These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence [TCAGCACAAACCAAAATGGCAGCCAGGAGCTCCCTCCATCCTTCCTCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGACCAGTTGAGAGGGATTGTGTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCTCGGAATGCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTATGGAGGTTCAGATCACTGATTTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCGATGTTCTTCAGATCAAGAATGATCAGAAGAGGCAGATCTGAGAAGAACTGATCAATGATCATGTAGTGCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTTCAAGGTATGGAATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATATAGTTTGGCTAATTTTTCAGATTTACAATTCTGTGCTTTTAAAAACAGTACATTGGTTCATGGAGAACTTGTACATTTGTCCTT] [+] EMBL AK062548 [TCAGCACAAACCAAAATGGCAGCCAGGAGCTCCCTCCATCCTTCCTCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGACCAGTTGAGAGGGATTGTGTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCTCGGAATGCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTATGGAGGTTCAGATCACTGATTTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCGATGTTCTTCAGATCAAGAATGATCAGAAGAGGCAGATCTGAGAAGAACTGATCAATGATCATGTAGTGCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTTCAAGGTATGGAATTCAAGTACACTGAAGAGGCA ] [+] EMBL CB000610 [ TCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGACCAGTTGAGAGGGATTGTGTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCTCGGAATGCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTATGGAGGTTCAGATCACTGATTTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCGATGTTCTTCAGATCAAGAATGATCAGAAGAGGCAGATCTGAGAAGAACTGATCAATGATCATGTAGTGCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTTCAAGGTATGGAATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATATAGTTTGGCTAATTTTTCAGATTTACAATTCTGTGCTTTTAAAAACAGTACATTGGTTCATGGAGAACTTGTACATTTGTCCTT] consensusID : consensus_9592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [CCCTCCATCCTTCCTCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCNAGCAACTGGGCTAACAAGAAGGTGGTTTTGGAGGNAAACCAGTTGAAAGAAGGGGAAATTTGTGTGTGTGGCTTTACAAAAAAAAAAAAAGGTGGNTCCNCCCCCCCCCCCCCCCCCCCNCCCCNNTNNNNTTNTNNNNNTGGCCTCGCTNTNTTTTTCTTNTCTTCTTTTCTCTCCTTCCTCTCCCTTCCTTCCCTTNCCGTTCGTCCCTTCCCCTCCGTGGCCGCGCCTGCGTCTCCCGCCCCCCGGCGCGGCCCCTCCGNCTTTGCTGGCCTGTGTGCCGTGGCGGGGGGGGCGGGGCGGTCGTCGGGGGGTTGCGGCGGGGGCGCCCGCCGGCNTTGCCTGCCTGGTGTCGCCGCGGGNCTCTCCTTGCCTCGGTTGGTGGGCGNCGGGGTGCGCGTGGGGGGTGCGGGGGGGTGGGGCGCGTGTTGCGGGTGCGGGGCGGGCGGCCTGGGTGGTGTTTTGTGGCGGGGCGCGGCGGGGCGCCTCG] [+] EMBL CA755904 [CCCTCCATCCTTCCTCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCNAGCAACTGGGCTAACAAGAAGGTGGTTTTGGAGGNAAACCAGTTGAAAGAAGGGGAAATTTGTGTGTGTGGCTTTACAAAAAAAAAAAAAGGTGGNTCCNCCCCCCCCCCCCCCCCCCCNCCCCNNTNNNNTTNTNNNNNTGGCCTCGCTNTNTTTTTCTTNTCTTCTTTTCTCTCCTTCCTCTCCCTTCCTTCCCTTNCCGTTCGTCCCTTCCCCTCCGTGGCCGCGCCTGCGTCTCCCGCCCCCCGGCGCGGCCCCTCCGNCTTTGCTGGCCTGTGTGCCGTGGCGGGGGGGGCGGGGCGGTCGTCGGGGGGTTGCGGCGGGGGCGCCCGCCGGCNTTGCCTGCCTGGTGTCGCCGCGGGNCTCTCCTTGCCTCGGTTGGTGGGCGNCGGGGTGCGCGTGGGGGGTGCGGGGGGGTGGGGCGCGTGTTGCGGGTGCGGGGCGGGCGGCCTGGGTGGTGTTTTGTGGCGGGGCGCGGCGGGGCGCCTCG] consensusID : consensus_9592#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [ATGGCGGCAATGAGCTCTTGCCATCACCTTTCTTCCTCCATTTCCACCCCAAGATTTGGCACAAGGAAGGCAACCATGGCCAAGTTCGTCAGAGCTCCAGTGCACAGCTGCAGCTGCAGCAATGCTCACCTCTCCCAAACTGCAGCACCTGCCAAGATGGTATTTGAAGACCAGGTGAGAGGAGTGGTATGTTACAGAGATGATAAGGGGAATATGATCTGCGAAGGGTACGATGAAGGGCCTAGGCTTGGCATGCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTATGGGGGTTCAAGTCACCGATTTCATCGAGCTGTCGACGCTTCGAGTTTTCGAAGACGTCGATTCTCTGCAGCCCAGGAAAGATCAGAAGGGGAAGCTCTGAAATAAGGTTTCTGAAATTCAGACATACAAGGCCTAAGAATTGCTACATGAATAAGCTGAAACTCTATCCATTTTCATATATACTCATTATCATTTCTTGCTGATAAATGAGTTTTAGTATTGTTCGTCTCAATTATCAACTGGATCCTTCT] [+] EMBL AK062387 [ATGGCGGCAATGAGCTCTTGCCATCACCTTTCTTCCTCCATTTCCACCCCAAGATTTGGCACAAGGAAGGCAACCATGGCCAAGTTCGTCAGAGCTCCAGTGCACAGCTGCAGCTGCAGCAATGCTCACCTCTCCCAAACTGCAGCACCTGCCAAGATGGTATTTGAAGACCAGGTGAGAGGAGTGGTATGTTACAGAGATGATAAGGGGAATATGATCTGCGAAGGGTACGATGAAGGGCCTAGGCTTGGCATGCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTATGGGGGTTCAAGTCACCGATTTCATCGAGCTGTCGACGCTTCGAGTTTTCGAAGACGTCGATTCTCTGCAGCCCAGGAAAGATCAGAAGGGGAAGCTCTGAAATAAGGTTTCTGAAATTCAGACATACAAGGCCTAAGAATTGCTACATGAATAAGCTGAAACTCTATCCATTTTCATATATACTCATTATCATTTCTTGCTGATAAATGAGTTTTAGTATTGTTCGTCTCAATTATCAACTGGATCCTTCT] consensusID : consensus_9592#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [GNTNTGGGTGCTAATGATCATGCTTGCCTTCTGTCCTCTGAAGAACAGGCCTATGGAGGTTCAGATCACTGATTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCGATGTTCTTCAGATCAAGAATGATCAGAAGAGGCAGATCTGAGAAGAACTGATCAATGATCATGTAGTGCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTTCAAGGTATGGAATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATAGTTTGGCTAATTTTTCAGATTTAGAATTCTGTGCTTTTAAAAACAGTAAATTGGTTCATGGAGAACTTGTAAATTTGTCCTTGTGAAGCAATCAAGATTCAGAACAGAAAAAAA] [+] EMBL AU102013 [GNTNTGGGTGCTAATGATCATGCTTGCCTTCTGTCCTCTGAAGAACAGGCCTATGGAGGTTCAGATCACTGATTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCGATGTTCTTCAGATCAAGAATGATCAGAAGAGGCAGATCTGAGAAGAACTGATCAATGATCATGTAGTGCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTTCAAGGTATGGAATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATAGTTTGGCTAATTTTTCAGATTTAGAATTCTGTGCTTTTAAAAACAGTAAATTGGTTCATGGAGAACTTGTAAATTTGTCCTTGTGAAGCAATCAAGATTCAGAACAGAAAAAAA] consensusID : consensus_9592#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [CAGCCAGGAGCTCCCTCCATCCTTCCTCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGACCAGTTGAGAGGGATTGTGTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCTCGGAATGCGGCTGCCGGAGAAGGCCTGCTTTCCCATGGTAATTGCCAACATCTGAATTTACTGAATTTTTTCCTGACATGCTGAAAGGAGAAAGAAGATTAGCATATGTTGCCTGATGAGGATTTTTGTTGTCT] [+] EMBL OSC0681 [CAGCCAGGAGCTCCCTCCATCCTTCCTCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGCACCAGCTCATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGACCAGTTGAGAGGGATTGTGTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCTCGGAATGCGGCTGCCGGAGAAGGCCTGCTTTCCCATGGTAATTGCCAACATCTGAATTTACTGAATTTTTTCCTGACATGCTGAAAGGAGAAAGAAGATTAGCATATGTTGCCTGATGAGGATTTTTGTTGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9592#1 ------------------------------------------------------------ consensus_9592#4 ------------------------------------------------------------ consensus_9592#2 ------------------------------------------------------------ consensus_9592#0 TCAGCACAAACCAAAATGGCAGCCAGGAGCTCCCTCCATCCTTCCTCCATGGCCAGCATC 60 consensus_9592#3 ------------------------------------------------------------ consensus_9592#1 ------------------------------------------------------------ consensus_9592#4 ------------------------------------------------------------ consensus_9592#2 ------------------------------------------------------------ consensus_9592#0 CCAAGATTAATTGGCACCAGGAAGGCAGCCCTAAGGTTCAGAGCTCCTGCCCATGGCGGC 120 consensus_9592#3 ------------------------------------------------------------ consensus_9592#1 ------------------------------------------------------------ consensus_9592#4 ------------------------------------------------------------ consensus_9592#2 ------------------------------------------------------------ consensus_9592#0 ACCAGCTCATCACAGCTTTCCATCGCTGCAGCAACTGCTAACAAGAAGGTGTTTGAGGAC 180 consensus_9592#3 ------------------------------------------------------------ consensus_9592#1 ----------------------------------------------CCCTCCATCCTTCC 14 consensus_9592#4 ----------------------------------CAGCCAGGAGCTCCCTCCATCCTTCC 26 consensus_9592#2 ---------------------------ATGGCGGCAATGAGCTCTTGCCATCACCTTTCT 33 consensus_9592#0 CAGTTGAGAGGGATTGTGTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTAT 240 consensus_9592#3 ---------------------------------------------------GNTNTGGGT 9 consensus_9592#1 TCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCC-----CTAAGGT--T 67 consensus_9592#4 TCCATGGCCAGCATCCCAAGATTAATTGGCACCAGGAAGGCAGCC-----CTAAGGT--T 79 consensus_9592#2 TCCTCCATTTCCACCCCAAGATT---TGGCACAAGGAAGGCAACCATGG-CCAAGTTCGT 89 consensus_9592#0 GATGAAGGTCCAAGGCTCGGAAT--GCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTA 298 consensus_9592#3 GCTAATGATC--ATGCTTGCCTT--CTGTCCTCTGAAGAACA------------GGCCTA 53 * * * * * * * * consensus_9592#1 CAGAGCTCCTGCCCA-TGGCGGCACC-----AGC-TCATCACAGCTTTCCATCGCTGCNA 120 consensus_9592#4 CAGAGCTCCTGCCCA-TGGCGGCACC-----AGC-TCATCACAGCTTTCCATCGCTGCA- 131 consensus_9592#2 CAGAGCTCCAGTGCA-CAGCTGCAGCTG--CAGC-AATGCTCACCTCTCCCAAACTGCA- 144 consensus_9592#0 TGGAGGTTCAGATCACTGATTTCATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCG 358 consensus_9592#3 TGGAGGTTCAGATCACTGATT-CATTGAGCTGGCGACGTTCCGGGTCTTCGAAGATGCCG 112 *** * * * ** ** ** * * * * *** consensus_9592#1 GCAACTGGGCTAACAAGAAGGTGGTTTTGGAGGNAAACCAGTTGAAAGAAGGGGAAATTT 180 consensus_9592#4 GCAACTG--CTAACAAGAAGGTGTTT------GAGGACCAGTTGAGAG-----GGATTGT 178 consensus_9592#2 GCACCTG-----CCAAGATGGTATTT------GAAGACCAGGTGAGAG-----GAGTGGT 188 consensus_9592#0 ATGTTCTTCAGATCAAGAA--TGATC----AGAAGAGGCAGATCTGAGAAGAACTGATCA 412 consensus_9592#3 ATGTTCTTCAGATCAAGAA--TGATC----AGAAGAGGCAGATCTGAGAAGAACTGATCA 166 ***** * * *** * ** consensus_9592#1 GTGTGTGTGGCTTTACAAAAAAAAAAAAAGGTGGNTCCNCCCCCCCCCCCCCCCCCCCNC 240 consensus_9592#4 