These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9595#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1828 fasta sequence [GCGTNCNTTCCCTCCACTCGAGCGGNCTGAGCTTAGCTTAGCTCCCCACTCACTCGCCACTTNCTGCAATTGCAATGGCTGCTGCTGCTGCTCGATGCGCCGGCCATGGCGGCGGCGGCGGCGGCGGCNNTTTNTTACTCCGNCGACGGCTGCTCGCCACCGCGGCGTTCCTGGCGGCGTTTGGGCTCTGCACTGCTGCTGCTGATGACGCTGCCACGGGGAGAGGACAAGGGCATGATCATGTGATGCTGAGCGTGGAGGACATGTTCCCTGACTCGTCGTCGTCGTCGCCGTCGTGCGACGCGCCGCCGCGAGATCACAGACATGACGCCACGTCATCAACCACTAGGATGACGATCGTCCACCGGCACGGCCCGTGCTCGCCGCTAGCCGCCGCGCACGGCGAGCCGCCGTCCCACGGCGAGATCCTCGCCGCCGACCAGAGCCGCGCCGAGTCGATCCAACACCGGGTGTCCACCACCACCACCGGCCGGGTGAATCCAAAGCGCAGACGCCACCGGCAGCAGCAGCCGCCGTCGGCGCCGGCGCCGGCGGCGTCGCTGTCGTCGTCCACCGCGTCGCTCCCGGCGTCGCCGGGGCGCGCGCTGGGCACAGGCAACTACGTGGTGACCGTGGGCCTCGGCACGCCGGCGTCGCGGTACACGGTGGTGTTCGACACCGGCAGCGACACGACGTGGGTGCAGTGCCAGCCGTGCGTGGTGGCGTGCTACGAGCAGCGGGAGAAGCTGTTCGACCCGGCGAGCTCGTCCACCTACGCCAACGTCTCCTGCGCCGCGCCGGCCTGCTCCGACCTCGACGTCAGCGGCTGCTCCGGCGGCCACTGCCTCTACGGCGTCCAGTACGGCGACGGCTCGTACTCCATTGGCTTCTTCGCCATGGACACCCTCACCCTCTCCTCCTACGACGCCGTCAAGGGGTTCCGGTTCGGCTGCGGCGAGAGGAACGACGGCTTGTTCGGCGAGGCGGCGGGGCTCCTCGGCCTCGGCCGCGGCAAGACGTCGCTGCCGGTGCAGACGTACGGCAAGTACGGCGGCGTGTTCGCGCACTGCCTCCCGGCGAGGTCGACCGGCACGGGGTACCTCGACTTCGGCGCGGGCTCGCCGCCGGCGACGACGACGACGCCGATGCTGACGGGCAACGGGCCGACGTTCTACTACGTCGGCATGACGGGCATCCGCGTCGGCGGGCGGCTGCTGCCCATCGCGCCGTCGGTGTTCGCCGCCGCCGGCACGATCGTCGACTCCGGCACGGTGATCACGCGCCTCCCGCCGGCGGCGTACTCGTCGCTCCGCTCCGCGTTCGCCGCCGCCATGGCGGCGCGCGGGTACAGGAAGGCGGCGGCGGTGTCGCTGCTGGACACGTGCTACGACTTCACCGGGATGAGCCAGGCGGCGATCCCGACGGTGTCGCTGCTGTTCCAGGGCGGCGCGGCGCTGGACGTCGACGCGTCGGGGATCATGTACACGGTGAGCGCGTCGCAGGTGTGCCTCGCGTTCGCCGGCAACGAGGACGGCGGCGACGTCGGCATCG-TCGGGAAC-ACGCAG-CTC--AAG-ACGTTCGGCGT-CGCCTACGA-CATCGGGAAGAAGGTGGTCGGCTTCTCCCCCGGAGCTTGCTGATGAAAT-GTGCCACGCGTCACCCCCAGCAAACGTACACGTCAGCACGCAGAATGAATTAACTGTCTGCACTCTGCAGTGTAATGCTGCAATCCACCAGGTGGTCAGCGACTGGTTTTATTACCATGATTTCTGAAGATATATAATCATATGATTACAAATATGCTAATATTATTTTCTCTTCTTACATTTAAAAA] [+] EMBL OSS10548A [GCGTNCNTTCCCTCCACTCGAGCGGNCTGAGCTTAGCTTAGCTCCCCACTCACTCGCCACTTNCTGCAATTGCAATGGCTGCTGCTGCTGCTCGATGCGCCGGCCATGGCGGCGGCGGCGGCGGCGGCNNTTTNTTACTCCGNCGA ] [+] EMBL AK066754 [ CCTCCACTCGCGCGGGCTGAGCTTAGCTTAGCTCCCCACTCACTCGCCACTTGCTGCAATTGCAATGGCTGCTGCTGCTGCTCGATGCGCCGGCCATGGCGGCGGCGGCGGCGGCGGCGGTTTCTTACTCCGGCGACGGCTGCTCGCCACCGCGGCGTTCCTGGCGGCGTTTGGGCTCTGCACTGCTGCTGCTGATGACGCTGCCACGGGGAGAGGACAAGGGCATGATCATGTGATGCTGAGCGTGGAGGACATGTTCCCTGACTCGTCGTCGTCGTCGCCGTCGTGCGACGCGCCGCCGCGAGATCACAGACATGACGCCACGTCATCAACCACTAGGATGACGATCGTCCACCGGCACGGCCCGTGCTCGCCGCTAGCCGCCGCGCACGGCGAGCCGCCGTCCCACGGCGAGATCCTCGCCGCCGACCAGAGCCGCGCCGAGTCGATCCAACACCGGGTGTCCACCACCACCACCGGCCGGGTGAATCCAAAGCGCAGACGCCACCGGCAGCAGCAGCCGCCGTCGGCGCCGGCGCCGGCGGCGTCGCTGTCGTCGTCCACCGCGTCGCTCCCGGCGTCGCCGGGGCGCGCGCTGGGCACAGGCAACTACGTGGTGACCGTGGGCCTCGGCACGCCGGCGTCGCGGTACACGGTGGTGTTCGACACCGGCAGCGACACGACGTGGGTGCAGTGCCAGCCGTGCGTGGTGGCGTGCTACGAGCAGCGGGAGAAGCTGTTCGACCCGGCGAGCTCGTCCACCTACGCCAACGTCTCCTGCGCCGCGCCGGCCTGCTCCGACCTCGACGTCAGCGGCTGCTCCGGCGGCCACTGCCTCTACGGCGTCCAGTACGGCGACGGCTCGTACTCCATTGGCTTCTTCGCCATGGACACCCTCACCCTCTCCTCCTACGACGCCGTCAAGGGGTTCCGGTTCGGCTGCGGCGAGAGGAACGACGGCTTGTTCGGCGAGGCGGCGGGGCTCCTCGGCCTCGGCCGCGGCAAGACGTCGCTGCCGGTGCAGACGTACGGCAAGTACGGCGGCGTGTTCGCGCACTGCCTCCCGGCGAGGTCGACCGGCACGGGGTACCTCGACTTCGGCGCGGGCTCGCCGCCGGCGACGACGACGACGCCGATGCTGACGGGCAACGGGCCGACGTTCTACTACGTCGGCATGACGGGCATCCGCGTCGGCGGGCGGCTGCTGCCCATCGCGCCGTCGGTGTTCGCCGCCGCCGGCACGATCGTCGACTCCGGCACGGTGATCACGCGCCTCCCGCCGGCGGCGTACTCGTCGCTCCGCTCCGCGTTCGCCGCCGCCATGGCGGCGCGCGGGTACAGGAAGGCGGCGGCGGTGTCGCTGCTGGACACGTGCTACGACTTCACCGGGATGAGCCAGGCGGCGATCCCGACGGTGTCGCTGCTGTTCCAGGGCGGCGCGGCGCTGGACGTCGACGCGTCGGGGATCATGTACACGGTGAGCGCGTCGCAGGTGTGCCTCGCGTTCGCCGGCAACGAGGACGGCGGCGACGTCGGCATCG TCGGGAAC ACGCAG CTC AAG ACGTTCGGCGT CGCCTACGA CATCGGGAAGAAGGTGGTCGGCTTCTCCCCCGGAGCTTGCTGATGAAAT GTGCCACGCGTCACCCCCAGCAAACGTACACGTCAGCACGCAGAATGAATTAACTGTCTGCACTCTGCAGTGTAATGCTGCAATCCACCAGGTGGTCAGCGACTGGTTTTATTACCATGATTTCTGAAGATATATAATCATATGATTA ] [+] EMBL AU161608 [ CATCGTTCGGGGACNACGCAGTCTCCAAAGAACGTTCGGCGTCCGCCTACGACCATCGGGAAGAAGGTGGTCGGCTTCTCCCCCGGAGCTTGCTGATGAAATCGTGCCACGCGTCACCCCCAGCAAACGTACACGTCAGCACGCAGAATGAATTAACTGTCTGCACTCTGCAGTGTAATGCTGCAATCCACCAGGTGGTCAGCGACTGGTTTTATTACCATGATTTCTGAAGATATATAATCATATGATTACAAATATGCTAATATTATTTTCTCTTCTTACATTTAAAAA] [+] EMBL BM419192 [ ccgTAACTGTCTGCACTCTGCAGTGTAATGCTGCAATCCACCAGGTGGTCAGCGACTGGTTTTATTACCATGATTTCTGAAGATACATCATCATATGATTACAAATATGCTAAaaaa ] consensusID : consensus_9595#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CTCCACTCGCGCGGGCTGAGCTTAGCTTAGCTCCCCACTCACTCGCCACTTGCTGCAATTGCAATGGCTGCTGCTGCTGCTCGATGCGCCGGCCATGGCGGCGGCGGCGGCGGCGGCGGTTTCTTACTCCGGCGACGGCTGCTCGCCACCGCGGCGTTCCTGGCGGCGTTTGGGCTCTGCACTGCTGCTGCTGATGACGCTGCCACGGGGAGAGGACAAGGGCATGATCATGTGATGCTGAGCGTGGAGGACATGTTCCCTGACTCGTCGTCGTCGTCGCCGTCGTGCGACGCGCCGCCGCGAGGTTTGATTCGTTTTGCTCGCCATGGCATGGCATGGCCACTTCTTGATCGAGCTCTTTCCAAGTCTCTGTCTGTCATGTCAGAATCTCAGTGTGAGTGTGAGGTGTGTCTGCTGCTGTTGCATTTGCATATATCATGCATTCATTCATGCATGGATAGATGCTTCAGATTGCTCTCTGCATCAGTGCTTCTTTTTCTTTTTCTTTTCTTGGTTTGGTTTGGTTTGGTTAATTTGTTTGCTTATTCAATTGATCTATCACCCGTTTGTTTCTGGACTTCAGGTTTCTCTGGTTTCAGAGCTG] [+] EMBL AK062719 [CTCCACTCGCGCGGGCTGAGCTTAGCTTAGCTCCCCACTCACTCGCCACTTGCTGCAATTGCAATGGCTGCTGCTGCTGCTCGATGCGCCGGCCATGGCGGCGGCGGCGGCGGCGGCGGTTTCTTACTCCGGCGACGGCTGCTCGCCACCGCGGCGTTCCTGGCGGCGTTTGGGCTCTGCACTGCTGCTGCTGATGACGCTGCCACGGGGAGAGGACAAGGGCATGATCATGTGATGCTGAGCGTGGAGGACATGTTCCCTGACTCGTCGTCGTCGTCGCCGTCGTGCGACGCGCCGCCGCGAGGTTTGATTCGTTTTGCTCGCCATGGCATGGCATGGCCACTTCTTGATCGAGCTCTTTCCAAGTCTCTGTCTGTCATGTCAGAATCTCAGTGTGAGTGTGAGGTGTGTCTGCTGCTGTTGCATTTGCATATATCATGCATTCATTCATGCATGGATAGATGCTTCAGATTGCTCTCTGCATCAGTGCTTCTTTTTCTTTTTCTTTTCTTGGTTTGGTTTGGTTTGGTTAATTTGTTTGCTTATTCAATTGATCTATCACCCGTTTGTTTCTGGACTTCAGGTTTCTCTGGTTTCAGAGCTG] consensusID : consensus_9595#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [GTGATAGAAAAAATTCTGAATTTCATTTTCTGAAATAATTCCGATTGATCCAAGCTGAACATCTCCCTGGAAATTCAGATCACAGACATGACGCCACGTCATCAACCACTAGGATGACGATCGTCCACCGGCACGGCCCGTGCTCGCCGCTAGCCGCCGCGCACGGGAGCCGCCGTCCCACGGGAGATCCTCGCGCCGACCAGAGCCGCGCCGAGTCGATCCAACACCGGGTGTCCACCACCACCACCGGCCGGGTGAATCCAAAGCGCAG] [+] EMBL OSS1231A [GTGATAGAAAAAATTCTGAATTTCATTTTCTGAAATAATTCCGATTGATCCAAGCTGAACATCTCCCTGGAAATTCAGATCACAGACATGACGCCACGTCATCAACCACTAGGATGACGATCGTCCACCGGCACGGCCCGTGCTCGCCGCTAGCCGCCGCGCACGGGAGCCGCCGTCCCACGGGAGATCCTCGCGCCGACCAGAGCCGCGCCGAGTCGATCCAACACCGGGTGTCCACCACCACCACCGGCCGGGTGAATCCAAAGCGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9595#0 GCGTNCNTTCCCTCCACTCGAGCGGNCTGAGCTTAGCTTAGCTCCCCACTCACTCGCCAC 60 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 TTNCTGCAATTGCAATGGCTGCTGCTGCTGCTCGATGCGCCGGCCATGGCGGCGGCGGCG 120 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 GCGGCGGCNNTTTNTTACTCCGNCGACGGCTGCTCGCCACCGCGGCGTTCCTGGCGGCGT 180 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 --CTCCACTCGCGCGGGCTGAGCTTAGCTTAGCTCCCCACTCACTCGCCACTTGCTGCAA 58 consensus_9595#0 TTGGGCTCTGCACTGCTGCTGCTGATGACGCTGCCACGGGGAGAGGACAAGGGCATGATC 240 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 