These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2235 fasta sequence [CTAACCCCAGCCAACGCGTCTTCCTGCCCATCCCCGGCGGCGGCGGCGGCGTCAGCGGCGGAGGTCGGCGACTAGTACCAGCGAGGAGGAGGAGAAGAAGGCAACCGGAGATGCCGCTGGGGCAACGCGCGGGGGACAAGAGCGAGTCCCGCTACTGCGGGGTGGAGGTGCTCGACTTCCCCGCCGGCGAGGAGCTCCCCGCCGTCCTCTCCCACTCCCTCTCCTCCTCCTTCGACTTCCTCCTCGCCCCCCTCGTTGATCCCGACTACCGGCCGACGCCCGGGTCCGTCCTCCCCGTGGCGGCGTCGGACCTCGTCCTCGGCCCGGCCCAGTGGAGCAGCCACATCGTCGGGAAGATCAGTGAGTGGATTGATTTGGATGCGGAGGACGAGCAACTCCGGTTGGACTCCGAGATCACTCTGAAGCAGGAGATTGCGTGGGCGTCTCATCTCTCGTTGCAGGCGTGCGTTCTTCCTCCTCCCAAGAGATCTTCTTGTGCCAACTATGCTAGAGTTGTGAATCATATTTTGCAAGGCCTGACCAATTTGCAGTTGTGGCTTAGGATACCTCTGGAGAAGTCTGAACCTATGGATGAAGACCATGATGGAGCAAAAGATAATAGCGACATGAGTGATACCGTAGACTCTTGGGAATGGTGGAATTCATTTAGACTATTATGTGAGCATAGCAGTCAACTGTGTGTGGCGCTTGATGTTTTGAGCACACTGCCATCTATGAATTCACTAGGGCGGTGGTTTGGGGAGCCTGTAAGAGCTGCAATTCTTCAAACAAATGCTTTTCTGACAAATGCCAGAGGTTATCCTTGCCTGTCAAAGCGCCACCAGAAGCTGCTTACTGGATTTTTTAACCATTCGGTTCAGGTTATAATATCTGGGAGATCAAATCATAACGTATCCCAAGGAGGAGTGCTCTCAGGTGATGAAAACCACACTGAAGATACTGCTGTTCGGCATGCATTGAGCCCATACCTTGACTACATTGCTTACATATATCAGAGGATGGACCCACTTCCTGAACAGGAACGCTTTGAGATCAATTATAGGGATTTTCTGCAATCTCCTCTCCAGCCTCTAATGGACAATTTGGAAGCTCAGACATACGAGACTTTTGAGAAAGATACCGTGAAATATACCCAGTATCAAAGAGCAATTGCTAAGGCATTGGTTGATAGAGTTTCCGATGATGATGTCTCAACAACAAAAACAGTGCTGATGGTTGTTGGAGCAGGCCGGGGGCCACTAGTGAGAGCGTCGTTACAGGCTGCTGAGGAAACTGGCCGCAAGCTAAAAGTATACGCCGTCGAGAAAAATCCTAATGCTGTTATCACCCTTCACAGTTTGATCAAATTGGAAGGATGGGAAAGCTTGGTTACTATAATTTCAAGTGACATGCGGTGCTGGGAAGCCCCTGAGAAAGCAGATATTTTGGTCAGTGAGTTGCTTGGTTCCTTTGGTGATAATGAACTTTCTCCCGAGTGTCTAGATGGTGCTCAGAGATTCTTGAAGCCAGATGGGATTTCTATTCCTTCATCATACACTAGCTTTATTGAACCTATAACAGCATCAAAACTACACAACGATATCAAAGCACATAAAGATATTGCACATTTTGAAACTGCATATGTTGTCAAACTACACCGAATAGCAAGACTTGCACCAACACAATCGG-TTTTTACTTTTGA-TCATCCAAATCCCTCACCAAATGCTAGTAACCAAAGGTATACCAAGTTGAAATTTGAGATACCACAAGAGACGGGATCATGCCTCGTGCACGGATTTGCTGGATATTTTGATGCCGTATTGTATAAAGATGTTCATCTTGGAATTGAACCAAACACGGCTACACCAAACATGTTTAGCTGGTTCCCGATCTTCTTCCCA-TTGAGAAAGCCCATCTACGTACCGTCGAAGACGCCTATAGAAGTGCACTTTTGGCGATGCTGCGGTGCAACAAAGGTGTGGTACGAGTGGGCTGTGACGGCACCTTCTCCATCACCAATCCATAACAGCAATGGTCGATCATATTGGGTCGGCCTATAAGTAAAGCCATGAAGCCAGTTTTGTT-TTGTTCCGATTTTCTTTTTAGGGATTCTTTTTGTTGTC-TTTTGAAAGAGAGGAGAGAACAGATTCCATTGTATGG-TTTCTTGTGT-GGAGTGACTCTTTATCAG-AT-ATGCTGCGTGGGAGATTGATTCTTCAGCCTTAAAGCAAGTGATAA] [+] EMBL