These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1920 fasta sequence [CGGCGCTGCTGTACCTCGCCGTCGCGGTCCGGCGCGGCCGCGGCGCCGGCCTGCCGCCGGGTCCGACGGGGCTGCCGCTCGTCGGCAGCTTGCTGTCCCTCGACCCGGAGCTGCACACCTACTTCGCCGGCCTCGCCGCCAGGTACGGCCCCATCTTCTCTATCCGCCTCGGCTCCAAGCTCGGCGTCGTCGTCACCTCGCCGGCGCTGGCGCGGGAGGTGCTGCGCGACCACGACCTCGTCTTCTCCAACCGCGACACGCCCGACGCCGCGTGCTCCATCTCCTACGGCGGCGGGCAGAACATCGTGTGGAACCCGGTCGGCCCCACGTGGCGCCTCCTCCGCCGCATCTGCGTCCACGAGATGATCGGCCCCGCCGGCCTCGACAGCCTCCACGGCCTCCGCCGCCGGGAGTTCATGGCCACGCTCCACCACCTGCGCGCGCGGTCCGGCGAGCCCGTCAACGTCGGCGCGCAGATGTTCCTCACCGTGATGAACGTGGTGACCGGCGCGCTGTGGGGCGGCAACGTCGGCAGCGAGAGCGAGCGGACGACGGTGGGGAAGGAGTTCCGGGAGCTCGTCGCCGACATCACCGAGTTGCTCGGCGCGCCCAACGTGTCCGACTTCTTCCCGGCGCTGGCGCCGCTCGACATCCAGGGCATCCGCAACAAGTCCGACCTGCTCGAGGACCGCTTCGACGACATCTTCGCCAGGATCATCCAGAAGAGGACCGAGTCCGACCATGCCGCCGCCGCCGGCGAGACGGCGTCGGACTTCCTCGAGTACATGCTCAAGCTGGAGAAGGAAGGCGGCGACGGGAAGACCGCCTTCACCATGACCAACGTCAAGGCCCTGCTCATGGACATGGTGATCGGGGGGACGGAGACGACGTCGAACACCGTGGAATGGGGCATGGCGGAGATGCTCCAGAACAGGGGGACGCTGCGCAAGGTGCGGGAGGAGCTCGACGCGGTGGTGGGGCGCGACGGCGTGGTGGAGGAGAGCCACCTCCCGAAGCTGCACTACCTGAATCTGGTGGTCAAGGAGACGCTCCGGCTGCACCCGGCGCTGCCGCTGATGGTGCCGCACTGCCCCGGCGAGGACGCCACGGTGGGCGGCCACCGCGTCCCGGCGGGCGCCCGGGTGTTCGTCAACGTGTGGGCGATCCAGAGGGACCCGGCGGTGTGGAAGGACCCGGAACACTTCATCCCGGAGAGGTTCTTGCCGGCGGACGGCGGCGGAGGGCGGAGGCTGGACTTCACCGGGAGCGAGCAGGAGTACATGCCGTTCGGGTCCGGGAGGAGGATCTGCGCCGGCGTCGCCATGGCGGAGCGGATGGTGGCCTACTCGCTGGCGATGCTGGTGCAGGCGTTCGACTGGGAGCTGCCGGCCGGCGAGCGGCTGGACCTCGCCGAGCGGTTCGGCATCGTGATGAAGAAGGCCACGCCGCTGGTCGCCGTGCCCACGCCGA-GGCTCTCCAACCCTCAGCTCTACTCCGCCTAGATACCAAAGGTTTTAAATCTCGGGCTATAATTGTAGCTAGCTATTCGAAAATGATCTAGCTATTTACTCTCATATGCATTTTAGCTGTTATTTACCGTTTGAGATAATCTACCACAAAATATCTTAGTCTGCTATTTAAAACACTGCTAGATGCTGATGTCACTCCATCAATCAAATACACTCAAGTCAAATGTTAGTGAGAGTTCAGTTATGTTCGGCTCTGTTCATCGGCACGAAACAATTTTTCCGAGCTGGTGTGTTAGCTGGAGAATGTCCATCTATGCTTTCATCTAGGAATGTATACTTAATATATTTTCAGCTAAATATGTATGAAAAGATAATGATATATACTACAAATATTGTGTGTATTGCCGATAAATAAAGGATGGAGATAGAAATTTAAAAAAAAAAAAAAAAA] [+] EMBL AK103567 [CGGCGCTGCTGTACCTCGCCGTCGCGGTCCGGCGCGGCCGCGGCGCCGGCCTGCCGCCGGGTCCGACGGGGCTGCCGCTCGTCGGCAGCTTGCTGTCCCTCGACCCGGAGCTGCACACCTACTTCGCCGGCCTCGCCGCCAGGTACGGCCCCATCTTCTCTATCCGCCTCGGCTCCAAGCTCGGCGTCGTCGTCACCTCGCCGGCGCTGGCGCGGGAGGTGCTGCGCGACCACGACCTCGTCTTCTCCAACCGCGACACGCCCGACGCCGCGTGCTCCATCTCCTACGGCGGCGGGCAGAACATCGTGTGGAACCCGGTCGGCCCCACGTGGCGCCTCCTCCGCCGCATCTGCGTCCACGAGATGATCGGCCCCGCCGGCCTCGACAGCCTCCACGGCCTCCGCCGCCGGGAGTTCATGGCCACGCTCCACCACCTGCGCGCGCGGTCCGGCGAGCCCGTCAACGTCGGCGCGCAGATGTTCCTCACCGTGATGAACGTGGTGACCGGCGCGCTGTGGGGCGGCAACGTCGGCAGCGAGAGCGAGCGGACGACGGTGGGGAAGGAGTTCCGGGAGCTCGTCGCCGACATCACCGAGTTGCTCGGCGCGCCCAACGTGTCCGACTTCTTCCCGGCGCTGGCGCCGCTCGACATCCAGGGCATCCGCAACAAGTCCGACCTGCTCGAGGACCGCTTCGACGACATCTTCGCCAGGATCATCCAGAAGAGGACCGAGTCCGACCATGCCGCCGCCGCCGGCGAGACGGCGTCGGACTTCCTCGAGTACATGCTCAAGCTGGAGAAGGAAGGCGGCGACGGGAAGACCGCCTTCACCATGACCAACGTCAAGGCCCTGCTCATGGACATGGTGATCGGGGGGACGGAGACGACGTCGAACACCGTGGAATGGGGCATGGCGGAGATGCTCCAGAACAGGGGGACGCTGCGCAAGGTGCGGGAGGAGCTCGACGCGGTGGTGGGGCGCGACGGCGTGGTGGAGGAGAGCCACCTCCCGAAGCTGCACTACCTGAATCTGGTGGTCAAGGAGACGCTCCGGCTGCACCCGGCGCTGCCGCTGATGGTGCCGCACTGCCCCGGCGAGGACGCCACGGTGGGCGGCCACCGCGTCCCGGCGGGCGCCCGGGTGTTCGTCAACGTGTGGGCGATCCAGAGGGACCCGGCGGTGTGGAAGGACCCGGAACACTTCATCCCGGAGAGGTTCTTGCCGGCGGACGGCGGCGGAGGGCGGAGGCTGGACTTCACCGGGAGCGAGCAGGAGTACATGCCGTTCGGGTCCGGGAGGAGGATCTGCGCCGGCGTCGCCATGGCGGAGCGGATGGTGGCCTACTCGCTGGCGATGCTGGTGCAGGCGTTCGACTGGGAGCTGCCGGCCGGCGAGCGGCTGGACCTCGCCGAGCGGTTCGGCATCGTGATGAAGAAGGCCACGCCGCTGGTCGCCGTGCCCACGCCGA GGCTCTCCAACCCTCAGCTCTACTCCGCCTAGATACCAAAGGTTTTAAATCTCGGGCTATAATTGTAGCTAGCTATTCGAAAATGATCTAGCTATTTACTCTCATATGCATTTTAGCTGTTATTTACCGTTTGAGATAATCTACCACAAAATATCTTAGTCTGCTATTTAAAACACTGCTAGATGCTGATGTCACTCCATCAATCAAATACACTCAAGTCAAATGTTAGTGAGAGTTCAGTTATGTTCGGCTCTGTTCATCGGCACGAAACAATTTTTCCGAGCTGGTGTGTTAGCTGGAGAATGTCCATCTATGCTTTCATCTAGGAATGTATACTTAATATATTTTCAGCTAAATATGTATGAAAAGATAATGATATATACTACAAATATTGTGTGTATTGCCGATAAATAAAGGATGGAGATAGAA ] [+] EMBL CB623266 [ TCGCGGTCCGGCGCGGCCGCGGCGCCGGCCTGCCGCCGGGTCCGACGGGGCTGCCGCTCGTCGGCAGCTTGCTGTCCCTCGACCCGGAGCTGCACACCTACTTCGCCGGCCTCGCCGCCAGGTACGGCCCCATCTTCTCTATCCGCCTCGGCTCCAAGCTCGGCGTCGTCGTCACCTCGCCGGCGCTGGCGCGGGAGGTGCTGCGCGACCACGACCTCGTCTTCTCCAACCGCGACACGCCCGACGCCGCGTGCTCCATCTCCTACGGCGGCGGGCAGAACATCGTGTGGAACCCGGTCGGCCCCACGTGGCGCCTCCTCCGCCGCATCTGCGTCCACGAGATGATCGGCCCCGCCGGCCTCGACAGCCTCCACGGCCTCCGCCGCCGGGAGTTCATGGCCACGCTCCGCCACCTGCGCGCGCGGTCCGGCGAGCCCGTCGACGTCGGCGCGCAGATGTTCCTCACCGTGATGAACGTGGTGACCGGCGCGCTGTGGGGCGGCAACGTCGGCAGCGAGAGCGAGCGGACGACGGTGGGGAAGGAGTTCCGGGAGCTCGTCGCCGACATCACCGAGTTGCTCGGCGCGCCCAACGTGTCCGACTTCTTCCCGGCGCTGGCGCCGCTCGACATCCAGGGCATCCGCAACAAGTCCGACCTGCTCAAGGACCGCTTCGACGACATCTTCGCCAGGATCATCCAGAAGAGGACCGAGTCCGACCATGCCGCCGCCGCCGGCGAGACGGCGTCGGACTTCCTCGAGTACA ] [+] EMBL AU174693 [ CGTCGCCATGGCGGAGCGGATGGTGGCCTACTCGCTGGCGATGCTGGTGCAGGCGTTCGACTGGGAGCTGCCGGCCGGCGAGCGGCTGGACCTCGCCGAGCGGTTCGGCATCGTGATGAAGAAGGCCACGCCGCTGGTCGCCGTGCCCACGCCGA GGCTCTCCAACCCTCAGCTCTACTCCGCCTAGATACCAAAGGTTTTAAATCTCGGGCTATAATTGTAGCTAGCTATTCGAAAATGATCTAGCTATTTACTCTCATATGCATTTTAGCTGTTATTTACCGTTTGAGATAATCTACCACAAAATATCTTAGTCTGCTATTTAAAACACTGCTAGATGCTGATGTCACTCCATCAATCAAATACACTCAAGTCAAATGTTAGTGAGAGTTC ] [+] EMBL AU174692 [ GCCACGCCGCTGGTCGCCGTGCCCACGCCGAGGGCTCTCCAACCCTCAGCTCTACTCCGCCTAGATACCAAAGGTTTTAAATCTCGGGCTATAATTGTAGCTAGCTATTCGAAAATGATCTAGCTATTTACTCTCATATGCATTTTAGCTGTTATTTACCGTTTGAGATAATCTACCACAAAATATCTTAGTCTGCTATTTAAAACACTGCTAGATGCTGATGTCACTCCATCAATCAAATACACTCAAGTCAAATGTTAGTGAGAGTTCAGTTATGTTCGGCTCTGTTCATCGGCACGAAACAATTTTTCCGAGCTGGTGTGTTAGCTGGAGAATGTCCATCTATGCTTTCATCTAGGAATGTATACTTAATATATTTTCAGCTAAATATGTATGAAAAGATAATGATATATACTACAAATATTGTGTGTATTGCCGATAAATAAAGGATGGAGATAGAAATTTAAAAAAAA ] [+] EMBL BI801232 [ CTGTTCATCGGCACGAAACAATTTTTCCGAGCTGGTGTGTTAGCTGGAGAATGTCCATCTATGCTTTCATCTAGGAATGTATACTTAATATATTTTCAGCTAAATATGTATGAAAAGATAATGATATATACTACACATATTGTGTGTATTGCCGATAAATAAAGGATGGAGATAGAAATTTACACCCCAAAAAAAAAA] consensusID : consensus_9647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [ACGGGAGCGACAGGANTACNTGCCGNTCGGGTCCGGGAAGAAGATCTGCNCNGGCGTCCCNTGGCGGAACGGATGGTGGCCTACTCNCTGGCGATGCTGGTGCAAGCGTTCGACTGGGAACTGCCGGCCGGCGANCGGCTGGACCTCCCCCAACGGTTCGGCATCGTGATGAAAAAAGGCACGCCGCTGGTCGCCGTGCCCACGCCGANGNTCTCCAACCTCAACTCTACTCCGCCTANATACCAANGTTTTAAATCTCCCGCTATAATTGTTNCCTACTNNNCCAANATGATCTAACTATTACNCNCNTNTGCANTTTAACTGTTATTTACCCGTTTGAAGATTATCTACACNAAATATCTTAATCTGCTATTTAAAACACTGCNNNATCTGATGTCCTCCATCCATCNAATNCCTCCAATGTTAATGAGAATCNATTATGTTCCGCTCTGTTCCTCNGCACNAAACAATTTTCCGAACTGGT] [+] EMBL BE228457 [ACGGGAGCGACAGGANTACNTGCCGNTCGGGTCCGGGAAGAAGATCTGCNCNGGCGTCCCNTGGCGGAACGGATGGTGGCCTACTCNCTGGCGATGCTGGTGCAAGCGTTCGACTGGGAACTGCCGGCCGGCGANCGGCTGGACCTCCCCCAACGGTTCGGCATCGTGATGAAAAAAGGCACGCCGCTGGTCGCCGTGCCCACGCCGANGNTCTCCAACCTCAACTCTACTCCGCCTANATACCAANGTTTTAAATCTCCCGCTATAATTGTTNCCTACTNNNCCAANATGATCTAACTATTACNCNCNTNTGCANTTTAACTGTTATTTACCCGTTTGAAGATTATCTACACNAAATATCTTAATCTGCTATTTAAAACACTGCNNNATCTGATGTCCTCCATCCATCNAATNCCTCCAATGTTAATGAGAATCNATTATGTTCCGCTCTGTTCCTCNGCACNAAACAATTTTCCGAACTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9647#0 