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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 830 fasta sequence
[TTTTTTTTTTTTTTTT---TG-ACAAAACTGCTCATGTTTTATAAGACGAACAACAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTGGGAGATATTCAACAATATGTGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCTGCTCAAGAGCATGAAATCTCCTTTTCTTGCTTCCATCAGGACTCCACCAGTTGGATCTGCGCTGCTGCT]
[-] EMBL AU166382 [TTTTTTTTTTTTTTTTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGTNTATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAANAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGNGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCANATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGNGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAA ]
[+] EMBL CB667904 [ tcTTTTTTTT TG ACAAAACTGCTCATGTTTTATAAGACGAACCTCAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGATAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTGGGAGATATTCAACAATATGTGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCTGCTCAAGAGCATGAAATCTCCTTTTCTTGCTTCCATCAGGACTCCACCAGTTGGATCTGCGCTGCTGCT]
[+] EMBL CB663983 [ GCTCATGTTTTATAAGACGAACAACAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCACATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTGGGAGATATTCAACAATATGTGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCTGCTCAAGAGCATGAAATCTCC ]
[-] EMBL CA998316 [ GTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGTTGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTG ]
consensusID : consensus_9611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[TTTTTTGATACGCAAGGTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTTGAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTTGAGGATTTGTTTGGAGTTATATTTGTGCTTCCATCAGACAATCCTGTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCATTTGACCATCATTCTCAAAGTGGTGTGAAAGTATTGGGTCTAGAGTATCATCAAAAAAGAAAGCTGATGTCGTTATCATCCCATTCATGTAGAGTAGA]
[-] EMBL BI810442 [TTTTTTGATACGCAAGGTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGTATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGCGAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTCAACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGACGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAATGTTACTTGAAGTATGCTCCTGGACCACCAATCAAGCTTCGGTAATGACATCAGCATATTTGAGGATTTGTTTGGAGTTATATTTGTGCTTCCATCAGACAATCCTGTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCATTTGACCATCATTCTCAAAGTGGTGTGAAAGTATTGGGTCTAGAGTATCATCAAAAAAGAAAGCTGATGTCGTTATCATCCCATTCATGTAGAGTAGA]
consensusID : consensus_9611#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence
[TTTTTTTTTTGGCATGAAACATGCACNTAGAAACTCCACAGTTAACTAAAATGACATCACGCTTGTTTTCCACAAAATGATGAACAAAAACATAGGGTATACAGTAATTAGTCATTACCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATACAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGC]
[-] EMBL BM422063 [TTTTTTTTTTGGCATGAAACATGCACNTAGAAACTCCACAGTTAACTAAAATGACATCACGCTTGTTTTCCACAAAATGATGAACAAAAACATAGGGTATACAGTAATTAGTCATTACCATATTGAGGATTGTTGGAGTTATATTGTGCTTCCATCAGACAATCCTGCTCTAACTGCGGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAATGGTGGAAGTATTGGGTCTAGGTTATCATCAAACAGAAGCTGCATGTCGTTATCATCCCATTCATGTAGAGTAGAGTTATACAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9611#0 TTTTTTTTTTT------TTTTTTGACAAAACTGCTCATGTTTTATAAGACGAACAACAGT 54
consensus_9611#1 TTTTTTGATACGCAAGGTAAATGTACAAAACTGCTCATGTTTTATAAGACGAACAACAGT 60
consensus_9611#2 ------------------------------------------------------------
consensus_9611#0 ATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGC 114
