cluster # 9618

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Oryza sativa
cluster # 9618 cluster # 9618 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9618#0 length = 838 sequences # 5

consensus_9618#1 length = 172 sequences # 1

consensusID : consensus_9618#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 838
fasta sequence

                              [TCTCTCCTCGCGCCGCCTCCCCAACTAACCTTCCTCTTGCGGCGGCGGCGGCGGCGCCACTGCCGGAGAAGAAACCCGACCGCGCCTCGCCTCGCCGAGCGGCGAAGCGGCATAGGGCGGTAGCGGCGGCACATGGAGGGGGTGAACGGCGGGGCGGTGGAGGAGGAGAGGAAGCCGCTGTCGGAGGTGGTGGGCGACTGCGTGCAGCGCTGGTTCCAGGACGCGCTCAAGGAGGCCCGCCGCGGCGACTCCGCCATGCAGGTGCTCGTCGCGCAGATGTACCACTCCGGCTACGGCATCCCCAAGAACGAGCACAAGGGAAGAGCGTGGGCTGAGAAGGCATCTAGATACAGGCC-TTCAGTCTGGAAAGTTGGCACAAAGCGTCCGGGATATAATGCC-AGTGACTCAGATTCTGATGAAATGAATGATGATGAGAAGCAATA-ACAATGAAAGAATCAATTGTGAGTTTAGATAGAAGAATG-GCAGGGTAATGATAAATCTGGTTGTCAAACCCT-CGT-C-AATTTT-ACCAATTTGTGTGAGATTGGGGCTTCTTTCGGCTGGAGTCTGCCATGTGAGCTATCAAGTAAATTTTGTAAAACCGTTTGGATAC-TTG-GAACACACAATGTATTCAATATTGCCCCAAAAACAGAGGGAAAAATGTCAATTTAGTGGTGCTTGGTGCTTACAGGTTCATTATTTCAAACTTAGCTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGT--TGTCTGCCGAGTTACAACAAAAAATCTTTTCCTAAAAAA]

