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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1517 fasta sequence
[AATTATTAATTTACTTTTGACCATTACTAATTAGCCATTACAATCCAGCAAAACTAAGTCGGCAGGCAGCAGATAAATTAAACCACGCGCGCGCGGTATACACTTGTGAACACGTACGTAGGCGGGAAAGAAGAAGGAAAACGCAACAAAATTAATGGAGCATCCAACTAAGTTGATTTCGCCTAAACTAAAGCTGCATCTACTATTACTAGCTGCTAATTAACAACGCACTAACTATAATAAACATGCTAAGTGGACTAGCTAGCTAAGCTAAGCTACTACAGTACTCCTCTCCCACTTGACCACCTCAGCTTCCTCCTCCTTTCTCATACTAAGAAAGAATTCAGAGTCAAATTTCTCAGCCACCTCGCCTATATATACATCCCATGCCTAGCTTAATTCCATCATCCATCATCACACAGCTCACTGACCAGCAGCTCAGCCTCATCACTCACGAGCAATCAGCTAGCTAGCTTAGCTTGATCACTACACCTCCATAGATCTTAGCTTAATTAGCTTAGATTATACAAGTGGTCAAGTCAAGAACTGTACCAATGGCATCATCAATGGCGCCTGCAGCAGCAATGGCGATCCTCCTCCTGGCGCTTCTCATGCCCGCCACGCTGTGCTCCCGCTCAGGGCCGCCCTCGTCCAAGCACGGCCACGGCGGCCACGCCAAGCGCGCGCCGCCGCCGGCGTCGCCCGTGGTGCCGGTGGCGCCTCAGGCCGCGGCGCTGGTGCGCGCCACCTGCAACTCCACCGCCTACTACGACGTGTGCGTGTCGGCGCTCGCCGCCGACCCGTCGAGCACCACGGCCGACGTGCGCGGGCTCTCCGCCATCGCCGTGTCCGTGGCCGCGGCGAACGCGTCCGGCGCGGCGCAGGCGGCGGCGGCGCTGGCCAACGGCACGGCGCCCCTCGCCGCCGCTGCCGCCGGCGACGGCACCGTGCAGGCGCTGCTCCGCGCGTGCGCCGGCAAGTACGGCGACGCGCGCGACGCGCTGGCGGCGGCGAAGGAGTCGATGGGGCAGCA-GGACTACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATACCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACGTATAAATACGGTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTACTAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTCACTTTGGCTCCAGTATAATTAGTCACTATTCATTTTTGTTGAATTAAAATGATCTGAATATGTGCCCCCCCTGGTTTT]
[+] EMBL CB682017 [AATTATTAATTTACTTTTGACCATTACTAATTAGCCATTACAATCCAGCAAAACTAAGTCGGCAGGCAGCAGATAAATTAAACCACGCGCGCGCGGTATACACTTGTGAACACGTACGTAGGCGGGAAAGAAGAAGGAAAACGCAACAAAATTAATGGAGCATCCAACTAAGTTGATTTCGCCTAAACTAAAGCTGCATCTACTATTACTAGCTGCTAATTAACAACGCACTAACTATAATAAACATGCTAAGTGGACTAGCTAGCTAAGCTAAGCTACTACAGTACTCCTCTCCCACTTGACCACCTCAGCTTCCTCCTCCTTTCTCATACTAAGAAAGAATTCAGAGTCAAATTTCTCAGCCACCTCGCCTATATATACATCCCATGCCTAGCTTAATTCCATCATCCATCATCACACAGCTCACTGACCAGCAGCTCAGCCTCATCACTCACGAGCAATCAGCTAGCTAGCTTAGCTTGATCACTACACCTCCATAGATCTTAGCTTAATTAGCTTAGATTATACAAGTGGTCAAGTCAAGAACTGTACCAATGGCATCATCAATGGCGCCTGCAGCAGCAATGGCGATCCTCCTCCTGGCGCTTCTCATGCCCGCCACGCTGTGCTCCCGCTCAGGGCCGCCCTCGTCCAAGCACGGCCACGGCGGCCACGCCAAGCGCGCGCCGCCGCCGGCGTCGCCCGTGGTGCCGGTGGCGCCTCAGGCCGCGGCGCTGGTGCGCGCCACCTGCAACTCCACCGCCTACTACGACGTGTGC ]
[+] EMBL AK070037 [ TCATCACACAGCTCACTGACCAGCAGCTCAGCCTCATCACTCACGAGCAATCAGCTAGCTAGCTTAGCTTGATCACTACACCTCCATAGATCTTAGCTTAATTAGCTTAGATTATACAAGTGGTCAAGTCAAGAACTGTACCAATGGCATCATCAATGGCGCCTGCAGCAGCAATGGCGATCCTCCTCCTGGCGCTTCTCATGCCCGCCACGCTGTGCTCCCGCTCAGGGCCGCCCTCGTCCAAGCACGGCCACGGCGGCCACGCCAAGCGCGCGCCGCCGCCGGCGTCGCCCGTGGTGCCGGTGGCGCCTCAGGCCGCGGCGCTGGTGCGCGCCACCTGCAACTCCACCGCCTACTACGACGTGTGCGTGTCGGCGCTCGCCGCCGACCCGTCGAGCACCACGGCCGACGTGCGCGGGCTCTCCGCCATCGCCGTGTCCGTGGCCGCGGCGAACGCGTCCGGCGCGGCGCAGGCGGCGGCGGCGCTGGCCAACGGCACGGCGCCCCTCGCCGCCGCTGCCGCCGGCGACGGCACCGTGCAGGCGCTGCTCCGCGCGTGCGCCGGCAAGTACGGCGACGCGCGCGACGCGCTGGCGGCGGCGAAGGAGTCGATGGGGCAGCA GGACTACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATACCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGTTCCGTCGCGCTCGACATCATCGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACGTATAAATACGGTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTC ]
