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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1247 fasta sequence
[CTGGCTTAGCTTCCCTTCTCACTCGCACGCGCCGCCGCCACAGAGCTCAGCTTAGCTCGAAGCTACTCCGTCTCGAGGTAGCTAGCTAGCTAAGCCTTCATCCATGGCGTCAGGAGAAGCAGAGCCACTGCAGTACACGACCACCGTGCTCCGAGTGTCGATCCACTGCGAGGGTTGCAAGAAGAAGGTCAAGAAGGTGCTCCAGAACATCGAAGGCGTGTACAAGGTGACAATCGACGCGGCGAAGCAGAAGCTCGACGAGGTCGCCGCCGCGCCGCCACCAGCTGCTGCTCCGGCGCCGGCCGGGGAGCGCGGGAAGGGCGCGGAGAAGAAGGCGAAGGAGGCGGCGAAGGAAGCTGGGACTGAGGGCTCGGAGAAGAAGCCGGAGAAGGAGAAGAAAGCCGAGGCGAAGAAGCCGGCCAAGGCCGACGCCGCCAAGAAGGAGGGCGAGGTGCCCGAGAAGGAGAAGGGCTCGCCTGAGCCTAACAAAGAATCGGCCGCCGCCGCCGCCGACGAGGAGGAGGGCGGGGAGGAGTCCGGCGGGAAGAAGGGCAAGAAGAAGAAGAACAAGCAGAAGGACGGCGGCGGCGAGGCGGACGCCGCGGCGCCGGAGAAGCCAGCTGCCAAGGCGCCACCGGCCGCACCCGCGCCGTCGATGCCCGCTCCGGCGCCAACGCTGTCGTCGCCGGAGCGCCCTCACGGCGGGTTCCCGTACTACTCGCCGAAGCCGGTGATGAGCTACAATGTGGCGCACCCGAGCGCGAGCGTGTCCTCGTACTACGCGCCCACGCCGGTAATGTCCATGCAGCCGACGCCCATGCCGCCGCCGCCGCAGATGT-CGTACGGCTACTCGCCGTACCCGCCCATGATGATGCCGCCGCCGCCGCCGCCGGAGTACCTGTACGGCCCGCCGGGCATGCGGTCGTCGCCGCCGCAGGAGTCTTACAGCAACATGTTCAACGAGGAGAACCCGAGCTCGTGTAGCGTCATGTAATGCCGCCGCCGGCGACGATCGCCGGCGCCGGACACGGGACCGATCGAGCTGTAGTTGACGGGGAGGCTTCTCAATAGAAGCCTCTCCTCTCGTGTGGTTGCTAGCTAGAGTGGAGTACTGTTAATTAGATGGTCAAACCTCTTCTTGACCAGACTTTTTTTTCTCTTCCCATTTTAAAATGCTCTTAGTGCATCATGTAATGAGATGAGTATTTTAGTACCCTTAATATCTTCTTTTGTTAAAAAAAAAAAAC]
[+] EMBL AK067933 [CTGGCTTAGCTTCCCTTCTCACTCGCACGCGCCGCCGCCACAGAGCTCAGCTTAGCTCGAAGCTACTCCGTCTCGAGGTAGCTAGCTAGCTAAGCCTTCATCCATGGCGTCAGGAGAAGCAGAGCCACTGCAGTACACGACCACCGTGCTCCGAGTGTCGATCCACTGCGAGGGTTGCAAGAAGAAGGTCAAGAAGGTGCTCCAGAACATCGAAGGCGTGTACAAGGTGACAATCGACGCGGCGAAGCAGAAGCTCGACGAGGTCGCCGCCGCGCCGCCACCAGCTGCTGCTCCGGCGCCGGCCGGGGAGCGCGGGAAGGGCGCGGAGAAGAAGGCGAAGGAGGCGGCGAAGGAAGCTGGGACTGAGGGCTCGGAGAAGAAGCCGGAGAAGGAGAAGAAAGCCGAGGCGAAGAAGCCGGCCAAGGCCGACGCCGCCAAGAAGGAGGGCGAGGTGCCCGAGAAGGAGAAGGGCTCGCCTGAGCCTAACAAAGAATCGGCCGCCGCCGCCGCCGACGAGGAGGAGGGCGGGGAGGAGTCCGGCGGGAAGAAGGGCAAGAAGAAGAAGAACAAGCAGAAGGACGGCGGCGGCGAGGCGGACGCCGCGGCGCCGGAGAAGCCAGCTGCCAAGGCGCCACCGGCCGCACCCGCGCCGTCGATGCCCGCTCCGGCGCCAACGCTGTCGTCGCCGGAGCGCCCTCACGGCGGGTTCCCGTACTACTCGCCGAAGCCGGTGATGAGCTACAATGTGGCGCACCCGAGCGCGAGCGTGTCCTCGTACTACGCGCCCACGCCGGTAATGTCCATGCAGCCGACGCCCATGCCGCCGCCGCCGCAGATGT CGTACGGCTACTCGCCGTACCCGCCCATGATGATGCCGCCGCCGCCGCCGCCGGAGTACCTGTACGGCCCGCCGGGCATGCGGTCGTCGCCGCCGCAGGAGTCTTACAGCAACATGTTCAACGAGGAGAACCCGAGCTCGTGTAGCGTCATGTAATGCCGCCGCCGGCGACGATCGCCGGCGCCGGACACGGGACCGATCGAGCTGTAGTTGACGGGGAGGCTTCTCAATAGAAGCCTCTCCTCTCGTGTGGTTGCTAGCTAGAGTGGAGTACTGTTAATTAGATGGTCAAACCTCTTCTTGACCAGACTTTTTTTTCTCTTCCCATTTTAAAATGCTCTTAGTGCATCATGTAATGAGATGAGTATTTTAGTACCCTTAATATC ]