AK103804 [CTAACCCCAGCCAACGCGTCTTCCTGCCCATCCCCGGCGGCGGCGGCGGCGTCAGCGGCGGAGGTCGGCGACTAGTACCAGCGAGGAGGAGGAGAAGAAGGCAACCGGAGATGCCGCTGGGGCAACGCGCGGGGGACAAGAGCGAGTCCCGCTACTGCGGGGTGGAGGTGCTCGACTTCCCCGCCGGCGAGGAGCTCCCCGCCGTCCTCTCCCACTCCCTCTCCTCCTCCTTCGACTTCCTCCTCGCCCCCCTCGTTGATCCCGACTACCGGCCGACGCCCGGGTCCGTCCTCCCCGTGGCGGCGTCGGACCTCGTCCTCGGCCCGGCCCAGTGGAGCAGCCACATCGTCGGGAAGATCAGTGAGTGGATTGATTTGGATGCGGAGGACGAGCAACTCCGGTTGGACTCCGAGATCACTCTGAAGCAGGAGATTGCGTGGGCGTCTCATCTCTCGTTGCAGGCGTGCGTTCTTCCTCCTCCCAAGAGATCTTCTTGTGCCAACTATGCTAGAGTTGTGAATCATATTTTGCAAGGCCTGACCAATTTGCAGTTGTGGCTTAGGATACCTCTGGAGAAGTCTGAACCTATGGATGAAGACCATGATGGAGCAAAAGATAATAGCGACATGAGTGATACCGTAGACTCTTGGGAATGGTGGAATTCATTTAGACTATTATGTGAGCATAGCAGTCAACTGTGTGTGGCGCTTGATGTTTTGAGCACACTGCCATCTATGAATTCACTAGGGCGGTGGTTTGGGGAGCCTGTAAGAGCTGCAATTCTTCAAACAAATGCTTTTCTGACAAATGCCAGAGGTTATCCTTGCCTGTCAAAGCGCCACCAGAAGCTGCTTACTGGATTTTTTAACCATTCGGTTCAGGTTATAATATCTGGGAGATCAAATCATAACGTATCCCAAGGAGGAGTGCTCTCAGGTGATGAAAACCACACTGAAGATACTGCTGTTCGGCATGCATTGAGCCCATACCTTGACTACATTGCTTACATATATCAGAGGATGGACCCACTTCCTGAACAGGAACGCTTTGAGATCAATTATAGGGATTTTCTGCAATCTCCTCTCCAGCCTCTAATGGACAATTTGGAAGCTCAGACATACGAGACTTTTGAGAAAGATACCGTGAAATATACCCAGTATCAAAGAGCAATTGCTAAGGCATTGGTTGATAGAGTTTCCGATGATGATGTCTCAACAACAAAAACAGTGCTGATGGTTGTTGGAGCAGGCCGGGGGCCACTAGTGAGAGCGTCGTTACAGGCTGCTGAGGAAACTGGCCGCAAGCTAAAAGTATACGCCGTCGAGAAAAATCCTAATGCTGTTATCACCCTTCACAGTTTGATCAAATTGGAAGGATGGGAAAGCTTGGTTACTATAATTTCAAGTGACATGCGGTGCTGGGAAGCCCCTGAGAAAGCAGATATTTTGGTCAGTGAGTTGCTTGGTTCCTTTGGTGATAATGAACTTTCTCCCGAGTGTCTAGATGGTGCTCAGAGATTCTTGAAGCCAGATGGGATTTCTATTCCTTCATCATACACTAGCTTTATTGAACCTATAACAGCATCAAAACTACACAACGATATCAAAGCACATAAAGATATTGCACATTTTGAAACTGCATATGTTGTCAAACTACACCGAATAGCAAGACTTGCACCAACACAATCGG TTTTTACTTTTGA TCATCCAAATCCCTCACCAAATGCTAGTAACCAAAGGTATACCAAGTTGAAATTTGAGATACCACAAGAGACGGGATCATGCCTCGTGCACGGATTTGCTGGATATTTTGATGCCGTATTGTATAAAGATGTTCATCTTGGAATTGAACCAAACACGGCTACACCAAACATGTTTAGCTGGTTCCCGATCTTCTTCCCA