[+] EMBL AK064169             [TCTCTCCTCGCGCCGCCTCCCCAACTAACCTTCCTCTTGCGGCGGCGGCGGCGGCGCCACTGCCGGAGAAGAAACCCGACCGCGCCTCGCCTCGCCGAGCGGCGAAGCGGCATAGGGCGGTAGCGGCGGCACATGGAGGGGGTGAACGGCGGGGCGGTGGAGGAGGAGAGGAAGCCGCTGTCGGAGGTGGTGGGCGACTGCGTGCAGCGCTGGTTCCAGGACGCGCTCAAGGAGGCCCGCCGCGGCGACTCCGCCATGCAGGTGCTCGTCGCGCAGATGTACCACTCCGGCTACGGCATCCCCAAGAACGAGCACAAGGGAAGAGCGTGGGCTGAGAAGGCATCTAGATACAGGCC TTCAGTCTGGAAAGTTGGCACAAAGCGTCCGGGATATAATGCC AGTGACTCAGATTCTGATGAAATGAATGATGATGAGAAGCAATA ACAATGAAAGAATCAATTGTGAGTTTAGATAGAAGAATG GCAGGGTAATGATAAATCTGGTTGTCAAACCCT CGT C AATTTT ACCAATTTGTGTGAGATTGGGGCTTCTTTCGGCTGGAGTCTGCCATGTGAGCTATCAAGTAAATTTTGTAAAACCGTTTGGATAC TTG GAACACACAATGTATTCAATATTGCCCCAAAAACAGAGGGAAAAATGTCAATTTAGTGGTGCTTGGTGCTTACAGGTTCATTATTTCAAACTTAGCTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGT  TGTCTGCC                               ]
[+] EMBL C29118               [                    CCAACTAACCTTCCTCTTGCGGCGGCGGCGTCGGCG CACTNCCGGANAAGAAACCCGACCGCNCCTCGCCTCGCCGAGCGGCGAA NGGCATAGGGCGGTAG GGCGGCACATGGAGGGGGTNAACGGCGGGGCGGTGGAGGAGGAGAGGAAGCCGCTGTCGGAGGTGGTGGGCGACTGCTTGCAGCNTNGGTTCCAGGACGCGCTCAAGGAGGCCCGCCGCGGCGACTCCGCCATGCAGGTGCTCGTCGCGCAGATGTACCACTCCGGCTACGGCATCCCCAAGAACGAGCACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BI795629             [                                                                                                                                                                                                                                                                                                                                                           ATACAGCCCTTTCAGTCTGGAAAGTGGCCACAAAGCGTCCGGGATATAATGCCAAGTGACTCAGATTCTGATGAAATGAATGATGATGAGAACCAATACAC ATGAAAGAATCAATTGTGAGTTTAGATAGAAGAATGCGCAGGGTAATGATAAATCTGGTTGTCAAACCCTGCGTGCAAATTTTGACC ATTTGTGTGAGATTGGGGCTTCTTTCGGCTGGAGTCTGCCATGTGAGCTATCAAGTAAATTTTGTAAAACCGTTTGGATAC TTG GAACACAC ATGTATTCAATATTGCCCCAAAAACAGAGGGAAAAATGTC ATTTAGTGGTGCTTGGTGCTTACAGGTTCACTATTTCAAACTTAGCTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGTTGTGTCTGCCGAGTTACAACAAAAAA               ]
[+] EMBL AU172391             [                                                                                                                                                                                                                                                                                                                                                                                                                         AGATTCTGATGAAATGAATGATGATGAGAAGCAATA ACAATGAAAGAATCAATTGTGAGTTTAGATAGAAGAATG GCAGGGTAATGATAAATCTGGTTGTCAAACCCT CGT C AATTTT ACCAATTTGTGTGAGATTGGGGCTTCTTTCGGCTGGAGTCTGCCATGTGAGCTATCAAGTAAATTTTGTAAAACCGTTTGGATAC TTG GAACACACAATGTATTCAATATTGCCCCAAAAACAGAGGGAAAAATGTCAATTTAGTGGTGCTTGGTGCTTACAGGTTCATTATTTCAAACTTAGCTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGT  TGTCTGCCGAGTTACAACATTCTTTCTTTTCCTAAAAAA]
[+] EMBL OSC21061             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GAGCTATCAAGTAAATTTTGTAAAACCGTTTGAATACATTGTGTGTTC CAA GTATCCAATATTGCCCCAAAAACAGAGGGAAAAATGTCAATTTAGTGGTGCTTGGTGCTTACAGGTTCATTATTTCAAACTTAGCTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGT  TGTCT                                  ]




>consensus_9618#0
TCTCTCCTCGCGCCGCCTCCCCAACTAACCTTCCTCTTGCGGCGGCGGCGGCGGCGCCAC
TGCCGGAGAAGAAACCCGACCGCGCCTCGCCTCGCCGAGCGGCGAAGCGGCATAGGGCGG
TAGCGGCGGCACATGGAGGGGGTGAACGGCGGGGCGGTGGAGGAGGAGAGGAAGCCGCTG
TCGGAGGTGGTGGGCGACTGCGTGCAGCGCTGGTTCCAGGACGCGCTCAAGGAGGCCCGC
CGCGGCGACTCCGCCATGCAGGTGCTCGTCGCGCAGATGTACCACTCCGGCTACGGCATC
CCCAAGAACGAGCACAAGGGAAGAGCGTGGGCTGAGAAGGCATCTAGATACAGGCCTTCA
GTCTGGAAAGTTGGCACAAAGCGTCCGGGATATAATGCCAGTGACTCAGATTCTGATGAA
ATGAATGATGATGAGAAGCAATAACAATGAAAGAATCAATTGTGAGTTTAGATAGAAGAA
TGGCAGGGTAATGATAAATCTGGTTGTCAAACCCTCGTCAATTTTACCAATTTGTGTGAG
ATTGGGGCTTCTTTCGGCTGGAGTCTGCCATGTGAGCTATCAAGTAAATTTTGTAAAACC
GTTTGGATACTTGGAACACACAATGTATTCAATATTGCCCCAAAAACAGAGGGAAAAATG
TCAATTTAGTGGTGCTTGGTGCTTACAGGTTCATTATTTCAAACTTAGCTAGTTTGAGTC
CATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATT
GGTTTATGGGCTAAATGGTTGTCTGCCGAGTTACAACAAAAAATCTTTTCCTAAAAAA

consensusID : consensus_9618#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 172
fasta sequence

