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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1515 fasta sequence
[TGAGTCGGAGCTGGCTTGGCGGCGGCCGCTCTAGATTAGTGGATCCCTGCTCTGTATGAATTCGGCACGAGGCTTCATTTTCCACTCTCCCCTCCCGGCCTCCCACCTCCCATCCGGATCTCGCCGCGCCGCGCCGCGCCACCCTTTTCCGCGCCGCGTCGTCGGGCATGGGCGTCGCCACCAACGGCTCCTCCTCCTCCACCTCGGAGTCGGCGGAGACCGCGCAGCCGCAGGCGTACAAGTTCCTCATCTACGGCCGGACCGGGTGGATCGGGGGCCTGCTCGGCCAGCTCTGCGCCGCGCGGGGCATCCCCTTCGCCTACGGCGCCGGGCGCCTCGAGAACCGCGCCCAGCTCGAGGCCGACATCGACGAGGTCGCGCCCACCCACGTGTTCAATGCCGCGGGGGTCACCGGCCGCCCCAACGTCGACTGGTGCGAGACCCACCGCACCGAGACCATCCGCGCCAACGTC-TGCGGCACGCTTACGCTCGCCGACG-T-CTGCCGCGCCCGCGGCCTCGTG-CTCATCAACT-ACGCCACGGGCTGCATCTTCGAGTACGACGCCGGCCACCAGC-TCGGCACAGGGATCGGGTTCAAGGAGGAGGACACGCCCAACTTCGTCGGATCATTCTACTCCAAAACCAAGGCCATGGTTGAGGAACTGCTAAAAAACTACGAGAATGTATGTACACTTCGTGTAAGGATGCCTATTTCATCCGATCTATCCAATCCTCGCAACTTCATCACTAAAATCGCCCGGTATGATAAAGTGGTTGATATACCAAATTCAATGACAATATTGGATGAGCTTCTTCCTATCTCAATCGAAATGGCAAAGAGAAACCTCACTGGGATCTGGAATTTCACTAATCCTGGCGTGGTGAGCCACAATGAAATATTGGAAATGTATAGGGATTACATTGATCCGAATTTTTCTTGGAAGAACTTTACCCTGGAGGAGCAAGCCAAGGTCATAGTTGCACCGAGAAGCAATAATGAGCTTGATTGTACCAAGCTGAAGGCGGAATTTCCAGAACTTTTGTCAATCAAGGATTCTCTGGTAAGGTATGTTTTCAAGCCAAATCAGAAGACGTCCAAGGCTTGA-CAAATGGAA-CGGTCTG-CA-CA-CAATGTTGTTGTTATTTATTCCATATAAATTGACATTTCTCTCCCTGGTGACAATCAATAAGCATG-CATGATGACTCTTTCCCTGTGTGTGCATTGTTTTTGAAGCAGATAGGTTTCTCATAGGAAGTCATA-CCCCGTCCCGTCATATTGATTACATAGAACAAGGCAAGGTGCCATATAGTTCAACTTTTGTATGTCTTCTGGATCGTATGAATA-CCGTGGGAAATGGGTAAGGGTGGAGATTCCTCTGTTTGTATCTTACAATTGGAATACAGTCAGTTGCACTGCGTGTTGTTCAATAGGAAATGGCTTTGGACTTTCCTTCATGTAAC-ATGTAATGTAATACATTGAATTCTCAGCTAATATATTGATATTTGAT-GGTAAAAAAAAAA]
[+] EMBL BE040761 [TGAGTCGGAGCTGGCTTGGCGGCGGCCGCTCTAGATTAGTGGATCCCTGCTCTGTATGAATTCGGCACGAGGCTTCATTTTCCACTCTCCCCTCCCGGCCTCCCACCTCCCATCCGGATCTCGCCGCGCCGCGCCGCGCCACCCTTTTCCGCGCCGCGTCGTCGGGCATGGGCGTCGCCACCAACGGCTCCTCCTCCTCCACCTCGGAGTCGGCGGAGACCGCGCAGCCGCAGGCGTACAAGTTCCTCATCTACGGCCGGACCGGGTGGATCGGGGGCCTGCTCGGCCAGCTCTGCGCCGCGCGGGGCATCCCCTTCGCCTACGGCGCCGGGCGCCTCGAGAACCGCGCCCAGCTCGAGGCCGACATCGACGAGGTCGCGCCCACCCACGTGTTCAATGCCGCGGGGGTCACCGGCCGCCCCAACGTCGACTGGTGCGAGACCCACCG ACCGAGACCATCCGCGCCAACGTC TGCGGCACGCTTACGCTCGCCGACG T CTGCCGCGCCCGCGGCCTCGTGCCTCAT AACT ACGCCACGGGCTGCATCTTC AGTACGACGCCGGCCACCAGCTTCGG ACAGGGATCGGGGTCAAGGAGGAGGACACGCCCAAC NCGTCGGg ]
