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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1720 fasta sequence
[TTTCGTTTCCGTTTCTTGCGCCTCCTCCAACCGCGGCGGCCGTCAGTGGGGAGCCTCGTCGGCGTCCGCCTCCGCCATTCGCGAGAGGAATTCAGGTGATCCCTCTCCCTACCAGAGCCGCGCTCCCCTCCGATCCTCCCCGAATCTGGATGATCTCCCCCGATTCCGCTCGGCTTCGCTGATCCCCCCTCCGCCGCCGCCGCCGCCGCCG-GGCGNGTGGGCT-ATCCCGCTTGTCGGAATCGATCGATTTCTGAGGCCTTGGATTGTGATGAAGTCATGGATATCGGGCCGCATAGCATCCAGCTGATCGCGNCGCCGTCCCTCTATCACGCCGCCTCCGCTGCCGCCATGGGTG-ATCACCGCGACCCGGCTTTCCCCGCGGCGGCGGGCGGCTGCCGGCTGCCCAAGACGTCGTCGGTGAGCGTCACGGAGTCCGTCACCGCGGTGCACGATTTCAAGGTGACGGGTTACTCGCTGATCGAGGGGCTGGGCATCGGCAGGTACGTCAGCTCATCCACCTTCACCGTCGGCGGCGTCGACTGGGCCGTCAGGTTCTACCCCGACGGCTCCACCGTCACCTGCCTCGGGAACGCGTCGGCGTTCCTCTACTACTGCGGCAGGGAGAAGGAGGTCAGGACCAGGTTCACCCTGAATCTGCTCGGCAAGGACGGCAAATTGTCGCAGGTGACCAATTCCTACATGAAGCACACCTTCTCCCCGGCGAGTGACAATTGGGGATTCATCAAATTCGCCGAGAAATCGAAGCTGCAGAGCTCGCCGTTCCTCCACAACGACTGCCTGACCATCAGGTGCTTGCTGACCGTCGTCAGGGAATCCCACACCAAGGATGTTGAGGTCAATTCTGTTGTTGTCCCACCGTCCAACCTGCATACCGATTTTGAGAACATGCTCCAGGATGGTGAAGGTTCAGATGTGACATTCGCCGTGGGTGGCCAAGAGTTCCGTGCTCATAAATGTGTTCTTGCCTTCCGGTCCCCGGTGTTCAAGGCCGAGCTTTTCGGTCCGATGAAAGAAAATGGCACGCAATGTATCAAGATCGACGACATGGAGCCTGAGGTTTTTGAGGCTCTTCTTCTCTTCATTTACACAGATAGGCTGCCAGATAGCTGCAGAGATGGCAAGGCTGCAGCAATGCAGCACTTGCTAGTTG-CCGCGGATCGGTACGGAGTGGACAGGCTGAGGCTGATTTGTGAGAGGCGGCTCAGCGAAACCATTGATGTGGAAACAGTGGCAACCACTCTTGTTTTAGCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATCCTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTACTCTATACTCACATGCTTTCCTGAATGTATAATGACTAGTT]
[+] EMBL AK070994 [TTTCGTTTCCGTTTCTTGCGCCTCCTCCAACCGCGGCGGCCGTCAGTGGGGAGCCTCGTCGGCGTCCGCCTCCGCCATTCGCGAGAGGAATTCAGGTGATCCCTCTCCCTACCAGAGCCGCGCTCCCCTCCGATCCTCCCCGAATCTGGATGATCTCCCCCGATTCCGCTCGGCTTCGCTGATCCCCCCTCCGCCGCCGCCGCCGCCGCCGCGGCGGGTGGGCT ATCCCGCTTGTCGGAATCGATCGATTTCTGAGGCCTTGGATTGTGATGAAGTCATGGATATCGGGCCGCATAGCATCCAGCTGATCGCGCCGCCGTCCCTCTATCACGCCGCCTCCGCTGCCGCCATGGGTG ATCACCGCGACCCGGCTTTCCCCGCGGCGGCGGGCGGCTGCCGGCTGCCCAAGACGTCGTCGGTGAGCGTCACGGAGTCCGTCACCGCGGTGCACGATTTCAAGGTGACGGGTTACTCGCTGATCGAGGGGCTGGGCATCGGCAGGTACGTCAGCTCATCCACCTTCACCGTCGGCGGCGTCGACTGGGCCGTCAGGTTCTACCCCGACGGCTCCACCGTCACCTGCCTCGGGAACGCGTCGGCGTTCCTCTACTACTGCGGCAGGGAGAAGGAGGTCAGGACCAGGTTCACCCTGAATCTGCTCGGCAAGGACGGCAAATTGTCGCAGGTGACCAATTCCTACATGAAGCACACCTTCTCCCCGGCGAGTGACAATTGGGGATTCATCAAATTCGCCGAGAAATCGAAGCTGCAGAGCTCGCCGTTCCTCCACAACGACTGCCTGACCATCAGGTGCTTGCTGACCGTCGTCAGGGAATCCCACACCAAGGATGTTGAGGTCAATTCTGTTGTTGTCCCACCGTCCAACCTGCATACCGATTTTGAGAACATGCTCCAGGATGGTGAAGGTTCAGATGTGACATTCGCCGTGGGTGGCCAAGAGTTCCGTGCTCATAAATGTGTTCTTGCCTTCCGGTCCCCGGTGTTCAAGGCCGAGCTTTTCGGTCCGATGAAAGAAAATGGCACGCAATGTATCAAGATCGACGACATGGAGCCTGAGGTTTTTGAGGCTCTTCTTCTCTTCATTTACACAGATAGGCTGCCAGATAGCTGCAGAGATGGCAAGGCTGCAGCAATGCAGCACTTGCTAGTTG CCGCGGATCGGTACGGAGTGGACAGGCTGAGGCTGATTTGTGAGAGGCGGCTCAGCGAAACCATTGATGTGGAAACAGTGGCAACCACTCTTGTTTTAGCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATCCTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTACTCTATACTCACATGCTTTCCTGAATGTATAATGACTAGTT]
