|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 851 fasta sequence
[CCGCCGCGTCTCAGCTCAACCCAGCAGCGCAGACGCTCAAGCCTTCTCGCGTTGCAGCGCCGCGCCGAGGAGGTGTTTGTTGATTTGTGGAGATGGTGGGGGGAGAGGTCATGTGCGAAGCGGCGGCGCCGAGGTACAGGGGGGTGAGGAAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCCGGGACCCGGCGAAGCGGGGGCGCGTAGTGGCTCAGCACCTACGACTCCACCGAGGCCGCGGCAGCGGCCTACGCACGTCGCCGCGCGGAACCTCCGCGGCCCGCTCGCCAGAACCAACTTCCCGCTCGTCTCCTCCCTCCCGCTCCCGTCGCCCCACTACCACCTCCCCGGGAAGGCGGCGGCGGCGGCGCCGCCGGTAGGACCGGCCCCGCGTGCAGCGAGAGCTCCACCGTCGAGTCCTCGAGCGGGCCTCCCGGGCCCAGACCGGCCGGCCACGCGCGGCAGGCGGTGCCCCGGAGGCGGGTCCCGCGGCCCGCGCCACCGGCGCCCGACGCCGGCTGCCACAGCGACTGCGCCTCGTCGGCCTCCGTCTGTGGACGACGCCGACGACAGCCTCCACCGTTCGGTCACGCGTGGCGGCGTTCGACCTCAAGCCTCCCGCCGCCGCTGGACCGGGACCACGTCGACCTGTGCACGGACCTCCGGCTCTGATAGGAATCCACACCGAATCGAAGCAACCGGAGAAGACGATTCTACTGTATCGTCATCTTCTCCCAATTAGATGCTAGTATTCGACTCGACAATAGTCTGTACCACTATTCTTTACGCGATAATTGACAAGGAATGGCCCTCTTGAGTTTCAAAATCAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK067373 [CCGCCGCGTCTCAGCTCAACCCAGCAGCGCAGACGCTCAAGCCTTCTCGCGTTGCAGCGCCGCGCCGAGGAGGTGTTTGTTGATTTGTGGAGATGGTGGGGGGAGAGGTCATGTGCGAAGCGGCGGCGCCGAGGTACAGGGGGGTGAGGAAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCCGGGACCCGGCGAAGCGGGGGCGCGTAGTGGCTCAGCACCTACGACTCCACCGAGGCCGCGGCAGCGGCCTACGCACGTCGCCGCGCGGAACCTCCGCGGCCCGCTCGCCAGAACCAACTTCCCGCTCGTCTCCTCCCTCCCGCTCCCGTCGCCCCACTACCACCTCCCCGGGAAGGCGGCGGCGGCGGCGCCGCCGGTAGGACCGGCCCCGCGTGCAGCGAGAGCTCCACCGTCGAGTCCTCGAGCGGGCCTCCCGGGCCCAGACCGGCCGGCCACGCGCGGCAGGCGGTGCCCCGGAGGCGGGTCCCGCGGCCCGCGCCACCGGCGCCCGACGCCGGCTGCCACAGCGACTGCGCCTCGTCGGCCTCCGTCTGTGGACGACGCCGACGACAGCCTCCACCGTTCGGTCACGCGTGGCGGCGTTCGACCTCAAGCCTCCCGCCGCCGCTGGACCGGGACCACGTCGACCTGTGCACGGACCTCCGGCTCTGATAGGAATCCACACCGAATCGAAGCAACCGGAGAAGACGATTCTACTGTATCGTCATCTTCTCCCAATTAGATGCTAGTATTCGACTCGACAATAGTCTGTACCACTATTCTTTACGCGATAATTGACAAGGAATGGCCC ]
[+] EMBL AU174492 [ cGAGCTCCACCGTCGAGTCCTCGAGCGGGCCTCGCGGGCCCAGACCGG CGGCCACG GCGG NGGCGGTGCCCCGGAGGCGGGTCCCGCGGCCCGCGCCACCGGCGCCCGACGCCGGCTGCCACAGCGATTGCGCCTCGTCGGCCTCCGTC GTGGACGACGCCGACGAC GCCTCCNCCGTTCGGTCCCGCGTGGCGGCGTTTGACCTCAA CCTCCCGCCGCCGCTGGACCGGGACCACGTCGACCTGTGCACGGACCTGCGGCTNTGATAGGAATCCACNCCGAATCGAAGCAACCGGANAAGACGATTCTACTG