TTGCAATGGCTGCTGCTGCTGCTCGATGCGCCGGCCATGGCGGCGGCGGCGGCGGCGGCG 118 consensus_9595#0 ATGTGATGCTGAGCGTGGAGGACAT-GTTCCCTGACTCGTCGTCG--TC-GTCGCCGTCG 296 consensus_9595#2 --GTGATAGAAAAAATTCTGAATTTCATTTTCTGAAATAATTCCGATTG-ATCCAAGCTG 57 consensus_9595#1 GTTTCTTACTCCGGCGACGGCTGCTCGC-CACCGCGGCGTTCCTGGCGGCGTTTGGGCTC 177 * * * * * * * * * consensus_9595#0 TGCGACGCG-CCG--CCG--CGAGATCACAGACATGACGCCACGTCATCAACCACTAGGA 351 consensus_9595#2 AACATCTCC-CTG--GAAATTCAGATCACAGACATGACGCCACGTCATCAACCACTAGGA 114 consensus_9595#1 TGCACTGCTGCTGCTGATGACGCTGCCACGGGGAGAGGACAAGGGCAT-GATCA-TGTGA 235 * * * * *** * * * * * *** * ** * ** consensus_9595#0 TGACGATCGTCCACCGGCACGGCCCGTG-CTCGCCGCTAGCCGCCGCGCACG-GCGAGCC 409 consensus_9595#2 TGACGATCGTCCACCGGCACGGCCCGTG-CTCGCCGCTAGCCGCCGCGCACG-G-GAGCC 171 consensus_9595#1 TGCTGAGCGTGGAG-GACATGTTCCCTGACTCGTCG-TCGTCGTCGCCGTCGTGCGACGC 293 ** ** *** * * ** * ** ** **** ** * * ** *** ** * ** * consensus_9595#0 GCCGTCCCACGGCGAGATCCTCGCCGCCGACCAGAGCCGCGCCGAGTCGATCCAACACCG 469 consensus_9595#2 GCCGTCCCACGG-GAGATCCTCGC-GCCGACCAGAGCCGCGCCGAGTCGATCCAACACCG 229 consensus_9595#1 GCCGCCGCGAGGTTTGATTCGTTTTGCTCGCCATGGCATGGCATGGCCACTTCTTGATCG 353 **** * * ** *** * ** *** ** ** * * * * * ** consensus_9595#0 GGTGTCCACCA--CCACCACCGGCCGGGTGA-ATCCAAAGCGCAGACGCCACCGGCAGCA 526 consensus_9595#2 GGTGTCCACCA--CCACCACCGGCCGGGTGA-ATCCAAAGCGCAG--------------- 271 consensus_9595#1 AGCTCTTTCCAAGTCTCTGTCTGTCATGTCAGAATCTCAGTGTGAGTGTGAGGTGTGTCT 413 * *** * * * * * ** * * * ** * consensus_9595#0 GCAGCCGCCGTCGGCGCCGGCGCCGGCGGCGTCGCTGTCGTCGTCCACCGCGTCGCTCCC 586 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 GCTGCTGTTGCATTTGCATATATCATGCATTCATTCATGCATGGATAGATGCTTCAGATT 473 consensus_9595#0 GGCGTCGCCGGGGCGCGCGCTGGGCACAGGCAACTACGTGGTGACCGTGGGCCTCGGCAC 646 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 GCTCTCTGCATCAGTGCTTCTTTTTCTTTTTCTTTTCTTGGTTTGGTTTGGTTTGGTTAA 533 consensus_9595#0 GCCGGCGTCGCGGTACACGGTGGTGTTCGACACCGGCAGCGACACGACGTGGGTGCAGTG 706 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 TTTGTTTGCTTATTCAATTGATCTATCACCCGTTTGTTTCTGGACTTCAGGTTTCTCTGG 593 consensus_9595#0 CCAGCCGTGCGTGGTGGCGTGCTACGAGCAGCGGGAGAAGCTGTTCGACCCGGCGAGCTC 766 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 TTTCAGAGCTG------------------------------------------------- 604 consensus_9595#0 