[+] EMBL AU173001 [ AGCTCAGCCTCATCACTCACGAGCAATCAGCTAGCTAGCTTAGCTTGATCACTACACCTCCATAGATCTTAGCTTAATTAGCTTAGATTATACAAGTGGTCAAGTCAAGAACTGTACCAATGGCATCATCAATGGCGCCTGCAGCAGCAATGGCGATCCTCCTCCTGGCGCTTCTCATGCCCGCCACGCTGTGCTCCCGCTCAGGGCCGCCCTCGTCCAAGCACGGCCACGGCGGCCACGCCAAGCGCGCGCCGCCGCCGGCGTCGCCCGTGGTGCCGGTGGCGCCTCAGGCCGCGGCGCTGGTGCGCGCCACCTGCAACTCCACCGCCTACTACGACGTGTGCGTGTCGGCGCTCGCCGCCGACCCGTCGAGCACCACGGCCGACGTGCGCGGGCTCTCCGCCATCGCCGTGTCCGTGGCCGCGG ]
[-] EMBL CB682016 [ GTCGGCGCTCGCCGCCGACCCGTCGAGCACCACGGCCGACGTGCGCGGGCTCTCCGCCATCGCCGTGTCCGTGGCCGCGGCGAACGCGTCCGGCGCGGCGCAGGCGGCGGCGGCGCTGGCCAACGGCACGGCGCCCCTCGCCGCCGCTGCCGCCGGCGACGGCACCGTGCAGGCGCTGCTCCGCGCGTGCGCCGGCAAGTACGGCGACGCGCGCGACGCGCTGGCGGCGGCGAAGGAGTCGATGGGGCAGCA GGACTACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATACCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACGTATAAATACGGTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTACTAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTCACTTTGGCTCCAGTATAATTAGTCACTATTCATTTTTGTTGAATTAAAATGATCTGAATATGTGCCCCCCCTGGTTTT]
[+] EMBL AU184044 [ nATGGGGCAGCAGGGANTACGACCTGGNGACGGTGCACGTGAGCGCCGGCGCCGAATACCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACGTATAAATACGGTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTACTAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTCAaaaa ]
consensusID : consensus_9626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[GGGCAGCAGGACNACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATATCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACNGTATAAATACGGTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTACTAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTAAAAAAAAAAAAAAAAA]
[+] EMBL AU173002 [GGGCAGCAGGACNACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATATCCGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGGCGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCCTCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACNGTATAAATACGGTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGGTAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTACTAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9626#0 AATTATTAATTTACTTTTGACCATTACTAATTAGCCATTACAATCCAGCAAAACTAAGTC 60
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 GGCAGGCAGCAGATAAATTAAACCACGCGCGCGCGGTATACACTTGTGAACACGTACGTA 120
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 GGCGGGAAAGAAGAAGGAAAACGCAACAAAATTAATGGAGCATCCAACTAAGTTGATTTC 180
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 GCCTAAACTAAAGCTGCATCTACTATTACTAGCTGCTAATTAACAACGCACTAACTATAA 240
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 TAAACATGCTAAGTGGACTAGCTAGCTAAGCTAAGCTACTACAGTACTCCTCTCCCACTT 300
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 GACCACCTCAGCTTCCTCCTCCTTTCTCATACTAAGAAAGAATTCAGAGTCAAATTTCTC 360
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 AGCCACCTCGCCTATATATACATCCCATGCCTAGCTTAATTCCATCATCCATCATCACAC 420
