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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2108 fasta sequence
[CACACGTACTTATACCTCCGCCGCTTCTTCCTCTTCCCTCCCATTTCGCGCATTTGCAAGAATGCGTCGTTGAGCTTAGCGGGTGAGGTGGTCGGAGGCATGGGAGAAGAGGCGGCGACGGCGGCGGCGGCGGAGCGAGATGAGCAGGGGAGTGTCACGGCGGCGCTCGACGCCATTACCGGTTTGGTGTCTGCCTCCTTGGCCGCTTCGCTCTTCCCGTACAAGTGGCAGCTCATCAGGGACAGGCTCAACCGGCTCCACGCCGGCCTCGCCGACATAGCCACCGGCGGCGGTGAAGGCGGCGAGGGGCATGGGGC-GTTGGCGGGGGTTCTTGGGGCGGTGGTGGAGACGGCGAGGGAGGC-GTCGGAGCTGGTGCCGAGGAGCCAGGGGAGGCACTACGGGGGAGGGAAGCTGCGGCTGCGGAGCGACCTCGACGTCGTGGCGGGCACGCTCGACGCGCTCGTGGCGCGGGTGGACGAGGTGTACGCGTCGGGCGCGCTGACGCGGGCGCGGGCGCTCGTCGTGTCGAGGCCCTGCGCCGGCGCCAGCCGCGACGACGTGCGGTTCTACGTGCGGGACCTGTTCGCGAGGCTCAGGGTGGGCGGCGCCGAGATGCGGGGGGAGGCCGCCGCCGCGCTCGCCGAGGTGCTGCACGACGACGAGAAGTGCGTCCGCGTCGTCGTGTCCGACGTCGCAGACGGCGTCTGCGTCCTCGTCTGGCTGCTCGAGTGCCCCGACGCCTGCGTCCAGGAGGAGGTCCTGGAGGCCGTCTCCGTGATCGCCGGGTTTGAGGCTTACAGAGGCGACCTTGTCGTCGGCGGCGTCATCGCTCCGGTGATCCGTGTCCTCGACAGTGCCGGGGACAGGCCCTCGGCGAAGGAGCGGGCGGCGCGGTTGCTGTGCAAGCTCACCGAGAACTCCGACAACGCGTGGGCCGTCGCCGCGCACGGCGGCGTCACGGCATTGCTCAACGTCTGCGCCGACTACACCGCCAGCGGCGGCGAGCTCGTGTGCGCGGCTTGCCGTGTGCTGAGGAGCCTCGCCGGCGTCGACGAGATCAGAAAGTACATGGTGGCCGAGGCCGGCGCGGCTCCGGTGCTCGTGTCGCTCTGCCGGGGCGCCGCGGACGAGGCGGCGCAAATCCAGGCGATGGAGCTCCTCGCCGCCATCGCCTCCGGCGACAGCTCCGTCAGGGAGGCCGTGCTCCAGGAAGGCGCCGTCGAGTCCCTGGTCAGCGTGCTCGACCCGGCCTCCCCGCGCTCCTCCAAGGCGCGGGAGGTCGCGCTCCGCGCCATCGACGCGCTCTGCCTCTCCTCCCCACCCTTGACATCCCGGCTCGTCGCCGCCGGCTTCCTCGACCGCGTCCTCGTCTTCCTCCGCAGCGGCGACGCCACGCTGCAGCACTGCGCCCTGAAGGCGGCGCACCGGCTATGCCACGCCTCGGAGGACACCAAGAAGGCCATGGGCGACGCCGGGTTCATGCCGGAGCTCGTGAGCATCCTCCACGCCGCCAAGTCGCTCGAGGCGCGGGACATGGCGGCGGAGGCGCTCTGCGCCATGGTGTCCGTGCACCGCAACCGGAAGCGGTTCGTCCAGGAAGACCGCAACGTGGCGCAGGTACTGCAGCTGCTTGGCCCCGACGACGAGAAGCTCTCGCCGGCGAAGCGCTTCTTGCTCTCCACCCTGATGCACCTCAGCGACAGCACCTCCGGCCGCCGGAAGATCATGTCATCGGAGCATCTCAGGAATCTCGAGAGGCTAGCAGAGACGAACGTGACGGACGCCAAGAAGATCGTGAAGAAGCTTGGCGGGAGCAAGCTCAGGAACATCTTCCATGGCATCTGGAGCCTGCAGAAAGCTTGACGACGACAAGAACCAGCTCACCGCTAGTACTATACTACTGCTCGTATGGCCTTAGCTAACACACATGTTCGCCTCATGTTTTTTTGTAACCGTGAATGGACGAATCAATCCCAAGTGTATTCTACTACTCCACTCGATGATGAATTCTTGATACTCAGAGAACTCATCACTCATCCTCTGTGTATACTAGCTCATCTCATCCGTGTCAAATAAAAGTAC--AAAAAAAAAATCCATAAAAGAGCGGC]
