These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9604#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1434 fasta sequence [ATTTTCGATAATAATATTTTGGATTTCACACCATCACATGCTTGGTAGTAAAAAATATACAAGATTTAGGCAGAGCAAGTCAATGAT-CTGGGATATACATATAAATGGATGTTTCAGTTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGATCTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCAGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGCTGAAATTTTGCACAGGTGAGCAAGAACCATACATGCATAGACTGACAAATATCACTCTGAAGAGATGTTCAGAGAAAGGTGTTCTTCTGAACTTTCTTCAGAAGCTCATGTTGTCTCATGGAAGAAGGGATTCTACTCTCAAGATGGATAAACATGTTTGAGTTCAGAAGCTGCATTTCAGCTGTGCACTGCTAAAATGGAAGAATGCAGAGTGTCACCCATAATTTAGATGCTTACTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTANGGGTCCATGTCGTCTGATTTGGCAAAAATACACACAAATTGGCATCAAATGAAGAGCGTAAAAAACAGTGATTCTCAGAATAAGTTTGAGAAGATTGTGATTGAGTATGTCTAGCCCCTACGTACACATGCTTTCTCACTCTAACGCTATGATGTTTTTAACTTTTTACTCGAGTAGGAGTGTAGGACAGGACAGCACAAGCAAAACTCCACGATATACTGGCGTGCTTTTATCCATCCTTCGTCGTTTTCGCATGCAGATACATATTTTTTTTTAGGTTTGCTTTAGAGTAATGAAGTGAAATAAAACAATTGTTAGGCATTAACAACAGGACATCAAGCACTATAAGTCACCGTTGACCCATGATCTAGCTAGAACAACATGCTGATAATTGCTTAACCAACCGCGAAATGCCCCTCCTCGATCACTCTGTCTAGTATCCTCACTGGTAATGAATCATGATATCTATTGATGCCTTGTTCATGCATCTAATCTGTCAGGTTCACAATCCTAAAGAAACGATTAAGCAGTCAACCAGCAAAGAAGAGAAGAAATGGCGTAATCAAAAACAAAAGCTTTGCAAACACAGCAAGAAGAGGTAGAAGGATGTGTGTTTACTCAAGGAGTC] [-] EMBL AU165055 [ATTTTCGATAATAATATTTTGGATTTCACACCATCACATGCTTGGTAGTAAAAAATATACAAGATTTAGGCAGAGCAAGTCAATGATCCTGGGATATACATATAAATGGATGTTTCAGTTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGATCTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCAGCTGTAACCCTCCCCCTC ] [+] EMBL CB665412 [ AATGGT CTGGGATATACATATAAATGGATGTTTCAGTTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGATCTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGCTGAAATTTTGCACAGGTGAGCAAGAACCATACATGCATAGACTGACAAATATCACTCTGAAGAGATGTTCAGAGAAAGGTGTTCTTCTGAACTTTCTTCAGAAGCTCATGTTGTCTCATGGAAGAAGGGATTCTACTCTCAAGATGGATAAACATGTTTGAGTTCAGAAGCTGCATTTCAGCTGTGCACTGCTAAAATGGAAGAATGCAGAGTGTCACCCATAATTTAGATGCTTACTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTANGGGTCCATGTCGTCTGATTTGGCAAAAATACACACAAATTGGCATCAAATGAAGAGCGTAAAAAACAGTGATTCTCAGAATAAGTTTGAGAAGATTGTGATTGAGTATGTCTAGCCCCTACGTACACATGCTTTCTCACTCTA ] [-] EMBL CB665413 [ GAGTGTCACCCATATTTTAGATGCTTACTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTCTGATTTGGCAAAAATACACACAAATTGGCATCAAATGAAGAGCGTAAAAAACAGTGATTCTCAGATAAAGTTTGAGAAGATTGTGATTGAGTATGTCTAGCCCCTACGTACACATGCTTTCTCACTCTAACGCTATGATGTTTTTAACTTTTTACTCGAGTAGGAGTGTAGGACAGGACAGCACAAGCAAAACTCCACGATATACTGGCGTGCTTTTATCCATCCTTCGTCGTTTTCGCATGCAGATACATATTTTTTTTTAGGTTTGCTTTAGAGTAATGAAGTGAAATAAAACAATTGTTAGGCATTAACAACAGGACATCAAGCACTATAAGTCACCGTTGACCCATGATCTAGCTAGAACAACATGCTGATAATTGCTTAACCAACCGCGAAATGCCCCTCCTCGATCACTCTGTCTAGTATCCTCACTGGTAATGAATCATGATATCTATTGATGCCTTGTTCATGCATCTAATCTGTCAGGTTCACAATCCTAAAGAAACGATTAAGCAGTCAACCAGCAAAGAAGAGAAGAAATGGCGTAATCAAAAACAAAAGCTTTGCAAACACAGCAAGAAGAGGTAGAAGGATGTGTGTTTACTCAAGGAGTC] consensusID : consensus_9604#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence [GCATGATTCGATAAAAATATTCTGGATTTCACACCATCACATCTTTGTAGTAAAAAATATACAAAATTTAGGCAGAGCAAGTCAATGGTCTGGGATATACATATAAATGGATGTTTCAGTTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGATCTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTCCTCGAGGCCCTTGGCGCAGACGAGGAGGACCTCCAGCTTCCCGTGCACCATCTCTCCTCTTCTCTTCGATCGATCTCTCGCTAGTCTCTAGTC] [-] EMBL AK070539 [GCATGATTCGATAAAAATATTCTGGATTTCACACCATCACATCTTTGTAGTAAAAAATATACAAAATTTAGGCAGAGCAAGTCAATGGTCTGGGATATACATATAAATGGATGTTTCAGTTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGATCTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTCCTCGAGGCCCTTGGCGCAGACGAGGAGGACCTCCAGCTTCCCGTGCACCATCTCTCCTCTTCTCTTCGATCGATCTCTCGC ] [+] EMBL CB967281 [ AAAAATATACAAAATTTAGGCAGAGCAAGTCAATGGTCTGGGATATACATATAAATGGATGTTTCAGTTCTTAGGACATCATAGCACGGAGTA