[+] EMBL AU101545 [ CGGCGGGAAGAAGGGCAAGAAGAAGAAGAACAAGCAGAAGGACGGCGGCGGCGAGGCGGACGCCGCGGCGCCGGAGAAGCCAGCTGCCAAGGCGCCACCGGCCGCACCCGCGCCGTCGATGCCCGCTCCGGCGCCAACGCTGTCGTCGCCGGAGCNCCCTCACGGCGGGTTCCCGTACTACTCGCCGCAGCCGGTGATGAGCTACAATGTGGCGCACCCGAGCGCGAGCNNGTCCTCGTACTACGCGCCCACNCCGGTAATGTCCATGCAGCCGACGCCCATGCCGCCGCCGCCGCAGATGT CGTACGGCTACTCGCCGTACCCGC ]
[+] EMBL AU101546 [ ACGCCGGTAATGTCCATGCAGCCGACGCCNATGCCGCCGCCGCCGCAGATGTCCGTACGGCTACTCGCCGTACCCGCCCATGATGATNCCGCCGCCGCCGCCGCCGGAGTACNTGTACGGCCCGCCGGGCATGCGGTCGTCGCCGCCGCAGGAGTCTTACAGCAACATGTTCAACGAGGAGAACCCGAGCTCGTGTAGCGTCATGTAATGCCGCCGCCGGCGACGATCGCCGGCGCCGGACACGGGACCGATCGAGCTGTAGTTGACGGGGAGGCTTCTCAATAGAAGCCTCTCCTCTCGTGTGGTTGCTAGCTAGAGTGGAGTACTGTTAATTAGATGGTCAAACCTCTTCTTGACCAGACTTTTTTTTCTCTTCCCATTTTAAAATGCTCTTAGTGCATCATGTAATGAGATGAGTATTTTAGTACCCTTAA ]
[+] EMBL CA758577 [ GCCGCCGCAGATGT CGTACGGCTACTCGCCGTACCCGCCCATGATGATGCCGCCGCCG CGCCGCCGGAGTACCTGTACGGCCCG CGGGCATGCGGTCGTCGCTGCCGCAGGAGTCTTACAGCAACATGTTCAACGAGGAGAACCCGAGCTCGTGTAGCGTCATGTAATGCCGCCGCCGGCGACGATCGCCGGCGCCGGACACGGGACCGATCGAGCTGTAGTTGACGGGGAGGCTTCTCAATAGAAGCCTCTCCTCTCGTGTGGTTGCTAGCTAGAGTGGAGTACTGTTAATTAGATGGTCAAACCTCTTCTTGACCAGACTTTTTTTTCTCTTCCCATTNTAAAATGCTCTTAGTGCATCATGTAATGAGATGAGTATTTTAGTACCCTTAATATCTTCTTTTGTTAAAAAAAAAAAAC]
consensusID : consensus_9587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 301 fasta sequence
[GCGCCGCCGCCACAGAGCTCAGCTTAGCTCGAAGCTACTCCGTCTCGAGGTAGCTAGCTAGCTAAGCCTTCATCCATGGCGTCAGGAGAAGCAGAGCCACTGCAGTACACGACCACCGTGCTCCGAGTGTCGATCCACTGCGAGGGTTGCAAGAAGAAGGTCAAGAAGGTGCTCCAGAACATCGAAGGCGTGTACAAGGTGACAATCGACGCGGCGCANACAAGGTGACGGTGACGAGCAGCGTCGGCGCCGACGTGCTCGTCAGGCGGCTGCACAANTNAGGGAAGC-CGCAAGGTGTGNC]
[+] EMBL OSS12806A [GCGCCGCCGCCACAGAGCTCAGCTTAGCTCGAAGCTACTCCGTCTCGAGGTAGCTAGCTAGCTAAGCCTTCATCCATGGCGTCAGGAGAAGCAGAGCCACTGCAGTACACGACCACCGTGCTCCGAGTGTCGATCCACTGCGAGGGTTGCAAGAAGAAGGTCAAGAAGGTGCTCCAGAACATCGAAGGCGTGTACAAGGTGACAATCGACGCGGCGCANACAAGGTGACGGTGACGAGCAGCGTCGGCGCCGACGTGCTCGTCAGGCGGCTGCACAANTNAGGGAAGC ]
[+] EMBL C74759 [ ACAGAGCTCAGCTTAGCTCGAAGCTACNCCGTCTCGAGGTAGCTAGCTAGCTAAGCCTTCATCCATGGCGTCAGGAGAAGCAGAGCCACTGCAGTACACGANCACCGTGCTCCGAGTGTCGATCCACTGCGAGGGTTGCAAGAAGAAGGTCAAGAAGGTGCTCCAGAACATCGAAGGCGTGTACAAGGTGACAATCGACGCGGCGCANACAAGGTGACGGNGACGATCAG GTCGGCGCCGACGTGCTCGTAAGG GGCTG ACAAGTCAGGG AGCACGCAAGGTGTGNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9587#0 CTGGCTTAGCTTCCCTTCTCACTCGCACGCGCCGCCGCCACAGAGCTCAGCTTAGCTCGA 60
consensus_9587#1 ----------------------------GCGCCGCCGCCACAGAGCTCAGCTTAGCTCGA 32
********************************
consensus_9587#0 AGCTACTCCGTCTCGAGGTAGCTAGCTAGCTAAGCCTTCATCCATGGCGTCAGGAGAAGC 120
consensus_9587#1 AGCTACTCCGTCTCGAGGTAGCTAGCTAGCTAAGCCTTCATCCATGGCGTCAGGAGAAGC 92
************************************************************
consensus_9587#0 AGAGCCACTGCAGTACACGACCACCGTGCTCCGAGTGTCGATCCACTGCGAGGGTTGCAA 180
