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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9632#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1539 fasta sequence
[CGTTTTCTTCTTCTCTCACAGAGACGACTCCTCGCTCTCGTTGTCAAGCAGAGGGAGGTTACGAAGAGCGCCGTTGAGGCGGCTGTAATGGTGGACGTGGACAGCAGGATGGCCGGGCTCGCCCACCCGGCGGCGCACGCGGCGGGGCTGCCACTCCTGTCCACGCGCGCCGCCGCGGGGCCACCGTCGGCGTCGGCCTCGCCGCGCCACGGGTTGCACTCTTTTGACGGCGTGGCGGCGGCCGTGCTGTCACGTCTTCGGAAGACCGGGGTGGTCGTTCTTCCCGGGCTCTCCGACGCGGAGTTCGCCCGCTTGGAGGCGGAGATGGGGTTCACGTTCCCGCCTGACCTCCGCGCCGTGCTGGCGATGGGGCTCCCGTCGGGGGCTGGGTTCCCGGACTGGCGCGGACGGGCGTGGCTCCGCGCGGCGTTCGACCTGCCCATCGCGGCGGCCTCCCTGCAAATCGCGAAGGGTGCGCTGTGGCCGCGGTGCTGGGG-GCGGAGGCCGTCGGACCCCGACCGAGCGCGGCGGTTAGC-GCGGTCCGCCATCAGGCGCGCGCCGCTGCTCGTGCCGCTGTTCGACCGGTGCTACCTTCCCTGCCGCCCCTGTCTCGCCGGGAACCCCATGTTCTTCATCACCGACGACCGCGTGCTCTGCTGCGGCCTCGACATCCTCCATTTCTTCACCCGCGAGTCCTCGTTCCAGCCGCTGGACGTGTCCTCCCCGTCGGCGACGCCCTCCTCCGGCATTTGCACGCCGCACACGCGACGCAGCCTCGACGCCGTCTGCGGCGGCCAGGCGCTGCGCTGGATCGAGTTCTGGAGCGACGCGGCCTCCGACCGACGCCGCCGCGTCTCATCGTCCTCGGAAGCCTCCACCGCCTCCTCATCGTCGTCCTCCTCAGGCTGCCCTTCGCCACCTCCGAGGTCGACCCCGCTCTGGGTCGACAACTACCTCGACAAGCTCGGATCGGTGCTCAAGAAAGGTGGCTGGAGGGACAGAGAGGTCGACGAGATGGTCGAGGTCACCGCCTCCGGACTGTTCGACGGCGAGGAGGCACCCCCAGCCGACGCCGACGCGGTGCTCGACGCGCTGTTCCTAAAAACGGACCGGTGCTCGGACTCACTCCGGCGAGCAGGGTGGACCTCCGAGGACGTCTCGGATGCGTTCGGGCTTGACCTCCGTCGGCGAAAGGAGCAGCCGCGGCCAGCCGTGCAGATACCGCCGGAGATCGCCGCCAAGGTCCAGCGCCTCGCGCAAGCGGTGGCGAGGCCGTGACCTCACCGGGCACCGGCCGAACATGTGGGGCCCTGCCGTTTCTTCCTCGTCTCTGCGTTTTTTTCCCCGCATAGGAGGAATTAAACAACACTTATGTCAAGTGAAAAGTAAACTAGCCCATGTTCGTGTGCATGAATACACAAGTAAATTAAGATGTGTTCATGTGCACAATGAACCGTTAATTGTAAGACACGGTCTCCCAGAAATGAAAACTGCATATTGCCGGATTAAATTAACACTTAGTTGAACACAAAAAAAGGA]
[+] EMBL CB669262 [CGTTTTCTTCTTCTCTCACAGAGACGACTCCTCGCTCTCGTTGTCAAGCAGAGGGAGGTTACGAAGAGCGCCGTTGAGGCGGCTGTAATGGTGGACGTGGACAGCAGGATGGCCGGGCTCGCCCACCCGGCGGCGCACGCGGCGGGGCTGCCACTCCTGTCCACGCGCGCCGCCGCGGGGCCACCGTCGGCGTCGGCCTCGCCGCGCCACGGGTTGCACTCTTTTGACGGCGTGGCGGCGGCCGTGCTGTCACGTCTTCGGAAGACCGGGGTGGTCGTTCTTCCCGGGCTCTCCGACGCGGAGTTCGCCCGCTTGGAGGCGGAGATGGGGTTCACGTTCCCGCCTGACCTCCGCGCCGTGCTGGCGATGGGGCTCCCGTCGGGGGCTGGGTTCCCGGACTGGCGCGGACGGGCGTGGCTCCGCGCGGCGTTCGACCTGCCCATCGCGGCGGCCTCCCTGCAAATCGCGAAAGGTGCGCTGTGGCCGCGGTGCTGGGG GCGGAGGC ]