CTCGTCATCTTTTCCCAATTANATGCTTGTATTCGACTCGACAATAGTCTGTACCACTATTCTTTACGCGATAATTGACAAGGAATGGCCCTCTTGAGTTTCAAAATCAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[CAACCCAGCAGCGCAGCAGCTCAAGCCTTCTCGCGTTGCAGCGCCGCGCCGAGGAGGTGTTTGTTGATTTGTGGAGATGGTGGGGGGAGAGGCCCCGTTAAAAGGTTACTATTCCCCTACTGATGGGAGATTGACCGTGCCACTCTTGATTTGCTGCTAGCCAAGGGTGCCAGTGACCCACCGGATTACGCCTGGGACACGCCACAGTAATACACCCCGCTCGGAGTATGGCCGTCTTTCGCGTCTGTCAGACAAGATCACATAGAGGGGGGGGCCAGATCCCCCTCTGGTGGCTGATACCCTGGCATTCTGCAGGCGCTCCGTGGCCCCGAGATTATCACAGGGCGGAGGGGTAAAAAATGGCTGAACACGGCTTAAGACCGTTTTGGAGCGAATGCCCTTTTTGCCTACTGTCCGGATTGCCGAGGCGCCACGCACCTGTCCCCCCTCCCCGGGGGCCTGCCCGGGCTAATTCGGGTATGGCCGGCACGCCTCCTTGGGCCACTTTAAACCACCCTTGCCGCGGGGGATGCCTGATCCCCGTGGACCACCTGGCCCTCTCCCGTCCCCAAGGGGCCCCCACCCTTGGCGGTGCAACACCAA]
[+] EMBL CA756135 [CAACCCAGCAGCGCAGCAGCTCAAGCCTTCTCGCGTTGCAGCGCCGCGCCGAGGAGGTGTTTGTTGATTTGTGGAGATGGTGGGGGGAGAGGCCCCGTTAAAAGGTTACTATTCCCCTACTGATGGGAGATTGACCGTGCCACTCTTGATTTGCTGCTAGCCAAGGGTGCCAGTGACCCACCGGATTACGCCTGGGACACGCCACAGTAATACACCCCGCTCGGAGTATGGCCGTCTTTCGCGTCTGTCAGACAAGATCACATAGAGGGGGGGGCCAGATCCCCCTCTGGTGGCTGATACCCTGGCATTCTGCAGGCGCTCCGTGGCCCCGAGATTATCACAGGGCGGAGGGGTAAAAAATGGCTGAACACGGCTTAAGACCGTTTTGGAGCGAATGCCCTTTTTGCCTACTGTCCGGATTGCCGAGGCGCCACGCACCTGTCCCCCCTCCCCGGGGGCCTGCCCGGGCTAATTCGGGTATGGCCGGCACGCCTCCTTGGGCCACTTTAAACCACCCTTGCCGCGGGGGATGCCTGATCCCCGTGGACCACCTGGCCCTCTCCCGTCCCCAAGGGGCCCCCACCCTTGGCGGTGCAACACCAA]
consensusID : consensus_9643#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[CTCTGAGCAGGGCACTCAGCAGGGCCCAAGACCGGCAGGCCACAGGCGGCAGGCAGGTGCCACCGGAGGCAGGGTCCCAACAGGCACCAGCAGCCACCAGGCAGCCACAGACAGCCAGGCTTGCACACAAGCAGACATGCAGCCATCAGTCAGGCACTCCGTCGTGGACAGACGCCGACGACGCCTCCACCGTTCGGTCCCGCGTGCGGCGTTCGACCTCAACCTCCCGCCAGCCGCTGGACCGGGACCACGTCGACCTGTGCACGGACCTGCGGCTCTGATAGGAATCCACACCGAATCGAAGCAACCGGAGAAGACGATTCTACGTGCTCGTCATCTTTTCCCAATTAGATGCTTGTATTCGACTCGACAATAGTCTGTACCACTATTCTTTACGCGATNATTGACAAGGAATGGCCCTCTTGAGTTTCAAAAAA]
[+] EMBL BM420980 [CTCTGAGCAGGGCACTCAGCAGGGCCCAAGACCGGCAGGCCACAGGCGGCAGGCAGGTGCCACCGGAGGCAGGGTCCCAACAGGCACCAGCAGCCACCAGGCAGCCACAGACAGCCAGGCTTGCACACAAGCAGACATGCAGCCATCAGTCAGGCACTCCGTCGTGGACAGACGCCGACGACGCCTCCACCGTTCGGTCCCGCGTGCGGCGTTCGACCTCAACCTCCCGCCAGCCGCTGGACCGGGACCACGTCGACCTGTGCACGGACCTGCGGCTCTGATAGGAATCCACACCGAATCGAAGCAACCGGAGAAGACGATTCTACGTGCTCGTCATCTTTTCCCAATTAGATGCTTGTATTCGACTCGACAATAGTCTGTACCACTATTCTTTACGCGATNATTGACAAGGAATGGCCCTCTTGAGTTTCAAAAAA]
consensusID : consensus_9643#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence
[GCGGGTCTCCGCGGCCCGCGCCACCGGCGCCCGAGCGCCGGCTGCCACCAGCGACTGCGCCTCGTCGGCCTCCGTNCGTGGACGACGCCGAGCGATCGCCTCCACCCGTTCGGTCCCGGCGTGGGCGGCGTTNGTACCTCAACCTCCCGCCGCCGCTGGAGCCGGGAGCCACCGTCGACCCTGTGCACCGGAGCCTGCGGCTTCTGATAGGAATCCACCACCCGAATCGAAGCAACCGGAGAAGACGATTCTACTGCTCGTCATCTTTTCCCCATTAGATGCTTGTATTCGACTCGACAATAGTCTGTACCNCTATTCTTTACGCGATAATTGACAAGGAATGGCCCTCTTGAGTTTCAAAAA]
