These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 566 fasta sequence [ACATACTACTTCGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGCCGGAGATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGGTCTAGGAAGAGGGACCGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCCGGAGGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCCTGTGGCGGCGGAA-CGGTGATTGTGTCGCGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCA-GCA-GCTGTGGCGGCCGACATTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAA-GCCAAGTAGTCC-ACCGGAGAAGAAGGTGGACAGCGCGCCTAATC-TCGATCTTAGCTTGTCAATGTGATTTTTTCTTTTC-TTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGA-TTTTCTATCAGGAGAAAGAAATCAAGTTCATACTAAGATTTGCTTAAAAA] [+] EMBL BI799557 [ACATACTACTTCGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGCCGGAGATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGGTCTAGGAAGAGGGACC GCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCCGGAGGGGGGTGACCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCCTGTGGCGGCGGAACCGGTGATTGTGTCGCGACC AGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCACGCACGCTGTGGCGGCCGACATTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAACGCCAAGTAGTCC ACCGGAGAAGAAGGTGGACAGCGCGCCTAATC TCGATCTTAGCTTGTCAATGTGATTTTTTCTTTTC TTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGA TTTTCTATCAGGAGAAAGAAATCAAGTTCATACTAAGATTTGCTTAAAAA] [+] EMBL C97842 [ CCCCTTTTCCACGCAACAGCAGCACCGCGNCGGAGATGATCGTAACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGA GTCTAGGAAGAGGGACCGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCCGNCGCC NTANCCGGAGGGGGGTGGCCATGGCCA GAAGAGGAGGCGCGGNACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAG CTGTGGCGNCGGAA CGGTGATTGTTTCGCGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCA GCA GCTGTGGCGGCCGACGTTTTTAATGGAGGACTTCGCGTTCGATTTGAAGGGAA GCCAAGTAGTCCAACCGGAGANGAAGGTGG CAGCGTGNCTAATCTTCGATCTTAG TTTTNAATGT ] [+] EMBL BI799563 [ GCAGCACCGCG CGGAGATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGGTCTAGGAAGAGGGACCGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTA CCGGAGGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCCTGTGGCGGCGGAA CGGTGATTGTGTCGCGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCA GCA GCTGTGGCGGCCGACATTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAA GCCAAGTAGTCCAACCGGAGAAGAAGGTGGACAGCGCGCCTAATC TCGATCTTAGCTTGTCAATGTGATTTTTTCTTTTC TTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGA TTTTCTATCAGGAGAAAGAAATCAAGTTCATACTAAGATTTGCTTAAAAA] [+] EMBL BI797925 [ CAAGTAGTCC ACCGGAGAAGAAGGTGGACAGCGCGCCTAATC TCGATCTTAGCTTGTCAATGTGATTTTTTCTTTTCTTTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGATTTTTCTATCAGGAGAAAGAAATCAAGTTCATACTAAGA TTGCT ] consensusID : consensus_9619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [CCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCGGAGGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTNTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCTGTGGCGGCGGAACGGTGATTGTGTCGCGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCAGCAGCTGTGGCGGCCGACGTTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAAGCCAAGTAGTCCAACCGGAGAAGAAGGTGGACAGCGCGCCTAATCTCGATCTTAGCTTGTCAATGTGATTTTTTTCTTTTCTTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGATTTTCTATCAGGAGAAAGAAATCAAGTTCATAAAAAAAAAAAA] [+] EMBL AU172408 [CCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCGGAGGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTNTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCTGTGGCGGCGGAACGGTGATTGTGTCGCGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCAGCAGCTGTGGCGGCCGACGTTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAAGCCAAGTAGTCCAACCGGAGAAGAAGGTGGACAGCGCGCCTAATCTCGATCTTAGCTTGTCAATGTGATTTTTTTCTTTTCTTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGATTTTCTATCAGGAGAAAGAAATCAAGTTCATAAAAAAAAAAAA] consensusID : consensus_9619#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [CACTCCACATACTATTTCGGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGNCGNAGATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGTCTAGGAAGAGGGACCGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCGNCCNNATCNCAGGANGGGANGTGGCCATGGCAGTAATGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCTGTGGCGACGGAACGGTGATTGTGTCGCGACCAAGNGACGAGCGTGGATGGTNGCCAGAAGAAGCAGGATCGCCAGCAGCTGTTGCGCCCGA] [+] EMBL C27949 [CACTCCACATACTATTTCGGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGNCGNAGATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGTCTAGGAAGAGGGACCGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCGNCCNNATCNCAGGANGGGANGTGGCCATGGCAGTAATGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCTGTGGCGACGGAACGGTGATTGTGTCGCGACCAAGNGACGAGCGTGGATGGTNGCCAGAAGAAGCAGGATCGCCAGCAGCTGTTGCGCCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9619#0 ------ACATACTACTTCGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGCCGGAG 54 consensus_9619#1 ------------------------------------------------------------ consensus_9619#2 CACTCCACATACTATTTCGGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGNCGNA 60 consensus_9619#0 ATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGGTCTAGGAAGAGGGAC 114 consensus_9619#1 ------------------------------------------------------------ consensus_9619#2 GATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGTCTAGGAAGAGGGAC 120 consensus_9619#0 CGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCCGGA 174 consensus_9619#1 ---------------CCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACC-GGA 44 consensus_9619#2 CGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGC-GNCCNNATCNCAGGAN 179 **************************** * * * * consensus_9619#0 GGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGC 234 consensus_9619#1 GGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTNTACGC 104 consensus_9619#2 GGGANGTGGCCATGGCAGTAATGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGC 239 *** *********** * ******************************** ***** consensus_9619#0 GCTGCTCGACGAGGTCAGGGAGATGAGGGAGCCTGTGGCGGCGGAACGGTGATTGTGTCG 294 consensus_9619#1 GCTGCTCGACGAGGTCAGGGAGATGAGGGAGC-TGTGGCGGCGGAACGGTGATTGTGTCG 163 consensus_9619#2 GCTGCTCGACGAGGTCAGGGAGATGAGGGAGC-TGTGGCGACGGAACGGTGATTGTGTCG 298 ******************************** ******* ******************* consensus_9619#0 CGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCAGCAGCTGTGGC 354 consensus_9619#1 CGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCAGCAGCTGTGGC 223 consensus_9619#2 CGACCAAGNG-ACGAGCGTGGATGGTNGCCAGAAGAAGCAGGATCGCCAGCAGCTGTTGC 357 ******** * *************** ****************************** ** consensus_9619#0 GGCCGACATTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAAGCCAAGTAGTCCA-C 413 consensus_9619#1 GGCCGACGTTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAAGCCAAGTAGTCCAAC 283 consensus_9619#2 GCCCGA------------------------------------------------------ 363 * **** consensus_9619#0 CGGAGAAGAAGGTGGACAGCGCGCCTAATCTCGATCTTAGCTTGTCAATGTGATTTTTT- 472 consensus_9619#1 CGGAGAAGAAGGTGGACAGCGCGCCTAATCTCGATCTTAGCTTGTCAATGTGATTTTTTT 343 consensus_9619#2 ------------------------------------------------------------ consensus_9619#0 CTTTTCTTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGATTTTCTATCAGGAGAA 532 consensus_9619#1 CTTTTCTTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGATTTTCTATCAGGAGAA 403 consensus_9619#2 ------------------------------------------------------------ consensus_9619#0 AGAAATCAAGTTCATACTAAGATTTGCTTAAAAA 566 consensus_9619#1 AGAAATCAAGTTCATAAAAAAA-------AAAAA 430 consensus_9619#2 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||