[+] EMBL AK101241 [CACACGTACTTATACCTCCGCCGCTTCTTCCTCTTCCCTCCCATTTCGCGCATTTGCAAGAATGCGTCGTTGAGCTTAGCGGGTGAGGTGGTCGGAGGCATGGGAGAAGAGGCGGCGACGGCGGCGGCGGCGGAGCGAGATGAGCAGGGGAGTGTCACGGCGGCGCTCGACGCCATTACCGGTTTGGTGTCTGCCTCCTTGGCCGCTTCGCTCTTCCCGTACAAGTGGCAGCTCATCAGGGACAGGCTCAACCGGCTCCACGCCGGCCTCGCCGACATAGCCACCGGCGGCGGTGAAGGCGGCGAGGGGCATGGGGC GTTGGCGGGGGTTCTTGGGGCGGTGGTGGAGACGGCGAGGGAGGC GTCGGAGCTGGTGCCGAGGAGCCAGGGGAGGCACTACGGGGGAGGGAAGCTGCGGCTGCGGAGCGACCTCGACGTCGTGGCGGGCACGCTCGACGCGCTCGTGGCGCGGGTGGACGAGGTGTACGCGTCGGGCGCGCTGACGCGGGCGCGGGCGCTCGTCGTGTCGAGGCCCTGCGCCGGCGCCAGCCGCGACGACGTGCGGTTCTACGTGCGGGACCTGTTCGCGAGGCTCAGGGTGGGCGGCGCCGAGATGCGGGGGGAGGCCGCCGCCGCGCTCGCCGAGGTGCTGCACGACGACGAGAAGTGCGTCCGCGTCGTCGTGTCCGACGTCGCAGACGGCGTCTGCGTCCTCGTCTGGCTGCTCGAGTGCCCCGACGCCTGCGTCCAGGAGGAGGTCCTGGAGGCCGTCTCCGTGATCGCCGGGTTTGAGGCTTACAGAGGCGACCTTGTCGTCGGCGGCGTCATCGCTCCGGTGATCCGTGTCCTCGACAGTGCCGGGGACAGGCCCTCGGCGAAGGAGCGGGCGGCGCGGTTGCTGTGCAAGCTCACCGAGAACTCCGACAACGCGTGGGCCGTCGCCGCGCACGGCGGCGTCACGGCATTGCTCAACGTCTGCGCCGACTACACCGCCAGCGGCGGCGAGCTCGTGTGCGCGGCTTGCCGTGTGCTGAGGAGCCTCGCCGGCGTCGACGAGATCAGAAAGTACATGGTGGCCGAGGCCGGCGCGGCTCCGGTGCTCGTGTCGCTCTGCCGGGGCGCCGCGGACGAGGCGGCGCAAATCCAGGCGATGGAGCTCCTCGCCGCCATCGCCTCCGGCGACAGCTCCGTCAGGGAGGCCGTGCTCCAGGAAGGCGCCGTCGAGTCCCTGGTCAGCGTGCTCGACCCGGCCTCCCCGCGCTCCTCCAAGGCGCGGGAGGTCGCGCTCCGCGCCATCGACGCGCTCTGCCTCTCCTCCCCACCCTTGACATCCCGGCTCGTCGCCGCCGGCTTCCTCGACCGCGTCCTCGTCTTCCTCCGCAGCGGCGACGCCACGCTGCAGCACTGCGCCCTGAAGGCGGCGCACCGGCTATGCCACGCCTCGGAGGACACCAAGAAGGCCATGGGCGACGCCGGGTTCATGCCGGAGCTCGTGAGCATCCTCCACGCCGCCAAGTCGCTCGAGGCGCGGGACATGGCGGCGGAGGCGCTCTGCGCCATGGTGTCCGTGCACCGCAACCGGAAGCGGTTCGTCCAGGAAGACCGCAACGTGGCGCAGGTACTGCAGCTGCTTGGCCCCGACGACGAGAAGCTCTCGCCGGCGAAGCGCTTCTTGCTCTCCACCCTGATGCACCTCAGCGACAGCACCTCCGGCCGCCGGAAGATCATGTCATCGGAGCATCTCAGGAATCTCGAGAGGCTAGCAGAGACGAACGTGACGGACGCCAAGAAGATCGTGAAGAAGCTTGGCGGGAGCAAGCTCAGGAACATCTTCCATGGCATCTGGAGCCTGCAGAAAGCTTGACGACGACAAGAACCAGCTCACCGCTAGTACTATACTACTGCTCGTATGGCCTTAGCTAACACACATGTTCGCCTCATGTTTTTTTGTAACCGTGAATGGACGAATCAATCCCAAGTGTATTCTACTACTCCACTCGATGATGAATTCTTGATACTCAGAGAACTCATCACTCATCCTCTGTGTATACTAGCTCATCTCATCCGTGTCAAATAAAAGTAC AAAAAAAAAATCCAT ]