                              [AGAGGACGAGACAAGGGGGCTTACAGGTTCCCTATTTCAAACTAAACTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGTTGTGTCTGCCGAGTTCCAACAAAAAAAAAAAAAAA]

[-] EMBL CA760920             [AGAGGACGAGACAAGGGGGCTTACAGGTTCCCTATTTCAAACTAAACTAGTTTGAGTCCATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGGTTTATGGGCTAAATGGTTGTGTCTGCCGAGTTCCAACAAAAAAAAAAAAAAA]




>consensus_9618#1
AGAGGACGAGACAAGGGGGCTTACAGGTTCCCTATTTCAAACTAAACTAGTTTGAGTCCA
TTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATTGG
TTTATGGGCTAAATGGTTGTGTCTGCCGAGTTCCAACAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9618#0      TCTCTCCTCGCGCCGCCTCCCCAACTAACCTTCCTCTTGCGGCGGCGGCGGCGGCGCCAC 60
consensus_9618#1      ------------------------------------------------------------
                                                                                  

consensus_9618#0      TGCCGGAGAAGAAACCCGACCGCGCCTCGCCTCGCCGAGCGGCGAAGCGGCATAGGGCGG 120
consensus_9618#1      ------------------------------------------------------------
                                                                                  

consensus_9618#0      TAGCGGCGGCACATGGAGGGGGTGAACGGCGGGGCGGTGGAGGAGGAGAGGAAGCCGCTG 180
consensus_9618#1      ------------------------------------------------------------
                                                                                  

consensus_9618#0      TCGGAGGTGGTGGGCGACTGCGTGCAGCGCTGGTTCCAGGACGCGCTCAAGGAGGCCCGC 240
consensus_9618#1      ------------------------------------------------------------
                                                                                  

consensus_9618#0      CGCGGCGACTCCGCCATGCAGGTGCTCGTCGCGCAGATGTACCACTCCGGCTACGGCATC 300
consensus_9618#1      ------------------------------------------------------------
                                                                                  

consensus_9618#0      CCCAAGAACGAGCACAAGGGAAGAGCGTGGGCTGAGAAGGCATCTAGATACAGGCCTTCA 360
consensus_9618#1      ------------------------------------------------------------
                                                                                  

consensus_9618#0      GTCTGGAAAGTTGGCACAAAGCGTCCGGGATATAATGCCAGTGACTCAGATTCTGATGAA 420
consensus_9618#1      ------------------------------------------------------------
                                                                                  

consensus_9618#0      ATGAATGATGATGAGAAGCAATAACAATGAAAGAATCAATTGTGAGTTTAGATAGAAGAA 480
consensus_9618#1      ------------------------------------------------------------
                                                                                  

consensus_9618#0      TGGCAGGGTAATGATAAATCTGGTTGTCAAACCCTCGTCAATTTTACCAATTTGTGTGAG 540
consensus_9618#1      ------------------------------------------------------------
                                                                                  

consensus_9618#0      ATTGGGGCTTCTTTCGGCTGGAGTCTGCCATGTGAGCTATCAAGTAAATTTTGTAAAACC 600
consensus_9618#1      ------------------------------------------------------------
                                                                                  

consensus_9618#0      GTTTGGATACTTGGAACACACAATGTATTCAATATTGCCCCAAAAACAGAGGGAAAAATG 660
consensus_9618#1      ------------------------------------------------------------
                                                                                  

consensus_9618#0      TCAATTTAGTGGTGCTTGGTGCTTACAGGTTCATTATTTCAAACTTAGCTAGTTTGAGTC 720
consensus_9618#1      --AGAGGACGAGACAAGGGGGCTTACAGGTTCCCTATTTCAAACTAAACTAGTTTGAGTC 58
                        *    *   *     ** ************  *********** * ************

consensus_9618#0      CATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATT 780
consensus_9618#1      CATTTTATGGGTTCTTGCTTGCATATGCTTCAGGTTCCCCATGGTGAACAGTCTTGTATT 118
                      ************************************************************

consensus_9618#0      GGTTTATGGGCTAAATGGTTGT--CTGCCGAGTTACAACAAAAAATCTTTTCCTAAAAAA 838
consensus_9618#1      GGTTTATGGGCTAAATGGTTGTGTCTGCCGAGTTCCAACAAAAAAAA------AAAAAAA 172
                      **********************  ********** **********         ******