[+] EMBL OSS4851A [ TTCGTTTCCGTTTCTTGCGCCTCCTCCAACCGCGGCGGCCGTCAGTGGGGAGCCTCGTNGGCGTCCGCCTCCGCCATTCGCGAGAGGAATTCAGGTGATCCCTCTCCCTACCAGAGCCGCGCTCCCCTCCGATCCTCCCCGAATCTGGATGATCTCCCCCGATTCCGCTCGGCTTCGCTGATCCCCCCTCCGCCGCCGCCGNCGCCGCCG GGTGNTNGGGCT ATCCCGCTTGTCGGAATCGATCGATTTCTGAGGCCTTGGATTGTGATGAAGTCATGGATATCGGGCCGCATAGCATCCAGCTGATCGCGNCGCCGT ]
[+] EMBL OSC172 [ CGTTTCCGTTTCTTGCGCCTCCTCCAACCGCGGCGGCCGTCAGTGGGGAGCCTCGTCGGCGTCCG CTCCGCCATTCGCGAGAGGAATTCAGGTGATCCCTCTCCCTACCAGAGCCGCGCTCCCCTCCGATCCTCCCCGAATCTGGATGATCTCCCCCGATTCCGCTCGGCTTCGCTGATCCCCCCTCCGCCGCCGNCGCCGCCGCCG GGATNGTGNGCTAATCCCGCTTGTCGGAATCGATCGATTTCTGAGGCCTTGGATTGTGATGAAGTCATGGATATCGGGCCGCATAGCATCCAGCTGATCGCGNCGCCGTNCCTCTATCACGGCGCCTNCGTTGCCGCCATGGGTGAATNAACGCGAa ]
[+] EMBL CB096468 [ ATGTATCAAGATCGACGACATGGAGCCTGAGGTTTTTGAGGCCCTTCTTCACTTCATTTACACAGATAGGCTGCCAGATAGCTGCAGAGATGGCAAGGCTGCAGCAATGCAGCACTTGCTAGTTG CCGCGGATCGGTACGGAGTGGACAGGCTGAGGCTGATTTGTGAGAGGCGGCTCAGCGAAACCATTGATGTGGAAACAGTGGCAACCACTCTTGTTTTAGCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATCCTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTACTCT ]
[+] EMBL BQ906662 [ GGCTGCCAGATAGCTGCAGAGATGGCAAGGCTGCAGCAATGCAGCACTTGCTAGTTGTCTGCGGATCGGTACGGAGTGGACAGGCTGAGGCTGATTTGTGAGAGGCGGCTCAGCGAAACCATTGATGTGGAAACAGTGGCAACCACTCTTGTTTTAGCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATCCTTCC ACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTAAGTTTGGGCAaaaaa ]
consensusID : consensus_9641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[GCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATCCTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTACTCTATACTCAAAAAAAAAAA]
[+] EMBL AU174341 [GCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATCCTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTACTCTATACTCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9641#0 TTTCGTTTCCGTTTCTTGCGCCTCCTCCAACCGCGGCGGCCGTCAGTGGGGAGCCTCGTC 60
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 GGCGTCCGCCTCCGCCATTCGCGAGAGGAATTCAGGTGATCCCTCTCCCTACCAGAGCCG 120
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 CGCTCCCCTCCGATCCTCCCCGAATCTGGATGATCTCCCCCGATTCCGCTCGGCTTCGCT 180
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 GATCCCCCCTCCGCCGCCGCCGCCGCCGCCGGGCGNGTGGGCTATCCCGCTTGTCGGAAT 240
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 CGATCGATTTCTGAGGCCTTGGATTGTGATGAAGTCATGGATATCGGGCCGCATAGCATC 300
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 CAGCTGATCGCGNCGCCGTCCCTCTATCACGCCGCCTCCGCTGCCGCCATGGGTGATCAC 360
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 CGCGACCCGGCTTTCCCCGCGGCGGCGGGCGGCTGCCGGCTGCCCAAGACGTCGTCGGTG 420
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 AGCGTCACGGAGTCCGTCACCGCGGTGCACGATTTCAAGGTGACGGGTTACTCGCTGATC 480
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 GAGGGGCTGGGCATCGGCAGGTACGTCAGCTCATCCACCTTCACCGTCGGCGGCGTCGAC 540
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 TGGGCCGTCAGGTTCTACCCCGACGGCTCCACCGTCACCTGCCTCGGGAACGCGTCGGCG 600
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 TTCCTCTACTACTGCGGCAGGGAGAAGGAGGTCAGGACCAGGTTCACCCTGAATCTGCTC 660