[+] EMBL AU172840 [ AAGAATGCGTCGTTGAGCTTAGCGGGTGAGGTGGTCGGAGGCATGGGAGAAGAGGCGGCGACGGCGGCGGCGGCGGAGCGAGATGAGCAGGGGAGTGTCACGGCGGCCCTCGACGCCATTACCGGTTTGGTGTCTNTTTTNTTGGCCGTTTCGCTCTTCCCGTACAAGTGGCAGCTCATCAGGGACAGGCTCAACCGGNTCCACGCCGNCCTCGCCGACATAGCCACCGGCGGCGGTGAAGGCGGCAAGGGGCATGGGGCAGTTGGCGGGGGTTCTTGGGGCGGTGGTGGAGACGGCNAGGGAGGCATTCGNAGCTGGTGCCGAGGACCCAGGGGAGGCACTACGGGGGAG ]
[+] EMBL C91800 [ GCAGGGGAGTGTCACGGCGGCGCTCGACG CATTACCGGTTTGGTGTCTGCCTCCTTGGCCGCTTCGCTCTTCCCGTACAAGTNGCAGCTCATCAGGGACAGGCTCAACCGGCTCCACGCCGGCCTCGCCGACATAGCCACCGGCGGCGGTGAAGGCGGCGAGGGGCATGGGGC GTTGGCGGGGGTTCTTGGGGCGGTGGTGGAGACGGCGAGGGAGGC GTCGGAGCTGGTGCCGAGGAGCCAGGGGANGCA ]
[+] EMBL AU172857 [ GCACCTCAGCGNCAGCACCTCCGGCCGCCGGAAGATCATGTCATCGGAGCATCTCAGGAATCTCGAGAGGCTAGCAGAGACGAACGTGACGGACGCCAANAAGATCGTGAAGAAGCTTGGCGGGAGCAAGCTCAGGAACATCTTCCATGGCATCTGGAGCCTGCAGAAAGCTTGACGACGACAAGAACCAGCTCACCGCTAGTACTATACTACTGCTCGTATGGCCTTAGCTAACACACATGTTCGCCTCATGTTTTTTTGTAACCGTGAATGGACGAATCAATCCCAAGTGTATTCTACTACTCCACTCGATGATGAATTCTTGATACTCAGAGAACTCATCACTCATCCTCTGTGTATACTAGCTCATCTCATCCGTGTCAAATAAAAGTAC AAAAAAAAAATCCAAAAAA ]
[-] EMBL AU225673 [ ccgctCACACATGTTCGCCTCATGTTTTTTTGTAACCGTGAATGGACGAATCAATCCCAAGTGTATTCTACTACTCCACTCGATGATGAATTCTTGATACTCAGAGAACTCATCACTCATCCTCTGTGTATACTAGCTCATCTCATCCGTATCAAATAAAAGTACAAAAAAAAAAAATCCATTCGAGAGCGGC]
consensusID : consensus_9625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence
[CCCGCTAGTACTANACTACTGCTCGTATGGCCTTAGCTAACACACATGTTCGCCTCATGTTTTTTTGTAACCGTGAATGGNCGAATCAATCCCAAGTGTATTCTACTACTCCACTCGATGATGAATTCTTGATACTCANAGAACTCATCACTCATCCTCTGTGTANACTAGCTCATCTCATCCGTGTCAAATAAAAGNACAAAAAAAAATCCATTCGAGNAAGCCAAAAAAAAAAAAAAAAA]
[+] EMBL AU172841 [CCCGCTAGTACTANACTACTGCTCGTATGGCCTTAGCTAACACACATGTTCGCCTCATGTTTTTTTGTAACCGTGAATGGNCGAATCAATCCCAAGTGTATTCTACTACTCCACTCGATGATGAATTCTTGATACTCANAGAACTCATCACTCATCCTCTGTGTANACTAGCTCATCTCATCCGTGTCAAATAAAAGNACAAAAAAAAATCCATTCGAGNAAGCCAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9625#0 CACACGTACTTATACCTCCGCCGCTTCTTCCTCTTCCCTCCCATTTCGCGCATTTGCAAG 60
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 AATGCGTCGTTGAGCTTAGCGGGTGAGGTGGTCGGAGGCATGGGAGAAGAGGCGGCGACG 120
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GCGGCGGCGGCGGAGCGAGATGAGCAGGGGAGTGTCACGGCGGCGCTCGACGCCATTACC 180