TGTTGACAAGCACATTAATTCTTGAGACAAGATCTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAAGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTCCTCGAGGCCCTTGGCGCAGACGAGGAGGACCTCCAGCTTCCCGTGCACCATCTCTCCTCTTCTCTTCGATCGATCTCTCGCTAGTCTCTAGTC] consensusID : consensus_9604#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [TAAATACTCACTAGAATAGCTGCGGCGTAAATATACAAAATAGGCAGCAGTAGGTCGGGATATACATATAATGGATGTCAGTTCAGGACATCATAGCACGGAGTATGTGACAAGCACATTAATTCTGAGACAAGATCTCCTCTCTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAAGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTCTCGAGGCCCTTGGCGCAGACGAGGAGGACTCCAGCTCGCGGGCAGCATCTCTCCTCTTCTCTTCGATCGATCTCTCGTAGTCTCTAGTTTCTGCCGCTACGGCGAATCTGG] [+] EMBL CB965542 [TAAATACTCACTAGAATAGCTGCGGCGTAAATATACAAAATAGGCAGCAGTAGGTCGGGATATACATATAATGGATGTCAGTTCAGGACATCATAGCACGGAGTATGTGACAAGCACATTAATTCTGAGACAAGATCTCCTCTCTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAAGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTCTCGAGGCCCTTGGCGCAGACGAGGAGGACTCCAGCTCGCGGGCAGCATCTCTCCTCTTCTCTTCGATCGATCTCTCGTAGTCTCTAGTTTCTGCCGCTACGGCGAATCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9604#1 GCATGATTCGATAAAAATATTCTGGATTTCACACCATCACA-TCTTTGTAGTAAAAAATA 59 consensus_9604#2 -----------------------TAAATACTCACTAGAATA-GCTGCGGCGTAAA---TA 33 consensus_9604#0 ---ATTTTCGATAATAATATTTTGGATTTCACACCATCACATGCTTGGTAGTAAAAAATA 57 * * * *** * * * ** * ***** ** consensus_9604#1 TACAAAATTTAGGCAGAGCAAGTCAATGGTCTGGGATATACATATAAATGGATGTTTCAG 119 consensus_9604#2 TACAAAAT--AGGCAG-------CAGTAGGTCGGGATATACATATAA-TGGATGT--CAG 81 consensus_9604#0 TACAAGATTTAGGCAGAGCAAGTCAATGATCTGGGATATACATATAAATGGATGTTTCAG 117 ***** ** ****** ** * *************** ******* *** consensus_9604#1 TTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGAT 179 consensus_9604#2 TTC--AGGACATCATAGCACGGAGTATG--TGACAAGCACATTAATTCT-GAGACAAGAT 136 consensus_9604#0 TTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGAT 177 *** ********************** ******************* ********** consensus_9604#1 CTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCC 239 consensus_9604#2 CTCCTCTC--TGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCC 194 consensus_9604#0 CTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCAGCTGTAACCCTCCCC 237 ******** ********************************** *************** consensus_9604#1 CTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAAC 299 consensus_9604#2 CTCGTTCTCGTGGTTGTGATGATGGCGAGTT-CCGCTGCTGGAGTGAAGGTGAGAGCAAC 253 consensus_9604#0 CTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAAC 297 ******************************* **************************** consensus_9604#1 CTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCT 359 consensus_9604#2 CTTGATCTCTCCACAGTACTTCTCCTCCT-GACGACACGGTGGACGGCTGGAGGAAGGCT 312 consensus_9604#0 CTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCT 357 ***************************** ****************************** consensus_9604#1 GCCTTCCAGGAACACAGGCTCCAGAGGAATG----------------------------- 390 consensus_9604#2 GCCTTCCAGGAACACAGGCTCCAGAGGAATG----------------------------- 343 consensus_9604#0 GCCTTCCAGGAACACAGGCTCCAGAGGAATGCTGAAATTTTGCACAGGTGAGCAAGAACC 417 ******************************* consensus_9604#1 ------------------------------------------------------------ consensus_9604#2 ------------------------------------------------------------ consensus_9604#0 ATACATGCATAGACTGACAAATATCACTCTGAAGAGATGTTCAGAGAAAGGTGTTCTTCT 477 consensus_9604#1 ------------------------------------------------------------ consensus_9604#2 ------------------------------------------------------------ consensus_9604#0 GAACTTTCTTCAGAAGCTCATGTTGTCTCATGGAAGAAGGGATTCTACTCTCAAGATGGA 537 consensus_9604#1 ------------------------------------------------------------ consensus_9604#2 ------------------------------------------------------------ consensus_9604#0 TAAACATGTTTGAGTTCAGAAGCTGCATTTCAGCTGTGCACTGCTAAAATGGAAGAATGC 597 consensus_9604#1 -----------------------------TTTGCTTCACCGACGAAATCGTCAGCTGAGA 421 consensus_9604#2 -----------------------------TTTGCTTCACCGACGAAATCGTCAGCTGAGA 374 consensus_9604#0 AGAGTGTCACCCATAATTTAGATGCTTACTTTGCTTCACCGACGAAATCGTCAGCTGAGA 657 ******************************* consensus_9604#1 AGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGA 481 consensus_9604#2 AGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGA 434 consensus_9604#0 AGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGA 717 ************************************************************ consensus_9604#1 CGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCT 541 consensus_9604#2 CGAAAGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCT 494 consensus_9604#0 CGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCT 777 **** ******************************************************* consensus_9604#1 CCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTCCT 601 consensus_9604#2 CCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTC-T 553 consensus_9604#0 CCTGAGTGCGGCAGGTGAGGATCACGTANGGGTCCATGTCGTCTGATTTGGCAAAAATAC 837 **************************** ************* * * ** consensus_9604#1 CGAGGCCCTTGGCGCAGACGAGGAG---GACCTCCAGCTTCCCGTGCACCATCTCTCCTC 658 consensus_9604#2 CGAGGCCCTTGGCGCAGACGAGGAG---GAC-TCCAGCT-CGCGGGCAGCATCTCTCCTC 608 consensus_9604#0 ACACAAATTGGCATCAAATGAAGAGCGTAAAAAACAGTGATTCTCAGAATAAGTTTGAGA 897 * * * ** * ** *** * *** * * * * * consensus_9604#1 TTCTCTTCGATCGATCTCTCGCTAGTCTCTAGTC-------------------------- 692 consensus_9604#2 TTCTCTTCGATCGATCTCTCG-TAGTCTCTAGTTTCTGCCGCTACGGCGAATCTGG---- 663 consensus_9604#0 AGATTGTGATTGAGTATGTC--TAGCCCCTACGTACACATGCTTTCTC-ACTCTAACGCT 954 * * * * * ** *** * *** consensus_9604#1 ------------------------------------------------------------ consensus_9604#2 ------------------------------------------------------------ consensus_9604#0 ATGATGTTTTTAACTTTTTACTCGAGTAGGAGTGTAGGACAGGACAGCACAAGCAAAACT 1014 consensus_9604#1 ------------------------------------------------------------ consensus_9604#2 ------------------------------------------------------------ consensus_9604#0 CCACGATATACTGGCGTGCTTTTATCCATCCTTCGTCGTTTTCGCATGCAGATACATATT 1074 consensus_9604#1 ------------------------------------------------------------ consensus_9604#2 ------------------------------------------------------------ consensus_9604#0 TTTTTTTAGGTTTGCTTTAGAGTAATGAAGTGAAATAAAACAATTGTTAGGCATTAACAA 1134 consensus_9604#1 ------------------------------------------------------------ consensus_9604#2 ------------------------------------------------------------ consensus_9604#0 CAGGACATCAAGCACTATAAGTCACCGTTGACCCATGATCTAGCTAGAACAACATGCTGA 1194 consensus_9604#1 ------------------------------------------------------------ consensus_9604#2 ------------------------------------------------------------ consensus_9604#0 TAATTGCTTAACCAACCGCGAAATGCCCCTCCTCGATCACTCTGTCTAGTATCCTCACTG 1254 consensus_9604#1 ------------------------------------------------------------ consensus_9604#2 ------------------------------------------------------------ consensus_9604#0 GTAATGAATCATGATATCTATTGATGCCTTGTTCATGCATCTAATCTGTCAGGTTCACAA 1314 consensus_9604#1 ------------------------------------------------------------ consensus_9604#2 ------------------------------------------------------------ consensus_9604#0 TCCTAAAGAAACGATTAAGCAGTCAACCAGCAAAGAAGAGAAGAAATGGCGTAATCAAAA 1374 consensus_9604#1 ------------------------------------------------------------ consensus_9604#2 ------------------------------------------------------------ consensus_9604#0 ACAAAAGCTTTGCAAACACAGCAAGAAGAGGTAGAAGGATGTGTGTTTACTCAAGGAGTC 1434 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||