[+] EMBL AK108731 [ AGAGGGAGGTTACGAAGAGCGCCGTTGAGGCGGCTGTAATGGTGGACGTGGACAGCAGGATGGCCGGGCTCGCCCACCCGGCGGCGCACGCGGCGGGGCTGCGACGCCTGTCCACGCGCGCCGCCGCGGGGCCACCGTCGGCGTCGGCGTCGCCGCGCCACGGGTTGCACTCTTTTGACGGCGTGGCGGCGGCCGTGCTGTCGCATCTTCGGAAGACCGGGGTGGTCGTTCTTCCCGGGCTCTCCGACGCGGAGTTCGCCCGCGTGGAGGCGGAGATGGGGTTCACGTTCCCGCCTGACCTCCGCGCCGTGCTGGCAATGGGGCTCCCGTCGGGGGCTGGGTTCCCGGACTGGCGCGGCCGGGCGTGGCTCCGCGCGGCGTTCGACCTGCCCATCGCGGCGGCGTCGCTGCAGATCGCGAAGGGTGCGCTGTGGCCGCGGTGCTGGGG GCGGAGGCCGTCGGACCCCGACCGAGCGCGGCGGTTAGC GCGGTCCGCCATCAGGCGCGCGCCGCTGCTCGTGCCGCTGTTCGACCGGTGCTACCTTCCCTGCCGCCCCTGTCTCGCCGGGAACCCCATGTTCTTCATCACCGACGACCGCGTGCTCTGCTGCGGCCTCGACATCCTCCATTTCTTCACCCGCGAGTCCTCGTTCCAGCCGCTGGACGTGTCCTCCCCGTCGGCGACGCCCTCCTCCGGCATTTGCACGCCGCACACGCGACGCAGCCTCGACGCCGTCTGCGGCGGCCAGGCGCTGCGCTGGATCGAGTTCTGGAGCGACGCGGCCTCCGACCGACGCCGCCGCGTCTCATCGTCCTCGGAAGCCTCCACCGCCTCCTCATCGTCGTCCTCCTCAGGCTGCCCTTCGCCACCTCCGAGGTCGACCCCGCTCTGGGTCGACAACTACCTCGACAAGCTCGGATCGGTGCTCAAGAAAGGTGGCTGGAGGGACAGAGAGGTCGACGAGATGGTCGAGGTCACCGCCTCCGGACTGTTCGACGGCGAGGAGGCACCCCCAGCCGACGCCGACGCGGTGCTCGACGCGCTGTTCCTAAAAACGGACCGGTGCTCGGACTCACTCCGGCGAGCAGGGTGGACCTCCGAGGACGTCTCGGATGCGTTCGGGCTTGACCTCCGTCGGCGAAAGGAGCAGCCGCGGCCAGCCGTGCAGATACCGCCGGAGATCGCCGCCAAGGTCCAGCGCCTCGCGCAAGCGGTGGCGAGGCCGTGACCTCACCGGGCACCGGCCGAACATGTGGGGCCCTGCCGTTTCTTCCTCGTCTCTGCGTTTTTTTCCCCGCATAGGAGGAATTAAACAACACTTATGTCAAGTGAAAAGTAAACTAGCCCATGTTCGTGTGCATGAATACACAAGTAAATTAAGATGTGTTCATGTGCACAATGAACCGTTAATTGTAAGACACGGTCTCCCAGAAATGAAAACTGCATA ]
[+] EMBL AU173475 [ AGGGTGCNCTGTGGCCGCGGTGCTGGGGNCCGGAGGCCGTCGGACCCNGACCGAGCGCGGCGGTTAGCTGCGGTNCGCCATNAGGCGCGCGCCGCTGCTCGTGCCGCTGTTCGACCGGTGCTACCTTCCCTGCCGCCCCTGTCTNGCCGGGAACCCCGTGTTCTTCATCACCGACGACCGCGTGCTCTGCTGNGGCCTCGACATCCTCCATTTCTTCACCCGCGAGTCCTAGTTCCAGCCGCTGGACGTGTCCTCCCCGTCGGCGACGCCCTCCTCCGGCATTTGCACGCCGCACACGCGACGCAGCCTCGACGCCGTCTGCGGNGGCCAGGCGCTGCGCTGGATCGAGTTCTGGAGCGACGCGGCCTCCGACCGAC ]
[-] EMBL CB669263 [ CTGCGCTGGATCGAGTTCTGGAGCGACGCGGCCTCCGACCGACGCCGCCGCGTCTCATCATCCTCGGAAGCCTCCACCGCCTCTTCATGGTGGTCCTCCTCAGGCTGCCCTTCGCCACCTCCGAGGTCGACCCCGCTCTGGGTCGACAACTACCTCGACAAGCTCGGATCGGTGCTCAAGAAAGGTGGCTGGAGGGACAGAGAGGTCGACGAGATGGTCGAGGTCACCGCCTCCGGACTGTTCGACGGCGAGGAGGCACCCCCAGCCGACGCCGACGCGGTGCTCGACGCGCTGTTCCTAAAAACGGACCGGTGCTCGGACTCACTCCGGCGAGCAGGGTGGACCTCCGAGGACGTCTCGGATGCGTTCGGGCTTGACCTCCGTCGGCGAAAGGAGCAGCCGCGGCCAGCTGTGCAGATACCGCCGGAGATCGCCGCCAAGGTCCAGCGCCTCGCGCAAGCGGTGGCGAGGCCGTGACCTCACCGGGCACCGGCCGAACATGTGGGGCCCTGCCGTTTCTTCCTCGTCTCTGGGTTTTTTTCCCCGCATAGGAGGAATTAAACAACACTTATGTCAAGTGAAAAGTAAACTAGCCCATGTTCGTGTGCATGAATACACAAGTAAATTAAGATGTGTTCATGTGCACAATGAACCGTTAATTGTAAGACACGGTCTCCCAGAAATGAAAACTGCATATTGCCGGATTAAATTAACACTTAGTTGAACACAAAAAAAGGA]
