These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 684 fasta sequence [ACGACCACACATAAGCTTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGCGGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGACGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTACGGCGGCATTGGTGACCTCAGCATGTTGGTGATTTTAATTTCTTTGGTTGTCACTGAGACCTGAATGGTTCACATATTTTCTTTTTTATTTAGTTTTAAATGTTTTTTTTTATTTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGACACTGGCAATGTGATCCTATTAAGGTTGGCTGGAAAAAA] [+] EMBL AK062965 [ACGACCACACATAAGCTTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGCGGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGACGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTACGGCGGCATTGGTGACCTCAGCATGTTGGTGATTTTAATTTCTTTGGTTGTCACTGAGACCTGAATGGTTCACATATTTTCTTTTTTATTTAGTTTTAAATGTTTTTTTTTATTTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAG ] [+] EMBL OS1321832 [ CGTCCGACGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGNCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTACGGCGGCATTTGTGACCTCAACATG ] [+] EMBL AU174384 [ GCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTACGGCGGCATTGGTGACCTCAGCATGTTGGTGATTTTAATTTCTTTGGTTGTCACTGAGACCTGAATGGTTCACATATTTTCTTTTTTATTTAGTTTTAAATGTTTTTTTTTATTTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGACACTGGCAATGTGATCCTATTAAGGTTGGCTGGAAAAAA] consensusID : consensus_9642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 525 fasta sequence [TTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGCGGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGACGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGCCAAAAAAAAAAAAAAA] [+] EMBL AU198154 [TTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGCGGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGACGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGG ] [+] EMBL AU198155 [ TCCGACGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCCCAACGGCAAGCAGTGGCCTTGGCGAGTAACGATNTCGGTNTCATTGAGCAGCAGGAGAGGCGACAACCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAGGANAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGCCAAAAAAAAAAAAAAA] consensusID : consensus_9642#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [GAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGACACTGGCAATGTGATCCTATTAAGGTTGGCTGGACTTTTGGATTTGTGTGATTTTTTTTCTTTCCTTGTTTTCCCTTTTCTAAGTAACTATAGAGCGTGCACGTGCAAGGCACGTTGATACATAGAATGACAGCTCACTGAAAATTCAGTTCATCCTTAGACCATTCTGTAAAGGAGAAGCTTAGCAAACCGTTTCTTCAGCTATGAAATGATAAATCAAAATAAACAGAGTG] [+] EMBL AK062644 [GAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTATGCATCTGGGCATGCTGTGGGTATTGATTTGGGTATCAATATGTGATTTGGACAGAGCCGACTCGAATTGAGCTTCTTTCTGTTTTGTGATATAAATCGAGGCTTAGGAGACACTGGCAATGTGATCCTATTAAGGTTGGCTGGACTTTTGGATTTGTGTGATTTTTTTTCTTTCCTTGTTTTCCCTTTTCTAAGTAACTATAGAGCGTGCACGTGCAAGGCACGTTGATACATAGAATGACAGCTCACTGAAAATTCAGTTCATCCTTAGACCATTCTGTAAAGGAGAAGCTTAGCAAACCGTTTCTTCAGCTATGAAATGATAAATCAAAATAAACAGAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9642#0 ACGACCACACATAAGCTTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGC 60 consensus_9642#1 ----------------TTCTCCCTCGATCTCTCCTACAAGCCACACATGAGCAACGCAGC 