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GGTTTGGTGTCTGCCTCCTTGGCCGCTTCGCTCTTCCCGTACAAGTGGCAGCTCATCAGG 240
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GACAGGCTCAACCGGCTCCACGCCGGCCTCGCCGACATAGCCACCGGCGGCGGTGAAGGC 300
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GGCGAGGGGCATGGGGCGTTGGCGGGGGTTCTTGGGGCGGTGGTGGAGACGGCGAGGGAG 360
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GCGTCGGAGCTGGTGCCGAGGAGCCAGGGGAGGCACTACGGGGGAGGGAAGCTGCGGCTG 420
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 CGGAGCGACCTCGACGTCGTGGCGGGCACGCTCGACGCGCTCGTGGCGCGGGTGGACGAG 480
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GTGTACGCGTCGGGCGCGCTGACGCGGGCGCGGGCGCTCGTCGTGTCGAGGCCCTGCGCC 540
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GGCGCCAGCCGCGACGACGTGCGGTTCTACGTGCGGGACCTGTTCGCGAGGCTCAGGGTG 600
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GGCGGCGCCGAGATGCGGGGGGAGGCCGCCGCCGCGCTCGCCGAGGTGCTGCACGACGAC 660
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GAGAAGTGCGTCCGCGTCGTCGTGTCCGACGTCGCAGACGGCGTCTGCGTCCTCGTCTGG 720
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 CTGCTCGAGTGCCCCGACGCCTGCGTCCAGGAGGAGGTCCTGGAGGCCGTCTCCGTGATC 780
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GCCGGGTTTGAGGCTTACAGAGGCGACCTTGTCGTCGGCGGCGTCATCGCTCCGGTGATC 840
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 CGTGTCCTCGACAGTGCCGGGGACAGGCCCTCGGCGAAGGAGCGGGCGGCGCGGTTGCTG 900
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 TGCAAGCTCACCGAGAACTCCGACAACGCGTGGGCCGTCGCCGCGCACGGCGGCGTCACG 960
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GCATTGCTCAACGTCTGCGCCGACTACACCGCCAGCGGCGGCGAGCTCGTGTGCGCGGCT 1020
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 TGCCGTGTGCTGAGGAGCCTCGCCGGCGTCGACGAGATCAGAAAGTACATGGTGGCCGAG 1080
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GCCGGCGCGGCTCCGGTGCTCGTGTCGCTCTGCCGGGGCGCCGCGGACGAGGCGGCGCAA 1140
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 ATCCAGGCGATGGAGCTCCTCGCCGCCATCGCCTCCGGCGACAGCTCCGTCAGGGAGGCC 1200
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GTGCTCCAGGAAGGCGCCGTCGAGTCCCTGGTCAGCGTGCTCGACCCGGCCTCCCCGCGC 1260
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 TCCTCCAAGGCGCGGGAGGTCGCGCTCCGCGCCATCGACGCGCTCTGCCTCTCCTCCCCA 1320