[+] EMBL BQ908680 [GCGGGTCTCCGCGGCCCGCGCCACCGGCGCCCGAGCGCCGGCTGCCACCAGCGACTGCGCCTCGTCGGCCTCCGTNCGTGGACGACGCCGAGCGATCGCCTCCACCCGTTCGGTCCCGGCGTGGGCGGCGTTNGTACCTCAACCTCCCGCCGCCGCTGGAGCCGGGAGCCACCGTCGACCCTGTGCACCGGAGCCTGCGGCTTCTGATAGGAATCCACCACCCGAATCGAAGCAACCGGAGAAGACGATTCTACTGCTCGTCATCTTTTCCCCATTAGATGCTTGTATTCGACTCGACAATAGTCTGTACCNCTATTCTTTACGCGATAATTGACAAGGAATGGCCCTCTTGAGTTTCAAAAA]
consensusID : consensus_9643#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence
[AGCGCANAGACTNCAAGCCTTCTCGCGTTGCAGCGCCGCGCCGAGGAGGTGTTTGTTGATTTGTGGAGATGGTGGGGGGAGAGGTCATGTGCGAGGCGGCGGCGCCGANGGTACAGGGGGGTGAGGAAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCCGGGACCCGGCGAANGGGCGCGCNTTTGGCTCGGCACCTACGACTCCGCCGAGGCCGCGGCGCGGGCCTACNACGTCGCCGCGCGGAACCTCC]
[+] EMBL AU174491 [AGCGCANAGACTNCAAGCCTTCTCGCGTTGCAGCGCCGCGCCGAGGAGGTGTTTGTTGATTTGTGGAGATGGTGGGGGGAGAGGTCATGTGCGAGGCGGCGGCGCCGANGGTACAGGGGGGTGAGGAAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCCGGGACCCGGCGAANGGGCGCGCNTTTGGCTCGGCACCTACGACTCCGCCGAGGCCGCGGCGCGGGCCTACNACGTCGCCGCGCGGAACCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9643#2 ------------------------------------------------------------
consensus_9643#3 ------------------------------------------------------------
consensus_9643#0 CCGCCGCGTCTCAGCTCAACCCAGCAGCGCAGACGCTCAAGCCTTCTCGCGTTGCAGCGC 60
consensus_9643#4 ------------------------------------------------------------
consensus_9643#1 ------------------------------------------------------------
consensus_9643#2 ------------------------------------------------------------
consensus_9643#3 ------------------------------------------------------------
consensus_9643#0 CGCGCCGAGGAGGTGTTTGTTGATTTGTGGAGATGGTGGGGGGAGAGGTCATGTGCGAAG 120
consensus_9643#4 ------------------------------------------------------------
consensus_9643#1 ------------------------------------------------------------
consensus_9643#2 ------------------------------------------------------------
consensus_9643#3 ------------------------------------------------------------
consensus_9643#0 CGGCGGCGCCGAGGTACAGGGGGGTGAGGAAGCGGCCGTGGGGGAGGTTCGCGGCGGAGA 180
consensus_9643#4 ------------------------------------------------------------
consensus_9643#1 ------------------------------------------------------------
consensus_9643#2 ------------------------------------------------------------
consensus_9643#3 ------------------------------------------------------------