[+] EMBL AK071766 [ cccagacAGGCTCCATTTTCCACTCTCCCCTCCTGGCCTCCCACCTCCCATCCGGATCTCGCCGCGCCGCGCCGCGCCACCCTTTTCCGCGCCGCGTCGTCGGGCATGGGCGTCGCCACCAACGGCTCCTCCTCCTCCACCTCGGAGTCGGCGGAGACCGCGCAGTCGCAGGCGTACAAGTTCCTCATCTACGGCCGGACCGGGTGGATCGGGGGCCTGCTCGGCCAGCTCTGCGCCGCGCGGGGCATCCCCTTCGCCTACGGCGCCGGGCGCCTCGAGAACCGCGCCCAGCTCGAGACCGACATCGACGAGGTCGCGCCCACCCACGTGTTCAATGCCGCGGGGGTCACCGGCCGCCCCAACGTCGACTGGTGCGAGACCCACCGCACCGAGACCATCCGCGCCAACGTC TGCGGCACGCTTACGCTCGCCGACG T CTGCCGCGCCCGCGGCCTCGTG CTCATCAACT ACGCCACGGGCTGCATCTTCGAGTACGACGCCGGCCACCAGC TCGGCACAGGGATCGGGTTCAAGGAGGAGGACACGCCCAACTTCGTCGGATCATTCTACTCCAAAACCAAGGCCATGGTTGAGGAACTGCTAAAAAACTACGAGAATGTATGTACACTTCGTGTAAGGATGCCTATTTCATCCGATCTATCCAATCCTCGCAACTTCATCACTAAAATCGCCCGGTATGATAAAGTGGTTGATATACCAAATTCAATGACAATATTGGATGAGCTTCTTCCTATCTCAATCGAAATGGCAAAGAGAAACCTCACTGGGATCTGGAATTTCACTAATCCTGGCGTGGTGAGCCACAATGAAATATTGGAAATGTATAGGGATTACATTGATCCGAATTTTTCTTGGAAGAACTTTACCCTGGAGGAGCAAGCCAAGGTCATAGTTGCACCGAGAAGCAATAATGAGCTTGATTGTACCAAGCTGAAGGCGGAATTTCCAGAACTTTTGTCAATCAAGGATTCTCTGGTAAGGTATGTTTTCAAGCCAAATCAGAAGACGTCCAAGGCTTGA CAAATGGAA CGGTCTG CA CA CAATGTTGTTGTTATTTATTCCATATAAATTGACATTTCTCTCCCTGGTGACAATCAATAAGCATG CATGATGACTCTTTCCCTGTGTGTGCATTGTTTTTGAAGCAGATAGGTTTCTCATAGGAAGTCATA CCCCGTCCCGTCATATTGATTACATAGAACAAGGCAAGGTGCCATATAGTTCAACTTTTGTATGTCTTCTGGATCGTATGAATA CCGTGGGAAATGGGTAAGGGTGGAGATTCCTCTGTTTGTATCTTACAATTGGAATACAGTCAGTTGCACTGCGTGTTGTTCAATAGGAAATGGCTTTGGACTTTCCTTCATGTAAC ATGTAATGTAATACATTGAATTCTCAGCTAATATA ]
[-] EMBL OSS14237A [ CCAACGTCGACT GTTCGAGACCCACCGNACCGAGACCATCCGCGCCAACGTCTTGCGGC NACTTACGCTCGCCGACGNTACT NGCG CCGCGGCCTCGTG CTCATCAACTNAC CCACGGGCTGCATCTTCGAGTACGACGCNGGCCACCAGC TCGGCACAGGGATCGGGTTCAAGGAGGAGGACACGCCCAACTTCGTCGGATCATTCTACTCCAAAACCAAGGCCATGGTTGAGGAACTGCTAAAAAACTACGAGAATGTATAGATACTTCGTGTAAGGATGCCTATTTCATCCGATCTATCCA ]
[+] EMBL BM419622 [ GTCC AGGCTTGACCAAATGGAACCGGTCTGCCACCACCAATGTTGTTGTTATTTATNCCATATAAATTGACATTTCTCT CCTGGTGACAATCAATAAGCATGCCATGATGACTCTTTCCCTGTGTGTGCATTGTTTTTGAACCAGATAGGTTTCTCATAGGAAGTCATACCCCCGTCCCGTCATATTGATTACATAGAACAAGGCAAGGTGCCATATAGTTCAACTTTTGTATGTCTTCTGGATCGTATGAATACCCGTGGGAAATGGGTAAGGTTGGAGATTCCTCTGTTTGTATCTTAC ATGGGAATACAGTCAGTTGCACTGCGTGTTGTTCAATAGGAAATGGCTTTGGACTTTCCTTCATGTAAC ATGTAATGTAATACATTGAATTCTCAGCTAATATATTGATATTTGATGGGTAAAAAAAAAA]