44 consensus_9642#2 ------------------------------------------------------------ consensus_9642#0 GGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGA 120 consensus_9642#1 GGCCTCGGCCCCTACGAGCAACCACAAGCCGACAACGATGGTGGCGGCAACCCCGTCCGA 104 consensus_9642#2 ------------------------------------------------------------ consensus_9642#0 CGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCC-CAACGGC 179 consensus_9642#1 CGAGCAACGACCTCAGGCTCATCGAGTAGTGAGAGAAGCAACGGCCTCGGCC-CAACGGC 163 consensus_9642#2 -GAGTTCAGGCCTCGGCCTCGGCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTC 59 *** * **** * *** * **** *** * ** ***** ** ** * * consensus_9642#0 AAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCAT-TGAGCAGCAGGAGAGGCGACAA 238 consensus_9642#1 AAGCAGTGGCCTTGGCGAGTAACGATCTCGGTCTCAT-TGAGCAGCAGGAGAGGCGACAA 222 consensus_9642#2 GAGCAAGCAACTAGGTATGCA----TCTGGGCATGCTGTGGGTATTGATTTGGGTATCAA 115 **** ** ** * * *** ** * * ** * * ** *** consensus_9642#0 CCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAG 298 consensus_9642#1 CCTCGGCACCGATAAGCAACGGCCCCAGTGAGTAGCGACTTTGGCATTGTTGTGCGGCAG 282 consensus_9642#2 TATGTGATTTGGACAGAGCCGACTCGAATTG--AGCTTCTTT----CTGTTTTGTGATAT 169 * * * ** ** * * * * *** **** **** ** * * consensus_9642#0 GAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCG 358 consensus_9642#1 GAGAGGCAACGGCCTCGGCACAGGCAGTGGCGACCCCAGTGAGTTCAGGCCTCGGCCTCG 342 consensus_9642#2 AAATCGAGGCTTAGGAGACACTGGCAATG-TGATCCTATTAAGGTTGG--CTGGACTTTT 226 * * * * *** **** ** ** ** * * ** * * ** * * * consensus_9642#0 GCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTACGGC 418 consensus_9642#1 GCAGGTAGCAGGAGTGGTGGCGTCCTCGTCCTCAGCCTCGAGCAAGCAACTAGGTA---- 398 consensus_9642#2 G-GATTTGTGTGATTTTTTTTCTTTCCTTGTTTTCCCTTTTCTAAGTAACTATAGA---- 281 * * * ** * * * * * * *** *** ***** * consensus_9642#0 GGCATTGGTGACCTCAGCATGTTGGTGATTTTAATTTCTTTGGTTGTCACTGAGACCTGA 478 consensus_9642#1 ------------------------------------------------------------ consensus_9642#2 -GCGTGCACGTGCAAGGCACGTTG------------------------------------ 304 consensus_9642#0 ATGGTTCACATATTTTCTTTTTTATTTAGTTTTAAATGTTTTTTTTTATTTAGGTATGCA 538 consensus_9642#1 --------------------------------------------------------TGCA 402 consensus_9642#2 -------------------------------------------------------ATACA 309 * ** consensus_9642#0 TCTGGGCATGCTGTGGGTATTGATTTGGGT-ATCAATATGTGATTTGGACAGAGCCGACT 597 consensus_9642#1 TCTGGGCATGCTGTGGGTATTGATTTGGGT-ATCAATATGTGATTTGGACAGAGCCGACT 461 consensus_9642#2 TAGAATGACAGC-TCACTGAAAATTCAGTTCATCCTTAGACCATTCTGTAAAGGAGAAGC 368 * * * * *** * * *** ** *** * * * * consensus_9642#0 CGAATTGAGC-TTCTTTCTGTTTTGTGAT-ATAAATCGAGGCTTAGGAGACACTGGCAAT 655 consensus_9642#1 CGAATTGAGC-TTCTTTCTGTTTTGTGAT-ATAAATCGAGGCTTAGGAGCCAAAAAAAAA 519 consensus_9642#2 TTAGCAAACCGTTTCTTCAGCTATGAAATGATAAATCAAAATAAACAGAGTG-------- 420 * * * ** *** * * ** ** ******* * * consensus_9642#0 GTGATCCTATTAAGGTTGGCTGGAAAAAA 684 consensus_9642#1 AAAAAA----------------------- 525 consensus_9642#2 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||