GTGCTACAGAGATGACAAGGGAGAGATGGTCTGTGAAGGGTATGATGAAGGTCCAAGGCT 238 consensus_9592#2 ATGTTACAGAGATGATAAGGGGAATATGATCTGCGAAGGGTACGATGAAGGGCCTAGGCT 248 consensus_9592#0 ATGATCATGTAGT-GCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTT 471 consensus_9592#3 ATGATCATGTAGT-GCAAGGCAGTAGTTGTATAGAAATGCTCATGTGTAAGAATAATTTT 225 ** * * ** * consensus_9592#1 CCCNNTNNNNTTNTNNNNNTGGCCTCGCTNTNTTTTTCTTNTCTTCTTTTCTCTCCTTCC 300 consensus_9592#4 CGGAATGCGGCTGCCGGAGAAGGCCTGCTTTCCCATGGTAAT-TGCCAACATCTGAATTT 297 consensus_9592#2 TGGCATGCGGCTGCCGGAGAAGGCCTGCTTCCCATGGCCTATGGGGGTTCAAGTCACCGA 308 consensus_9592#0 CAAGGTATGGA-ATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTCTC 530 consensus_9592#3 CAAGGTATGGA-ATTCAAGTACACTGAAGAGGCAGTTCTGATGTAGTTCTGTACCCTCTC 284 * * * consensus_9592#1 TCTCCCTTCCTTCCCTTNCCGTTCGTCCCTTCCCCTCCGTGGCCGCGCCTGCGTCTCCCG 360 consensus_9592#4 ACTGAATTTTTTCCTGACATGCTGAAAGGA--------GAAAGAAGATTAGCATATGTTG 349 consensus_9592#2 TTTCATCGAGCTGTCGACGCTTCGAGTTTT-------CGAAGACGTCGATTC-TCTGCAG 360 consensus_9592#0 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATA-TATATATATATATATATATATAT 589 consensus_9592#3 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATAT------------------------- 319 * consensus_9592#1 CCCCCCGGCGCGGCCCCTCCGNCTTTGCTGGCCTGTGTGCCGTGGCGGGGGGGGCGGGGC 420 consensus_9592#4 CCT---GATGAGGATTTTTGTTGTCT---------------------------------- 372 consensus_9592#2 CCC---AGGAAAGATCAGAAGGGGAAGCTCTGAAATAAGGTTTCTGAAATTCAGACATAC 417 consensus_9592#0 ATATATATATATATATATATAGTTTGGCTAATTTTTCAGATTTA--CAATTCTGTGCTTT 647 consensus_9592#3 ----------------ATATAGTTTGGCTAATTTTTCAGATTTA--GAATTCTGTGCTTT 361 consensus_9592#1 GGTCGTCGGGGGGTTGCGGCGGGGGCGCCCGCCGGCNTTGCCTGCCTGGTGTCGCCGCGG 480 consensus_9592#4 ------------------------------------------------------------ consensus_9592#2 AAG-GCCTAAGAATTGCTACATGAATAAGCTGAAACTCTATCCATTTTCATATATACTCA 476 consensus_9592#0 TAAAAACAGTACATTGGTTCATGGAGAACTTGTACATTTGTCCTT--------------- 692 consensus_9592#3 TAAAAACAGTAAATTGGTTCATGGAGAACTTGTAAATTTGTCCTTGTGAAGCAATCAAGA 421 consensus_9592#1 GNCTCTCCTTGCCTCGGTTGGTGGGCGNCGGGGTGCGCGTGGGGGGTGCGGGGGGGTGGG 540 consensus_9592#4 ------------------------------------------------------------ consensus_9592#2 TTATCATTTCTTGCTGATAAATGAGTTTTAGTAT---TGTTCGTCTCAATTATCAACTGG 533 consensus_9592#0 ------------------------------------------------------------ consensus_9592#3 TTCAGAACAGAAAAAAA------------------------------------------- 438 consensus_9592#1 GCGCGTGTTGCGGGTGCGGGGCGGGCGGCCTGGGTGGTGTTTTGTGGCGGGGCGCGGCGG 600 consensus_9592#4 ------------------------------------------------------------ consensus_9592#2 ATCCTTCT---------------------------------------------------- 541 consensus_9592#0 ------------------------------------------------------------ consensus_9592#3 ------------------------------------------------------------ consensus_9592#1 GGCGCCTCG 609 consensus_9592#4 --------- consensus_9592#2 --------- consensus_9592#0 --------- consensus_9592#3 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||