CGGCGCTGCTGTACCTCGCCGTCGCGGTCCGGCGCGGCCGCGGCGCCGGCCTGCCGCCGG 60 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 GTCCGACGGGGCTGCCGCTCGTCGGCAGCTTGCTGTCCCTCGACCCGGAGCTGCACACCT 120 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 ACTTCGCCGGCCTCGCCGCCAGGTACGGCCCCATCTTCTCTATCCGCCTCGGCTCCAAGC 180 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 TCGGCGTCGTCGTCACCTCGCCGGCGCTGGCGCGGGAGGTGCTGCGCGACCACGACCTCG 240 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 TCTTCTCCAACCGCGACACGCCCGACGCCGCGTGCTCCATCTCCTACGGCGGCGGGCAGA 300 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 ACATCGTGTGGAACCCGGTCGGCCCCACGTGGCGCCTCCTCCGCCGCATCTGCGTCCACG 360 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 AGATGATCGGCCCCGCCGGCCTCGACAGCCTCCACGGCCTCCGCCGCCGGGAGTTCATGG 420 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 CCACGCTCCACCACCTGCGCGCGCGGTCCGGCGAGCCCGTCAACGTCGGCGCGCAGATGT 480 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 TCCTCACCGTGATGAACGTGGTGACCGGCGCGCTGTGGGGCGGCAACGTCGGCAGCGAGA 540 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 GCGAGCGGACGACGGTGGGGAAGGAGTTCCGGGAGCTCGTCGCCGACATCACCGAGTTGC 600 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 TCGGCGCGCCCAACGTGTCCGACTTCTTCCCGGCGCTGGCGCCGCTCGACATCCAGGGCA 660 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 TCCGCAACAAGTCCGACCTGCTCGAGGACCGCTTCGACGACATCTTCGCCAGGATCATCC 720 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 AGAAGAGGACCGAGTCCGACCATGCCGCCGCCGCCGGCGAGACGGCGTCGGACTTCCTCG 780 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 AGTACATGCTCAAGCTGGAGAAGGAAGGCGGCGACGGGAAGACCGCCTTCACCATGACCA 840 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 ACGTCAAGGCCCTGCTCATGGACATGGTGATCGGGGGGACGGAGACGACGTCGAACACCG 900 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 TGGAATGGGGCATGGCGGAGATGCTCCAGAACAGGGGGACGCTGCGCAAGGTGCGGGAGG 960 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 AGCTCGACGCGGTGGTGGGGCGCGACGGCGTGGTGGAGGAGAGCCACCTCCCGAAGCTGC 1020 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 ACTACCTGAATCTGGTGGTCAAGGAGACGCTCCGGCTGCACCCGGCGCTGCCGCTGATGG 