GTCCACCTACGCCAACGTCTCCTGCGCCGCGCCGGCCTGCTCCGACCTCGACGTCAGCGG 826 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 CTGCTCCGGCGGCCACTGCCTCTACGGCGTCCAGTACGGCGACGGCTCGTACTCCATTGG 886 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 CTTCTTCGCCATGGACACCCTCACCCTCTCCTCCTACGACGCCGTCAAGGGGTTCCGGTT 946 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 CGGCTGCGGCGAGAGGAACGACGGCTTGTTCGGCGAGGCGGCGGGGCTCCTCGGCCTCGG 1006 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 CCGCGGCAAGACGTCGCTGCCGGTGCAGACGTACGGCAAGTACGGCGGCGTGTTCGCGCA 1066 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 CTGCCTCCCGGCGAGGTCGACCGGCACGGGGTACCTCGACTTCGGCGCGGGCTCGCCGCC 1126 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 GGCGACGACGACGACGCCGATGCTGACGGGCAACGGGCCGACGTTCTACTACGTCGGCAT 1186 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 GACGGGCATCCGCGTCGGCGGGCGGCTGCTGCCCATCGCGCCGTCGGTGTTCGCCGCCGC 1246 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 CGGCACGATCGTCGACTCCGGCACGGTGATCACGCGCCTCCCGCCGGCGGCGTACTCGTC 1306 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 GCTCCGCTCCGCGTTCGCCGCCGCCATGGCGGCGCGCGGGTACAGGAAGGCGGCGGCGGT 1366 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 GTCGCTGCTGGACACGTGCTACGACTTCACCGGGATGAGCCAGGCGGCGATCCCGACGGT 1426 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 GTCGCTGCTGTTCCAGGGCGGCGCGGCGCTGGACGTCGACGCGTCGGGGATCATGTACAC 1486 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 GGTGAGCGCGTCGCAGGTGTGCCTCGCGTTCGCCGGCAACGAGGACGGCGGCGACGTCGG 1546 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 CATCGTCGGGAACACGCAGCTCAAGACGTTCGGCGTCGCCTACGACATCGGGAAGAAGGT 1606 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 GGTCGGCTTCTCCCCCGGAGCTTGCTGATGAAATGTGCCACGCGTCACCCCCAGCAAACG 1666 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 TACACGTCAGCACGCAGAATGAATTAACTGTCTGCACTCTGCAGTGTAATGCTGCAATCC 1726 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 ACCAGGTGGTCAGCGACTGGTTTTATTACCATGATTTCTGAAGATATATAATCATATGAT 1786 consensus_9595#2 ------------------------------------------------------------ consensus_9595#1 ------------------------------------------------------------ consensus_9595#0 TACAAATATGCTAATATTATTTTCTCTTCTTACATTTAAAAA 1828 consensus_9595#2 ------------------------------------------ consensus_9595#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||