[+] EMBL AU173476 [ CGGGCTTGACCTCCGTCGGCGAAAGGAGCAGCCGCGGCCANCCGTGCAGATACCGCCGGAGATCGCCGCCAAGGTCCAGCGCCTCGCGCAAGCGGTGGCGAGGCCGTGACCTCACCGGGCACCGGCCGAACATGTGGGGCCCTGCCGTTTCTTCCTCGTCTCTGCGTTTTTTTCCCCGCATAGGAGGAATTAAACAACACTTATGTCAAGTGAAAAGTAAACTAGCCCATGTTCGTGTGCATGAATACACAAGTAAATTAAGATGTGTTCATGTGCACAATGAACCGTTAATTGTAAGACACGGTCTCCCAGAAATGAAAACTGCATATTGCCGGATTAAATTAACACTTAGTTGAACACAAAAAAA ]
consensusID : consensus_9632#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence
[TCTCTCCGAGCAGCGAGCAACGCCGCCGTTTTCTTCGCCTCTCACAGAGACGACTCCTCGCTCTCGTTGTCAAGCAGAGGGAGGTTACGAAGAGCGCCGTTGAGGGGCTGTAATGGTGGACGTGGACAGCAGGATGGCCGGGCTCGCCCACCNGGCGGCGCACGCGGCGGGGCTGCGACGCCTGTCCACGCGCGCCGCCGCGGGGCCANCGTCGGCNTCGCNGTCGCCGCGCCACGGGTTGCACTNTTTTAACGGCGTGGCGNCGNCNTNCTGTCGCATNTTNGGAAGACCNNCGNTGGTNNTTCTTNCCNCGCTTTACGANGCGNAGTTNGCNCCN]
[+] EMBL OSR17581A [TCTCTCCGAGCAGCGAGCAACGCCGCCGTTTTCTTCGCCTCTCACAGAGACGACTCCTCGCTCTCGTTGTCAAGCAGAGGGAGGTTACGAAGAGCGCCGTTGAGGGGCTGTAATGGTGGACGTGGACAGCAGGATGGCCGGGCTCGCCCACCNGGCGGCGCACGCGGCGGGGCTGCGACGCCTGTCCACGCGCGCCGCCGCGGGGCCANCGTCGGCNTCGCNGTCGCCGCGCCACGGGTTGCACTNTTTTAACGGCGTGGCGNCGNCNTNCTGTCGCATNTTNGGAAGACCNNCGNTGGTNNTTCTTNCCNCGCTTTACGANGCGNAGTTNGCNCCN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9632#0 --------------------------CGTTTTCTTCTTCTCTCACAGAGACGACTCCTCG 34
consensus_9632#1 TCTCTCCGAGCAGCGAGCAACGCCGCCGTTTTCTTCGCCTCTCACAGAGACGACTCCTCG 60
********** **********************
consensus_9632#0 CTCTCGTTGTCAAGCAGAGGGAGGTTACGAAGAGCGCCGTTGAGGCGGCTGTAATGGTGG 94
consensus_9632#1 CTCTCGTTGTCAAGCAGAGGGAGGTTACGAAGAGCGCCGTTGAGG-GGCTGTAATGGTGG 119
********************************************* **************
consensus_9632#0 ACGTGGACAGCAGGATGGCCGGGCTCGCCCACCCGGCGGCGCACGCGGCGGGGCTGCCAC 154
consensus_9632#1 ACGTGGACAGCAGGATGGCCGGGCTCGCCCACCNGGCGGCGCACGCGGCGGGGCTGCGAC 179
********************************* *********************** **
consensus_9632#0 TCCTGTCCACGCGCGCCGCCGCGGGGCCACCGTCGGCGTCGGCCTCGCCGCGCCACGGGT 214
consensus_9632#1 GCCTGTCCACGCGCGCCGCCGCGGGGCCANCGTCGGCNTCGCNGTCGCCGCGCCACGGGT 239
**************************** ******* *** ****************
consensus_9632#0 TGCACTCTTTTGACGGCGTGGCGGCGGCCGTGCTGTCACGTCTTCGGAAGACCGG-GGTG 273
consensus_9632#1 TGCACTNTTTTAACGGCGTGGCGNCGNCN-TNCTGTCGCATNTTNGGAAGACCNNCGNTG 298
****** **** *********** ** * * ***** * * ** ******** * **
consensus_9632#0 GTCGTTCTTCCCGGGCTCTCCGACGCGGAGTTCGCCCGCTTGGAGGCGGAGATGGGGTTC 333
consensus_9632#1 GTNNTTCTTNCCNCGCTTTACGANGCGNAGTTNGCNCCN--------------------- 337
** ***** ** *** * *** *** **** ** *
consensus_9632#0 ACGTTCCCGCCTGACCTCCGCGCCGTGCTGGCGATGGGGCTCCCGTCGGGGGCTGGGTTC 393