consensus_9611#1 ATATACACCAAATGAATTCGATGGTAGCAACCATCGCTAGTGTAAGACGACGAGAACTGC 120
consensus_9611#2 ------------------------------------------------------------
consensus_9611#0 GAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTC 174
consensus_9611#1 GAAAAGGCGTCCCCTGTCCCCAAAAAGTGCCTTGAACAAGAAAGGTAGTTCTGTATGGTC 180
consensus_9611#2 ------------------------------------------------------------
consensus_9611#0 AACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGA 234
consensus_9611#1 AACCAGATTAGAGTTATATCTTCTTCTGTGTTAGCATAATTCATCGGTACACCCTGAGGA 240
consensus_9611#2 -----------------------------------------------------------T 1
consensus_9611#0 CGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAAT 294
consensus_9611#1 CGCCATTTCGGGATGCCAATGGTGCAGATGCGCCCGGAGGTTGGTCACCGAAGAACTAAT 300
consensus_9611#2 TTTTTTTTTGGCATGAAACATGCACNTAGAAACTCCACAGTTAACTAAAATGACATCACG 61
*** ** *** * * * * * * *** * * *
consensus_9611#0 GTTACTGCAAGTATGCTCCTGGACCACCAATCAAGCTT--CGGTAATGA--CATCAGCAT 350
consensus_9611#1 GTTACTTGAAGTATGCTCCTGGACCACCAATCAAGCTT--CGGTAATGA--CATCAGCAT 356
consensus_9611#2 CTTGTTTTCCACAAAATGATGAACAAAAACATAGGGTATACAGTAATTAGTCATTACCAT 121
** * * * ** ** * * * * * * ***** * *** * ***
consensus_9611#0 ATT-GAGGATTG--TTGGAGTTATATT-GTGCTTCCATCAGACAATCCTGCTCTAACTGC 406
consensus_9611#1 ATTTGAGGATTTGTTTGGAGTTATATTTGTGCTTCCATCAGACAATCCTG-TCTAACTGC 415
consensus_9611#2 ATT-GAGGATTG--TTGGAGTTATATT-GTGCTTCCATCAGACAATCCTGCTCTAACTGC 177
*** ******* ************* ********************** *********
consensus_9611#0 GGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAA-TGG 465
consensus_9611#1 GGAAAATCATAATCTTGAACACTCAAAGGAGGGCC-ATTTGACCATCATTCTCAAAGTGG 474
consensus_9611#2 GGAAAATCATAATCTTGAACACTCAAAGGAGGGCCCATTTGACCATCATTCTCAAA-TGG 236
*********************************** ******************** ***
consensus_9611#0 TG--GAAGTATTGGGTCTAGGTTATCATCAAACAG--AAGCTGCATGTCGTTATCATCCC 521
consensus_9611#1 TGTGAAAGTATTGGGTCTAGAGTATCATCAAAAAAGAAAGCTG-ATGTCGTTATCATCCC 533
consensus_9611#2 TG--GAAGTATTGGGTCTAGGTTATCATCAAACAG--AAGCTGCATGTCGTTATCATCCC 292
** *************** ********** * ****** ****************
consensus_9611#0 ATTCATGTAGAGTAGAGTTATCAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCAA 581
consensus_9611#1 ATTCATGTAGAGTAGA-------------------------------------------- 549
consensus_9611#2 ATTCATGTAGAGTAGAGTTATACAGCGAAAGGCTCCTCAGATGAACCGAGAGTATCAGCA 352
****************
consensus_9611#0 CGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGCAGGACTTGGAACTGGTTGTGAGT 641
consensus_9611#1 ------------------------------------------------------------
consensus_9611#2 ACGTTAGACGTTTGCATGTCCATGGGTGTGGCAACTGC---------------------- 390
consensus_9611#0 TGGCCGAACAAATGGCTCCTTCCACTGGATTTACTTGACCTGATGTTTCTGGGACAGGTG 701
consensus_9611#1 ------------------------------------------------------------
consensus_9611#2 ------------------------------------------------------------
consensus_9611#0 GGAGATATTCAACAATATGTGCCCCACGGCCAGAGGTCTCCTGATCAGTTACAGGGCCCT 761
consensus_9611#1 ------------------------------------------------------------
consensus_9611#2 ------------------------------------------------------------
consensus_9611#0 GCTCAAGAGCATGAAATCTCCTTTTCTTGCTTCCATCAGGACTCCACCAGTTGGATCTGC 821
consensus_9611#1 ------------------------------------------------------------
consensus_9611#2 ------------------------------------------------------------
consensus_9611#0 GCTGCTGCT 830
consensus_9611#1 ---------
consensus_9611#2 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||