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 AGCTCACTGACCAGCAGCTCAGCCTCATCACTCACGAGCAATCAGCTAGCTAGCTTAGCT 480
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 TGATCACTACACCTCCATAGATCTTAGCTTAATTAGCTTAGATTATACAAGTGGTCAAGT 540
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 CAAGAACTGTACCAATGGCATCATCAATGGCGCCTGCAGCAGCAATGGCGATCCTCCTCC 600
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 TGGCGCTTCTCATGCCCGCCACGCTGTGCTCCCGCTCAGGGCCGCCCTCGTCCAAGCACG 660
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 GCCACGGCGGCCACGCCAAGCGCGCGCCGCCGCCGGCGTCGCCCGTGGTGCCGGTGGCGC 720
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 CTCAGGCCGCGGCGCTGGTGCGCGCCACCTGCAACTCCACCGCCTACTACGACGTGTGCG 780
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 TGTCGGCGCTCGCCGCCGACCCGTCGAGCACCACGGCCGACGTGCGCGGGCTCTCCGCCA 840
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 TCGCCGTGTCCGTGGCCGCGGCGAACGCGTCCGGCGCGGCGCAGGCGGCGGCGGCGCTGG 900
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 CCAACGGCACGGCGCCCCTCGCCGCCGCTGCCGCCGGCGACGGCACCGTGCAGGCGCTGC 960
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 TCCGCGCGTGCGCCGGCAAGTACGGCGACGCGCGCGACGCGCTGGCGGCGGCGAAGGAGT 1020
consensus_9626#1 ------------------------------------------------------------
consensus_9626#0 CGATGGGGCAGCAGGACTACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATACC 1080
consensus_9626#1 -----GGGCAGCAGGACNACGACCTGGCGACGGTGCACGTGAGCGCCGGCGCCGAATATC 55
************ **************************************** *
consensus_9626#0 CGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGG 1140
consensus_9626#1 CGCAGGTGTGCAAGGCGCTGTTCCGGCGGCAGAGGCCCGGGGCGTACCCGGCGGAGCTGG 115
************************************************************
consensus_9626#0 CGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCC 1200
consensus_9626#1 CGGCGAGGGAGGAGGCGCTCAACAAGCTCTGCTCCGTCGCGCTCGACATCATCGCCCTCC 175
************************************************************
consensus_9626#0 TCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACG-TATAAATACG 1259
consensus_9626#1 TCACCTCCTCTCCTGCATCCAACAACAACAACAGCTAGAGCTAGATACNGTATAAATACG 235
************************************************ **********
consensus_9626#0 GTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGG 1319
consensus_9626#1 GTATAATACTACTAGTACTGCATGCGTACGTGCTAAATACGTGTAATGACATGTATTTGG 295
************************************************************
consensus_9626#0 TAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTAC 1379
consensus_9626#1 TAGTAACTAGTTAATCCTGTGTGGTGCTGAGTGAGGATATATATGTTCTTCTTGTATTAC 355
************************************************************
consensus_9626#0 TAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTC 1439
consensus_9626#1 TAAGTATAGATGAGTTAATTACTGCCGTGCTGAAGCTTAGCATGCTGCATCTTGTACTTA 415
***********************************************************
consensus_9626#0 ACTTTGGCTCCAGTATAATTAGTCACTATTCATTTTTGTTGAATTAAAATGATCTGAATA 1499
consensus_9626#1 AAAAAAAAAAAAAAAA-------------------------------------------- 431
* * *
consensus_9626#0 TGTGCCCCCCCTGGTTTT 1517
consensus_9626#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||