consensus_9643#0 TCCGGGACCCGGCGAAGCGGGGGCGCGTAGTGGCTCAGCACCTACGACTCCACCGAGGCC 240
consensus_9643#4 ------------------------------------------------------------
consensus_9643#1 ------------------------------------------------------------
consensus_9643#2 ------------------------------------------------------------
consensus_9643#3 ------------------------------------------------------------
consensus_9643#0 GCGGCAGCGGCCTACGCACGTCGCCGCGCGGAACCTCCGCGGCCCGCTCGCCAGAACCAA 300
consensus_9643#4 ------------------------------------------------------------
consensus_9643#1 ------------------------------------------------------------
consensus_9643#2 ------------------------------------------------------------
consensus_9643#3 ------------------------------------------------------------
consensus_9643#0 CTTCCCGCTCGTCTCCTCCCTCCCGCTCCCGTCGCCCCACTACCACCTCCCCGGGAAGGC 360
consensus_9643#4 ------------------------------------------------------------
consensus_9643#1 --CAACCCAGCAGCGCAGCAGCTCAAGCCTTCTCGCGTTGCAGCGCCGCGCCGAGGAGGT 58
consensus_9643#2 ------------------------------------CTCTGAGCAGGGCACTCAGCAGGG 24
consensus_9643#3 ------------------------------------------------------------
consensus_9643#0 GGCGGCGGCGGCGCCGCCGGTAGGACCGGCCCCGCGTGCAGCGAGAGCTCCACCGTCGAG 420
consensus_9643#4 ------------------------------------------------------------
consensus_9643#1 GTTTGTTGATTTGTGGAGATGGTGGGGGGAGAGGCCCCGTTAAAAGGTTACTATTCCCCT 118
consensus_9643#2 CCCAAGACCGG------CAGGCCACAGGCGGCAGGCAGGTGCCACCGGAGGCAGGGTCCC 78
consensus_9643#3 ------------------------------------------------------------
consensus_9643#0 TCCTCGAGCGGGCCTCCCGGGCCCAGACCGGCCGGCCACGCGCGGCAGGCGGTGCCCCGG 480
consensus_9643#4 ------------------------------------------------------------
consensus_9643#1 ACTGATGGGAGATTGACCGTGCCACTCTTGATTTGCTGCTAGCCAAGGGTGCCAGTGACC 178
consensus_9643#2 AACAGGCACCAGCAGCCACCAGGCAGCCACAGACAGCCAGGC-TTGCACACAAGCAGACA 137
consensus_9643#3 -GCGGGTCTCCGCGGCCCGC-----GCCACCGGCGCCCGAGCGCCGGCTGCCACCAGCGA 54
consensus_9643#0 AGGCGGGTCCCGCGGCCCGC-----GCCACCGGCGCCCGA-CGCCGGCTGCCA-CAGCGA 533
consensus_9643#4 ------------------------------------------------------------
consensus_9643#1 CACCGGATTACGCCTGGGACACGCCACAGTAATACACCCCGCTCGGAGTATGGCCGTCTT 238
consensus_9643#2 TGCAGCCATCAGTCAGGCACTCCGTCGTGGACAGACGCCGA-CGA-CGCCTCCACC-GTT 194
consensus_9643#3 CTGCGCCTC--GTC-GGCCTCCGTNCGTGGAC-GACGCCGAGCGATCGCCTCCACCCGTT 110
consensus_9643#0 CTGCGCCTC--GTC-GGCCTCCGTCTGTGGAC-GACGCCGA-CGACAGCCTCCACC-GTT 587