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 GGCAAGGACGGCAAATTGTCGCAGGTGACCAATTCCTACATGAAGCACACCTTCTCCCCG 720
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 GCGAGTGACAATTGGGGATTCATCAAATTCGCCGAGAAATCGAAGCTGCAGAGCTCGCCG 780
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 TTCCTCCACAACGACTGCCTGACCATCAGGTGCTTGCTGACCGTCGTCAGGGAATCCCAC 840
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 ACCAAGGATGTTGAGGTCAATTCTGTTGTTGTCCCACCGTCCAACCTGCATACCGATTTT 900
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 GAGAACATGCTCCAGGATGGTGAAGGTTCAGATGTGACATTCGCCGTGGGTGGCCAAGAG 960
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 TTCCGTGCTCATAAATGTGTTCTTGCCTTCCGGTCCCCGGTGTTCAAGGCCGAGCTTTTC 1020
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 GGTCCGATGAAAGAAAATGGCACGCAATGTATCAAGATCGACGACATGGAGCCTGAGGTT 1080
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 TTTGAGGCTCTTCTTCTCTTCATTTACACAGATAGGCTGCCAGATAGCTGCAGAGATGGC 1140
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 AAGGCTGCAGCAATGCAGCACTTGCTAGTTGCCGCGGATCGGTACGGAGTGGACAGGCTG 1200
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 AGGCTGATTTGTGAGAGGCGGCTCAGCGAAACCATTGATGTGGAAACAGTGGCAACCACT 1260
consensus_9641#1 ------------------------------------------------------------
consensus_9641#0 CTTGTTTTAGCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTG 1320
consensus_9641#1 ---------GCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTG 51
***************************************************
consensus_9641#0 GCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAA 1380
consensus_9641#1 GCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAA 111
************************************************************
consensus_9641#0 AGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAG 1440
consensus_9641#1 AGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAG 171
************************************************************
consensus_9641#0 TCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAA 1500
consensus_9641#1 TCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAA 231
************************************************************
consensus_9641#0 AGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATC 1560
consensus_9641#1 AGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATC 291
************************************************************
consensus_9641#0 CTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGC 1620
consensus_9641#1 CTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGC 351
************************************************************
consensus_9641#0 ACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTAC 1680
consensus_9641#1 ACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTAC 411
************************************************************
consensus_9641#0 TCTATACTCACATGCTTTCCTGAATGTATAATGACTAGTT 1720
consensus_9641#1 TCTATACTCAAAAAAAAAAA-------------------- 431
********** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||