[+] EMBL AU166261 [ A CAAATGGAA CGGTCTG CA CA CAATGTTGTTGTTATTTATTCCATATAAATTGACATTTCTCTCCCTGGTGACAATCAATAAGCATG CATGATGACTCTTTCCCTGTGTGTGCATTGTTTTTGAAGCAGATAGGTTTCTCATAGGAAGTCATA CCCCGTCCCGTCATATTGATTACATAGAACAAGGCAAGGTGCCATATAGTTCAACTTTTGTATGTCTTCTGGATCGTATGAATA CCGTGGGAAATGGGTAAGGGTGGAGATTCCTCTGTTTGTATCTTACAATTGGAATACAGTCAGTTGCACTGCGTGTTGTTCAATAGGAAATGGCTTTGGACTTTCCTTCATGTAACTATGTAATGTAATACATTGAATTCTCAGCTAATATATTGATATTTGAT AGTAACAAAAA ]
consensusID : consensus_9607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence
[CTGNGTACGCGTGGGCGGCGATGGATCATGGTGGATCACGCCAGGTGCTGCAGGGCCGCACCACACCGCTGCAGCGTCACCGTCGGTGCAGCACACGCCGCCCCGCCACCCGCGCGCACATCGGTGACAGCATCAGCTCACCTCGGTAGCTATTAAAATCCATCCCCCTTCTCCACCTCACCTCTCCTCCCTCCCAGACAGGCTCCATTTTCCACTCTCCCCTCCTGGCCTCCCACCTCCCATNCGGATCTCGNCGNGTCGCGTCGTGTCAC]
[+] EMBL OSC100131 [CTGNGTACGCGTGGGCGGCGATGGATCATGGTGGATCACGCCAGGTGCTGCAGGGCCGCACCACACCGCTGCAGCGTCACCGTCGGTGCAGCACACGCCGCCCCGCCACCCGCGCGCACATCGGTGACAGCATCAGCTCACCTCGGTAGCTATTAAAATCCATCCCCCTTCTCCACCTCACCTCTCCTCCCTCCCAGACAGGCTCCATTTTCCACTCTCCCCTCCTGGCCTCCCACCTCCCATNCGGATCTCGNCGNGTCGCGTCGTGTCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9607#0 TGAGTCGGAGCTGGCTTGGCGGCGGCCGCTCTAGATTAGTGGATCCCTGCTCTGTATGAA 60
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 TTCGGCACGAGGCTTCATTTTCCACTCTCCCCTCCCGGCCTCCCACCTCCCATCCGGATC 120
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 TCGCCGCGCCGCGCCGCGCCACCCTTTTCCGCGCCGCGTCGTCGGGCATGGGCGTCGCCA 180
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 CCAACGGCTCCTCCTCCTCCACCTCGGAGTCGGCGGAGACCGCGCAGCCGCAGGCGTACA 240
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 AGTTCCTCATCTACGGCCGGACCGGGTGGATCGGGGGCCTGCTCGGCCAGCTCTGCGCCG 300
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 CGCGGGGCATCCCCTTCGCCTACGGCGCCGGGCGCCTCGAGAACCGCGCCCAGCTCGAGG 360
consensus_9607#1 -------------------------------------------------CTGNGTACGCG 11
* * *
consensus_9607#0 CCGACATCGACGAGGTCGCGCCCACCCACGTGTTCAATGCCGCGGGGGT-CACCG-GCCG 418
consensus_9607#1 TGGGCGGCGATG-GATCATGGTGGATCACG--CCAGGTGCTGCAGGGCCGCACCACACCG 68
* * *** * * ** * **** *** ** *** **** ***
consensus_9607#0 CCCCAACGTCGAC--TGGTGCGAGACCCACCGCACCGAGACCATCCGCGCCAACGTCTGC 476
consensus_9607#1 CTGCAGCGTCACCGTCGGTGCAGCACACGCCGCCCCG---CCACCCGCGCGCACATCGGT 125
* ** **** * ***** ** * **** *** *** ****** ** ** *
consensus_9607#0 GGCACGCTTACGCTCGCCGACGTCTGCCGCGCCCGCGGCCTCGTGCTCATCAACTACGCC 536