TTGAGAAAGCCCATCTACGTACCGTCGAAGACGCCTATAGAAGTGCACTTTTGGCGATGCTGCGGTGCAACAAAGGTGTGGTACGAGTGGGCTGTGACGGCACCTTCTCCATCACCAATCCATAACAGCAATGGTCGATCATATTGGGTCGGCCTATAAGTAAAGCCATGAAGCCAGTTTTGTT TTGTTCCGATTTTCTTTTTAGGGATTCTTTTTGTTGTC TTTTGAAAGAGAGGAGAGAACAGATTCCATTGTATGG TTTCTTGTGT GGAGTGACTCTTTATCAG AT ATGCTGCGTGGGAGATTGATTCTTCAGCCTTAAAGCAAGTGATAA] [+] EMBL AK073412 [ TAACCCCAGCCAACGCGTCTTCCTGCCCATCCCCGGCGGCGGCGGCGGCGTCAGCGGCGGAGGTCGGCGACTAGTACCAGCGAGGAGGAGGAGAAGAAGGCAACCGGAGATGCCGCTGGGGCAACGCGCGGGGGACAAGAGCGAGTCCCGCTACTGCGGGGTGGAGGTGCTCGACTTCCCCGCCGGCGAGGAGCTCCCCGCCGTCCTCTCCCACTCCCTCTCCTCCTCCTTCGACTTCCTCCTCGCCCCCCTCGTTGATCCCGACTACCGGCCGACGCCCGGGTCCGTCCTCCCCGTGGCGGCGTCGGACCTCGTCCTCGGCCCGGCCCAGTGGAGCAGCCACATCGTCGGGAAGATCAGTGAGTGGATTGATTTGGATGCGGAGGACGAGCAACTCCGGTTGGACTCCGAGATCACTCTGAAGCAGGAGATTGCGTGGGCGTCTCATCTCTCGTTGCAGGCGTGCGTTCTTCCTCCTCCCAAGAGATCTTCTTGTGCCAACTATGCTAGAGTTGTGAATCATATTTTGCAAGGCCTGACCAATTTGCAGTTGTGGCTTAGGATACCTCTGGAGAAGTCTGAACCTATGGATGAAGACCATGATGGAGCAAAAGATAATAGCGACATGAGTGATACCGTAGACTCTTGGGAATGGTGGAATTCATTTAGACTATTATGTGAGCATAGCAGTCAACTGTGTGTGGCGCTTGATGTTTTGAGCACACTGCCATCTATGAATTCACTAGGGCGGTGGTTTGGGGAGCCTGTAAGAGCTGCAATTCTTCAAACAAATGCTTTTCTGACAAATGCCAGAGGTTATCCTTGCCTGTCAAAGCGCCACCAGAAGCTGCTTACTGGATTTTTTAACCATTCGGTTCAGGTTATAATATCTGGGAGATCAAATCATAACGTATCCCAAGGAGGAGTGCTCTCAGGTGATGAAAACCACACTGAAGATACTGCTGTTCGGCATGCATTGAGCCCATACCTTGACTACATTGCTTACATATATCAGAGGATGGACCCACTTCCTGAACAGGAACGCTTTGAGATCAATTATAGGGATTTTCTGCAATCTCCTCTCCAGCCTCTAATGGACAATTTGGAAGCTCAGACATACGAGACTTTTGAGAAAGATACCGTGAAATATACCCAGTATCAAAGAGCAATTGCTAAGGCATTGGTTGATAGAGTTTCCGATGATGATGTCTCAACAACAAAAACAGTGCTGATGGTTGTTGGAGCAGGCCGGGGGCCACTAGTGAGAGCGTCGTTACAGGCTGCTGAGGAAACTGGCCGCAAGCTAAAAGTATACGCCGTCGAGAAAAATCCTAATGCTGTTATCACCCTTCACAGTTTGATCAAATTGGAAGGATGGGAAAGCTTGGTTACTATAATTTCAAGTGACATGCGGTGCTGGGAAGCCCCTGAGAAAGCAGATATTTTGGTCAGTGAGTTGCTTGGTTCCTTTGGTGATAATGAACTTTCTCCCGAGTGTCTAGATGGTGCTCAGAGATTCTTGAAGCCAGATGGGATTTCTATTCCTTCATCATACACTAGCTTTATTGAACCTATAACAGCATCAAAACTACACAACGATATCAAAGCACATAAAGATATTGCACATTTTGAAACTGCATATGTTGTCAAACTACACCGAATAGCAAGACTTGCACCAACACAATCGG TTTTTACTTTTGA