These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 867 fasta sequence [AAGCAAAGCAAGCGAGCGCCGCCCTCACTCCTCTCACACACTGCACCACACGC-CTAACCAACCACGCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGCGGCTTCTTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCTCGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGG-GGATGACGACCTCCTGGCGGCGGCGCGCGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGAGCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCT-ACCAGTGGCCCG-TCGCGCGCACCGGCG-TCGTCGCCACGATCGCCGGCGGCGGC-GGCGGCGATGGCCCCGTCGTCGCGCTCC-GGGCGGACATGGACGCGCTCCCCGTGCAGGAATTGGTAGATTGGGAACACAAGAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTATGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCCGGCTCTTCCGGTGGGCGTGGTTGCAGCCAGGCCTGGGCCATTCGCCGCAACGTCAGGCAGGTTCTTGGCAACTATCACTGGAAAGGGTGGCCATGCTGCA-TCCCCCATGACGCCATTGATCCTGTTGTCGCTGCATCCAATGCCATC] [+] EMBL AU162711 [AAGCAAAGCAAGCGAGCGCCGCCCTCACTCCTCTCACACACTGCACCACACGC CTAACCAACCACGCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGC GCTTCTTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCTCGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGG GGATGACGACCTCCTGGCGGCGGCGCGCGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACNCCGAGCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGGGTCCCCTAACCAGTGGCCCGTTCGCGCGCANCGGCGTTCGTCGCCAAGAATGACGGCGGGGGCGGGNGGCGATGGGCNCGTCGTCGNGTTCCGGGGGGGAAATGGAa ] [+] EMBL CB650409 [ AGCGCCTTTCTAAGTCCTCTCACACACTGCACCACACGCTCTAACCAACCACGCGAACGAAGCGCGCGCGCGCTGACGTCCTCCTCCTCCGCCGCCATGGCGGCTTCTTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCTCGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGG GGATGACGACCTCCTGGCGGCGGCGCGCGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGAGCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCT ACCAGTGGCCCG TCGCGCGCACCGGCG TCGTCGCCACGATCGCCGGCGGCGGC GGCGGCGATGGCCCCGTCGTCGCGCTCC GGGCGGACATGGACGCGCTCCCCGTGCAGGAATTGGTAGATTGGGAACACAAGAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTATGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCCGGCTCTTCCGGTGGGCGTGGTTGCAGCCAGGCCTGGGCCATTCGCCGCAACGTCAGGCAGGTTCTTGGCAACTATCACTGGAAAGGGTGGCCATGCTGCA TCCCCCATGACGCCATTGATCCTGTTGTCGCTGCATC ] [+] EMBL CB640261 [ CACTGCACCACACGC CTAACCAACCACGCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGCGGCTTCTTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCTCGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGG GGATGACAACCTCCTGGCGGCGGCGCGCGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGAGCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCT ACCAGTGGCCCG TCGCGCGCACCGGCG TCGTCGCCACGATCGCCGGCGGCGGC GGCGGCGATGGCCCCGTCGTCGCGCTCC GGGCGGACATGGACGCGCTCCCCGTGCAGGAATTGGTAGATTGGGAACACAAGAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTA ] [+] EMBL CB639295 [ ACTGCACCACACGC CTAACCAACCACGCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGCGGCTTCTTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCTCGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGGTGTATTACGACCTCCTGGCGGCGGCGCGCGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGAGCTGGCGTTCGAGGAGGTCCGCACCATCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCT ACCAGTGGCCCG TCGCGCGCACCGGCG TCGTCGCCACGATCGCCGGCGGCGGC GGCGGCGATGGCCCCGTCGTCCCGCTCC GGGCGGACATGGACGCGCTCCCCGTGCAGGAATTGGTAG ] [+] EMBL CB654671 [ GCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGCGGCTTCTTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCTCGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGG GGATGACGACCTCCTGGCGGCGGCGCGCGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGAGCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCT ACCAGTGGCCCG TCGCGCGCACCGGCG TCGTCGCCACGATCGCCGGCGGCGGC GGCGGCGATGGCCCCGTCGTCGCGCTCC GGGCGGACATGGACGCGCTCCCCGTGCAGGAATTGGTAGATTGGGAACACAAGAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTATGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCCGGCTCTTCCGGTGGGCGTGGTTGCAGCCAGGCCTGGGCCATTCGCCGCAACGTCAGGCAGGTTCTTGGCAACTATCACTGGAAAGGGTGGCCATGCTGCATTCCCCCATGACGCCATTGATCCTGTTGTCGCTGCATCCAATGCCATC] consensusID : consensus_9598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [AGGAGGTACTCCATGGCATACCGCGGCACCCCGAGCTGGCGTTCGAGGAAGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCTACCAGTGGCCCGTCGCGCGCACCGGCGTCCTCGCCACGATCGCCGGCGGCGGCGGCGGCGATGGCCCCGTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCCGTGCAAGAATTGGTAGATTGGGAACACAATAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTATGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCCGGCTCTTCCGGTGGGCGTGGTTGCAGCCAG] [+] EMBL CB650410 [AGGAGGTACTCCATGGCATACCGCGGCACCCCGAGCTGGCGTTCGAGGAAGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCTACCAGTGGCCCGTCGCGCGCACCGGCGTCCTCGCCACGATCGCCGGCGGCGGCGGCGGCGATGGCCCCGTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCCGTGCAAGAATTGGTAGATTGGGAACACAATAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTATGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCCGGCTCTTCCGGTGGGCGTGGTTGCAGCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9598#0 AAGCAAAGCAAGCGAGCGCCGCCCTCACTCCTCTCACACACTGCACCACACGCCTAACCA 60 consensus_9598#1 ------------------------------------------------------------ consensus_9598#0 ACCACGCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGCGGCTTC 120 consensus_9598#1 ------------------------------------------------------------ consensus_9598#0 TTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCT 180 consensus_9598#1 ------------------------------------------------------------ consensus_9598#0 CGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGGGGATGACGACCTCCTGGCGGCGGCGCG 240 consensus_9598#1 ------------------------------------------------------------ consensus_9598#0 CGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGA 300 consensus_9598#1 --------------------------AGGAGGTACTCCATGGCATACCGCGGCACCCCGA 34 * ** * * * ** * *********** consensus_9598#0 GCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGG 360 consensus_9598#1 GCTGGCGTTCGAGGAAGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGG 94 *************** ******************************************** consensus_9598#0 CGTCCCCTACCAGTGGCCCGTCGCGCGCACCGGCGTCGTCGCCACGATCGCCGGCGGCGG 420 consensus_9598#1 CGTCCCCTACCAGTGGCCCGTCGCGCGCACCGGCGTCCTCGCCACGATCGCCGGCGGCGG 154 ************************************* ********************** consensus_9598#0 CGGCGGCGATGGCCCCGTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCCGTGCAGGA 480 consensus_9598#1 CGGCGGCGATGGCCCCGTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCCGTGCAAGA 214 ********************************************************* ** consensus_9598#0 ATTGGTAGATTGGGAACACAAGAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGA 540 consensus_9598#1 ATTGGTAGATTGGGAACACAATAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGA 274 ********************* ************************************** consensus_9598#0 TGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACT 600 consensus_9598#1 TGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACT 334 ************************************************************ consensus_9598#0 CAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTA 660 consensus_9598#1 CAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTA 394 ************************************************************ consensus_9598#0 TGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCC 720 consensus_9598#1 TGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCC 454 ************************************************************ consensus_9598#0 GGCTCTTCCGGTGGGCGTGGTTGCAGCCAGGCCTGGGCCATTCGCCGCAACGTCAGGCAG 780 consensus_9598#1 GGCTCTTCCGGTGGGCGTGGTTGCAGCCAG------------------------------ 484 ****************************** consensus_9598#0 GTTCTTGGCAACTATCACTGGAAAGGGTGGCCATGCTGCATCCCCCATGACGCCATTGAT 840 consensus_9598#1 ------------------------------------------------------------ consensus_9598#0 CCTGTTGTCGCTGCATCCAATGCCATC 867 consensus_9598#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||