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 CCCTTGACATCCCGGCTCGTCGCCGCCGGCTTCCTCGACCGCGTCCTCGTCTTCCTCCGC 1380
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 AGCGGCGACGCCACGCTGCAGCACTGCGCCCTGAAGGCGGCGCACCGGCTATGCCACGCC 1440
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 TCGGAGGACACCAAGAAGGCCATGGGCGACGCCGGGTTCATGCCGGAGCTCGTGAGCATC 1500
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 CTCCACGCCGCCAAGTCGCTCGAGGCGCGGGACATGGCGGCGGAGGCGCTCTGCGCCATG 1560
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 GTGTCCGTGCACCGCAACCGGAAGCGGTTCGTCCAGGAAGACCGCAACGTGGCGCAGGTA 1620
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 CTGCAGCTGCTTGGCCCCGACGACGAGAAGCTCTCGCCGGCGAAGCGCTTCTTGCTCTCC 1680
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 ACCCTGATGCACCTCAGCGACAGCACCTCCGGCCGCCGGAAGATCATGTCATCGGAGCAT 1740
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 CTCAGGAATCTCGAGAGGCTAGCAGAGACGAACGTGACGGACGCCAAGAAGATCGTGAAG 1800
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 AAGCTTGGCGGGAGCAAGCTCAGGAACATCTTCCATGGCATCTGGAGCCTGCAGAAAGCT 1860
consensus_9625#1 ------------------------------------------------------------
consensus_9625#0 TGACGACGACAAGAACCAGCTCACCGCTAGTACTATACTACTGCTCGTATGGCCTTAGCT 1920
consensus_9625#1 ----------------------CCCGCTAGTACTANACTACTGCTCGTATGGCCTTAGCT 38
************ ************************
consensus_9625#0 AACACACATGTTCGCCTCATGTTTTTTTGTAACCGTGAATGGACGAATCAATCCCAAGTG 1980
consensus_9625#1 AACACACATGTTCGCCTCATGTTTTTTTGTAACCGTGAATGGNCGAATCAATCCCAAGTG 98
****************************************** *****************
consensus_9625#0 TATTCTACTACTCCACTCGATGATGAATTCTTGATACTCAGAGAACTCATCACTCATCCT 2040
consensus_9625#1 TATTCTACTACTCCACTCGATGATGAATTCTTGATACTCANAGAACTCATCACTCATCCT 158
**************************************** *******************
consensus_9625#0 CTGTGTATACTAGCTCATCTCATCCGTGTCAAATAAAAGTACAAAAAAAAAATCCATAAA 2100
consensus_9625#1 CTGTGTANACTAGCTCATCTCATCCGTGTCAAATAAAAGNACAAAAAAAAA-TCCATTCG 217
******* ******************************* *********** *****
consensus_9625#0 AGAGCGGC----------------- 2108
consensus_9625#1 AGNAAGCCAAAAAAAAAAAAAAAAA 242
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||