consensus_9607#1 GACA-GCATCAGCTCACC----TCGGTAGCTATTAAAATC-CATCCCCCTTCTCCACCTC 179
* ** ** * **** ** ** * ** * * * * * * * ** *
consensus_9607#0 ACGGGCTGCATCTTCGAGTACGACGCCGGCCACCAGCTCGGCA--CAGGGATCGGGTTCA 594
consensus_9607#1 ACCTCTCCTCCCTCCCAGACAGGCTCCATTTTCCACTCTCCCCTCCTGGCCTCCCACCTC 239
** ** * ** * * ** *** * * ** **
consensus_9607#0 AGGAGGAGGACACGCCCAACTTCGTCGGATCATTCTACTCCAAAACCAAGGCCATGGTTG 654
consensus_9607#1 CCATNCGGATCTCGNCGNGTCGCGTCGTGTCAC--------------------------- 272
* * ** * ***** ***
consensus_9607#0 AGGAACTGCTAAAAAACTACGAGAATGTATGTACACTTCGTGTAAGGATGCCTATTTCAT 714
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 CCGATCTATCCAATCCTCGCAACTTCATCACTAAAATCGCCCGGTATGATAAAGTGGTTG 774
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 ATATACCAAATTCAATGACAATATTGGATGAGCTTCTTCCTATCTCAATCGAAATGGCAA 834
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 AGAGAAACCTCACTGGGATCTGGAATTTCACTAATCCTGGCGTGGTGAGCCACAATGAAA 894
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 TATTGGAAATGTATAGGGATTACATTGATCCGAATTTTTCTTGGAAGAACTTTACCCTGG 954
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 AGGAGCAAGCCAAGGTCATAGTTGCACCGAGAAGCAATAATGAGCTTGATTGTACCAAGC 1014
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 TGAAGGCGGAATTTCCAGAACTTTTGTCAATCAAGGATTCTCTGGTAAGGTATGTTTTCA 1074
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 AGCCAAATCAGAAGACGTCCAAGGCTTGACAAATGGAACGGTCTGCACACAATGTTGTTG 1134
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 TTATTTATTCCATATAAATTGACATTTCTCTCCCTGGTGACAATCAATAAGCATGCATGA 1194
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 TGACTCTTTCCCTGTGTGTGCATTGTTTTTGAAGCAGATAGGTTTCTCATAGGAAGTCAT 1254
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 ACCCCGTCCCGTCATATTGATTACATAGAACAAGGCAAGGTGCCATATAGTTCAACTTTT 1314
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 GTATGTCTTCTGGATCGTATGAATACCGTGGGAAATGGGTAAGGGTGGAGATTCCTCTGT 1374
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 TTGTATCTTACAATTGGAATACAGTCAGTTGCACTGCGTGTTGTTCAATAGGAAATGGCT 1434
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 TTGGACTTTCCTTCATGTAACATGTAATGTAATACATTGAATTCTCAGCTAATATATTGA 1494
consensus_9607#1 ------------------------------------------------------------
consensus_9607#0 TATTTGATGGTAAAAAAAAAA 1515
consensus_9607#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||