consensus_9587#1 AGAGCCACTGCAGTACACGACCACCGTGCTCCGAGTGTCGATCCACTGCGAGGGTTGCAA 152
************************************************************
consensus_9587#0 GAAGAAGGTCAAGAAGGTGCTCCAGAACATCGAAGGCGTGTACAAGGTGACAATCGACGC 240
consensus_9587#1 GAAGAAGGTCAAGAAGGTGCTCCAGAACATCGAAGGCGTGTACAAGGTGACAATCGACGC 212
************************************************************
consensus_9587#0 GGCGAAGCAGAAGCTCGACGAGGTCGCCGCCGCGCCGCCACCAGCTGCTGCTCCGGCGCC 300
consensus_9587#1 GGCGCANACAAGGT--GACGGTGACGA-GCAGCGTCGGCGCCGACG--TGCTCGTCAGGC 267
**** * * * **** * ** ** *** ** * ** * ***** * *
consensus_9587#0 GGCCGGGGAGCGCGGGAAGGGCGCGGAGAAGAAGGCGAAGGAGGCGGCGAAGGAAGCTGG 360
consensus_9587#1 GGCTGCACAANTNAGGGAAGCCGCAAGGTGTGNC-------------------------- 301
*** * * ** * * *** *
consensus_9587#0 GACTGAGGGCTCGGAGAAGAAGCCGGAGAAGGAGAAGAAAGCCGAGGCGAAGAAGCCGGC 420
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 CAAGGCCGACGCCGCCAAGAAGGAGGGCGAGGTGCCCGAGAAGGAGAAGGGCTCGCCTGA 480
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 GCCTAACAAAGAATCGGCCGCCGCCGCCGCCGACGAGGAGGAGGGCGGGGAGGAGTCCGG 540
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 CGGGAAGAAGGGCAAGAAGAAGAAGAACAAGCAGAAGGACGGCGGCGGCGAGGCGGACGC 600
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 CGCGGCGCCGGAGAAGCCAGCTGCCAAGGCGCCACCGGCCGCACCCGCGCCGTCGATGCC 660
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 CGCTCCGGCGCCAACGCTGTCGTCGCCGGAGCGCCCTCACGGCGGGTTCCCGTACTACTC 720
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 GCCGAAGCCGGTGATGAGCTACAATGTGGCGCACCCGAGCGCGAGCGTGTCCTCGTACTA 780
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 CGCGCCCACGCCGGTAATGTCCATGCAGCCGACGCCCATGCCGCCGCCGCCGCAGATGTC 840
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 GTACGGCTACTCGCCGTACCCGCCCATGATGATGCCGCCGCCGCCGCCGCCGGAGTACCT 900
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 GTACGGCCCGCCGGGCATGCGGTCGTCGCCGCCGCAGGAGTCTTACAGCAACATGTTCAA 960
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 CGAGGAGAACCCGAGCTCGTGTAGCGTCATGTAATGCCGCCGCCGGCGACGATCGCCGGC 1020
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 GCCGGACACGGGACCGATCGAGCTGTAGTTGACGGGGAGGCTTCTCAATAGAAGCCTCTC 1080
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 CTCTCGTGTGGTTGCTAGCTAGAGTGGAGTACTGTTAATTAGATGGTCAAACCTCTTCTT 1140
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 GACCAGACTTTTTTTTCTCTTCCCATTTTAAAATGCTCTTAGTGCATCATGTAATGAGAT 1200
consensus_9587#1 ------------------------------------------------------------
consensus_9587#0 GAGTATTTTAGTACCCTTAATATCTTCTTTTGTTAAAAAAAAAAAAC 1247
consensus_9587#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||