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 CCGGACTGGCGCGGACGGGCGTGGCTCCGCGCGGCGTTCGACCTGCCCATCGCGGCGGCC 453
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 TCCCTGCAAATCGCGAAGGGTGCGCTGTGGCCGCGGTGCTGGGGGCGGAGGCCGTCGGAC 513
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 CCCGACCGAGCGCGGCGGTTAGCGCGGTCCGCCATCAGGCGCGCGCCGCTGCTCGTGCCG 573
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 CTGTTCGACCGGTGCTACCTTCCCTGCCGCCCCTGTCTCGCCGGGAACCCCATGTTCTTC 633
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 ATCACCGACGACCGCGTGCTCTGCTGCGGCCTCGACATCCTCCATTTCTTCACCCGCGAG 693
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 TCCTCGTTCCAGCCGCTGGACGTGTCCTCCCCGTCGGCGACGCCCTCCTCCGGCATTTGC 753
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 ACGCCGCACACGCGACGCAGCCTCGACGCCGTCTGCGGCGGCCAGGCGCTGCGCTGGATC 813
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 GAGTTCTGGAGCGACGCGGCCTCCGACCGACGCCGCCGCGTCTCATCGTCCTCGGAAGCC 873
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 TCCACCGCCTCCTCATCGTCGTCCTCCTCAGGCTGCCCTTCGCCACCTCCGAGGTCGACC 933
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 CCGCTCTGGGTCGACAACTACCTCGACAAGCTCGGATCGGTGCTCAAGAAAGGTGGCTGG 993
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 AGGGACAGAGAGGTCGACGAGATGGTCGAGGTCACCGCCTCCGGACTGTTCGACGGCGAG 1053
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 GAGGCACCCCCAGCCGACGCCGACGCGGTGCTCGACGCGCTGTTCCTAAAAACGGACCGG 1113
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 TGCTCGGACTCACTCCGGCGAGCAGGGTGGACCTCCGAGGACGTCTCGGATGCGTTCGGG 1173
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 CTTGACCTCCGTCGGCGAAAGGAGCAGCCGCGGCCAGCCGTGCAGATACCGCCGGAGATC 1233
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 GCCGCCAAGGTCCAGCGCCTCGCGCAAGCGGTGGCGAGGCCGTGACCTCACCGGGCACCG 1293
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 GCCGAACATGTGGGGCCCTGCCGTTTCTTCCTCGTCTCTGCGTTTTTTTCCCCGCATAGG 1353
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 AGGAATTAAACAACACTTATGTCAAGTGAAAAGTAAACTAGCCCATGTTCGTGTGCATGA 1413
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 ATACACAAGTAAATTAAGATGTGTTCATGTGCACAATGAACCGTTAATTGTAAGACACGG 1473
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 TCTCCCAGAAATGAAAACTGCATATTGCCGGATTAAATTAACACTTAGTTGAACACAAAA 1533
consensus_9632#1 ------------------------------------------------------------
consensus_9632#0 AAAGGA 1539
consensus_9632#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||