TCATCCAAATCCCTCACCAAATGCTAGTAACCAAAGGTATACCAAGTTGAAATTTGAGATACCACAAGAGACGGGATCATGCCTCGTGCACGGATTTGCTGGATATTTTGATGCCGTATTGTATAAAGATGTTCATCTTGGAATTGAACCAAACACGGCTACACCAAACATGTTTAGCTGGTTCCCGATCTTCTTCCCA TTGAGAAAGCCCATCTACGTACCGTCGAAGACGCCTATAGAAGTGCACTTTTGGCGATGCTGCGGTGCAACAAAGGTGTGGTACGAGTGGGCTGTGACGGCACCTTCTCCATCACCAATCCATAACAGCAATGGTCGATCATATTGGGTCGGCCTATAAGTAAAGCCATGAAGCCAGTTTTGTT TTGTTCCGATTTTCTTTTTAGGGATTCTTTTTGTTGTC TTTTGAAAGAGAGGAGAGAACAGATTCCATTGTATGG TTTCTTGTGT GGAGTGACTCTTTATCAG AT ATGCTGCGTGGGAGA ] [+] EMBL OSS3957A [ CAGCCAACGCGTCTTCCTGCCCATCCCCGGCGGCGGCGGCGGCGTCA NGGCGGAGGTCGGCGACTAGTACCAGCGAGGAGGAGGAGAAGAAGGCAACCGGAGATGCCGCTGGGGCAACGCGCGGGGGACAAGAGCGAGTCCCGCTACTGCGGGTTGGAGGTGCTCGACTTCCCCGCCGGCGAGGAGCTCCCCGCCGTCCTCTCCCACTCCCTCTCCTCCTCCTTCGACTTCCTCCTCGCCCCCCTCGTTGATCCCGACTACCGGCCGACGNCCGGGTCCGTCCTTCCCGTGGCGGCGTCGGANCTCGTCCTCGGNCCGGCCCAGTGGAGCAGCCACATCGTCGGGAAGATCAGTGAGTTGATTGATTTTGATTCGGAGGACGAGCAANTTCGGTTTGAatt ] [+] EMBL BI813557 [ CAATCGGTTTTTTACTTTTGATTCATCCAAATCCCTCACCAGATGCTAGTAACCAAAGGTATACCAAGTTGAAATTTGAGATACCACAAGAGACGGGATCAT CCTTGTGCACGGATTTGCTGGATATTTTGAT CCGTATTGTATAAAGATGTTCATCTTGGAATTGAACCCAACACGGCTACACC AACATGTTTAGCTGGTTCCCGATCTTCTTCCCACTTGAGAAAGCCCATCTACGTACCGTCGAAGACGCCTATAGAAGTGCACTTTTGGCGATGCTGCGGTGC AC AAGGTGTGGTACGAGTGGGCTGTGACGACACCTTCTCCATCACCAATCCATAACAGC ATGGTCGATCATATTGGGTCGGCCTATAAGTAAAGCCATGAAGCCAGTTTTGTT TTGTTCCGATTTTCTTTTTAGGGATTCTTTTTGTTGTC TTTTGAAAGAGAGGAGAGAACAGATTCCCTTGTATGG TTTCTTGTGT GGAGTGACTCTTTATCAG Aa aaaa ] [-] EMBL CB639251 [ ATCATGCCTCGTGCACGGATTTGCTGGATATTTTGATGCCGTATTGTATAAAGATGTTCATCTTGGAATTGAACCAAACACGGCTACACCAAACATGTTTAGCTGGTTCCCGATCTTCTTCCCA TTGAGAAAGCCCATCTACGTACCGTCGAAGACGCCTATAGAAGTGCACTTTTGGCGATGCTGCGGTGCAACAAAGGTGTGGTACGAGTGGGCTGTGACGGCACCTTCTCCATCACCAATCCATAACAGCAATGGTCGATCATATTGGGTCGGCCTATAAGTAAAGCCATGAAGCCAGTTTTGTT TTGTTCCGATTTTCTTTTTAGGGATTCTTTTTGTTGTC TTTTGAAAGAGAGGAGAGAACAGATTCCATTGTATGGTTTTCTTGTGTGGGAGTGACTTTTTATCAGAATAATGCTGC ] [+] EMBL AU101987 [ AGCCATGAAGCCAGTTTTGTTNTTGTTCCGATTTTCTTTTTAGGGATTCTTTTTGTTGTCNTTTTGAAAGAGAGGAGAGAACAGATTCCATTGTATGG TTTCTTGTGT GGAGTGACTCTTTATCAG AT ATGCTGCGTGGGAGATTGATTCTTCAGCCTTAAAaa ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||