consensus_9643#4 -------------------------AGCGCANAGACTNCAA------GCCTTCTCGCGTT 29
consensus_9643#1 TCGCGTCTGTCAGACAAGATCACATAGAGGGGGGGGCCAGATC---CCCCTCTGGTGGCT 295
* * * * *** * *
consensus_9643#2 -CGGTCCC---GCGT-GC-GGCGTTCG---ACCTCAA-CCTCCCGCCAGCCGCTGGA-CC 243
consensus_9643#3 -CGGTCCCGGCGTGG-GC-GGCGTTNGT--ACCTCAA-CCTCCCGCC-GCCGCTGGAGCC 163
consensus_9643#0 -CGGTCACG-CGTG--GC-GGCGTTCG---ACCTCAAGCCTCCCGCC-GCCGCTGGA-CC 637
consensus_9643#4 GCAGCGCCGCGCCGAGGA-GGTGTTTG------TTGA--TTTGTGGA-GATGGTGGG--- 76
consensus_9643#1 GATACCCTGGCATTCTGCAGGCGCTCCGTGGCCCCGAGATTATCACAGGGCGGAGGGGTA 355
* ** * * * * * * **
consensus_9643#2 GGGA-CCAC-GTCGACC-TGTGCAC--GGACCTGCGGCT-CTGA--TAGGAATCCAC--A 293
consensus_9643#3 GGGAGCCACCGTCGACCCTGTGCACCGGAGCCTGCGGCTTCTGA--TAGGAATCCACCAC 221
consensus_9643#0 GGGA-CCAC-GTCGACC-TGTGCAC--GGACCTCCGGCT-CTGA--TAGGAATCCAC--A 687
consensus_9643#4 GGGA-------GAGGTCATGTGC----GAGGCGGCGGCG-CCGA--NGGTA--CAGGGGG 120
consensus_9643#1 AAAAATGGCTGAACACGGCTTAAGAC-CGTTTTGGAGCGAATGCCCTTTTTGCCTACTGT 414
* * ** * *
consensus_9643#2 CCGAATCGAAGCAACCGGAGAAGACGATTCTACGTGCTCGTCATCTTTTCCCAATTAGAT 353
consensus_9643#3 CCGAATCGAAGCAACCGGAGAAGACGATTCTAC-TGCTCGTCATCTTTTCCCCATTAGAT 280
consensus_9643#0 CCGAATCGAAGCAACCGGAGAAGACGATTCTACTGTATCGTCATCTTCTCCCAATTAGAT 747
consensus_9643#4 GTGAG--GAAGCGGCCGTGGGGGAGGTT----CGCGGCGGAGATCCGGGACCCGGCGAAN 174
consensus_9643#1 CCGGATTGCCGAGGCGCCACGCACCTGTCCCCCCTCCCCGGGGGCCTGCCCGGGCTAATT 474
* * * * * * * * *
consensus_9643#2 G--------CTTGTATTCGACTCGACAATAGTCTGTACCACTATTCTT--------TACG 397
consensus_9643#3 G--------CTTGTATTCGACTCGACAATAGTCTGTACCNCTATTCTT--------TACG 324
consensus_9643#0 G--------CTAGTATTCGACTCGACAATAGTCTGTACCACTATTCTT--------TACG 791
consensus_9643#4 GGG------CGCGCNTTTGGCTCGGCA----CCTACGACTCCGCCGAG--------GCCG 216
consensus_9643#1 CGGGTATGGCCGGCACGCCTCCTTGGGCCACTTTAAACCACCCTTGCCGCGGGGGATGCC 534
* * * * * * *
consensus_9643#2 CGATNATTGACAAGGA-ATGGCCCTCTTGAGTTTCAAAAAA------------------- 437
consensus_9643#3 CGATAATTGACAAGGA-ATGGCCCTCTTGAGTTTCAAAAA-------------------- 363
consensus_9643#0 CGATAATTGACAAGGA-ATGGCCCTCTTGAGTTTCAAAATCAAAAAAAAAAAAAAAAAAA 850
consensus_9643#4 CGGCGCGGGCCTACNACGTCGCCGCGCGGAACCTCC------------------------ 252
consensus_9643#1 TGATCCCCGTGGACCACCTGGCCCTCTCCCGTCCCCAAGGGGCCCCCACCCTTGGCGGTG 594
* * * * * *** *
consensus_9643#2 ---------
consensus_9643#3 ---------
consensus_9643#0 A-------- 851
consensus_9643#4 ---------
consensus_9643#1 CAACACCAA 603
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||