT 724
                      **************************************************  * *   **

consensus_9585#0      GTTTTAGCTTGATTATGTCATGAACTTGATCTGAAACATTTCGGTATCAAATTCTTGATT 957
consensus_9585#1      GTTTTAGCTTGATTATGTCATGAACTTGATCTGAAACATTTCGGTATCAAATTCT----- 779
                      *******************************************************     

consensus_9585#0      GAACCAAAAAAAAAAAAAAAAA 979
consensus_9585#1      ----------------------