1080 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 TGCCGCACTGCCCCGGCGAGGACGCCACGGTGGGCGGCCACCGCGTCCCGGCGGGCGCCC 1140 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 GGGTGTTCGTCAACGTGTGGGCGATCCAGAGGGACCCGGCGGTGTGGAAGGACCCGGAAC 1200 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 ACTTCATCCCGGAGAGGTTCTTGCCGGCGGACGGCGGCGGAGGGCGGAGGCTGGACTTCA 1260 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 CCGGGAGCGAGCAGGAGTACATGCCGTTCGGGTCCGGGAGGAGGATCTGCGCCGGCGTCG 1320 consensus_9647#1 ACGGGAGCGA-CAGGANTACNTGCCGNTCGGGTCCGGGAAGAAGATCTGCNCNGGCGTC- 58 ********* ***** *** ***** ************ ** ******* * ****** consensus_9647#0 CCATGGCGGAGCGGATGGTGGCCTACTCGCTGGCGATGCTGGTGCAGGCGTTCGACTGGG 1380 consensus_9647#1 CCNTGGCGGAACGGATGGTGGCCTACTCNCTGGCGATGCTGGTGCAAGCGTTCGACTGGG 118 ** ******* ***************** ***************** ************* consensus_9647#0 AGCTGCCGGCCGGCGAGCGGCTGGACCTCGCCGAGCGGTTCGGCATCGTGATGAAGAAGG 1440 consensus_9647#1 AACTGCCGGCCGGCGANCGGCTGGACCTCCCCCAACGGTTCGGCATCGTGATGAAAAAAG 178 * ************** ************ ** * ******************** ** * consensus_9647#0 CCACGCCGCTGGTCGCCGTGCCCACGCCGAGGCTCTCCAACCCTCAGCTCTACTCCGCCT 1500 consensus_9647#1 GCACGCCGCTGGTCGCCGTGCCCACGCCGANGNTCTCCAACC-TCAACTCTACTCCGCCT 237 ***************************** * ********* *** ************* consensus_9647#0 AGATACCAAAGGTTTTAAATCTCGGGCTATAATTGTAGCTAGCTATTCGAAAATGATCTA 1560 consensus_9647#1 ANATACCAANG-TTTTAAATCTCCCGCTATAATTGTTNCCTACTNNNCCAANATGATCTA 296 * ******* * *********** *********** * ** * ** ******** consensus_9647#0 GCTATTTACTCTCATATGCATTTTAGCTGTTATTTACC-GTTTGA-GATAATCTACCACA 1618 consensus_9647#1 ACTATT-ACNCNCNTNTGCANTTTAACTGTTATTTACCCGTTTGAAGATTATCTAC-ACN 354 ***** ** * * * **** **** ************ ****** *** ****** ** consensus_9647#0 AAATATCTTAGTCTGCTATTTAAAACACTGCTAGATGCTGATGTCACTCCATCAATCAAA 1678 consensus_9647#1 AAATATCTTAATCTGCTATTTAAAACACTGCNNNAT-CTGATGTC-CTCCATCCATCNAA 412 ********** ******************** ** ******** ******* *** ** consensus_9647#0 TACACTCAAGTCAAATGTTAGTGAGAGTTCAGTTATGTTCGGCTCTGTTCATCGGCACGA 1738 consensus_9647#1 TNCCTCCAA------TGTTAATGAGAAT-CNATTATGTTCCGCTCTGTTCCTCNGCACNA 465 * * *** ***** ***** * * ******** ********* ** **** * consensus_9647#0 AACAATTTTTCCGAGCTGGTGTGTTAGCTGGAGAATGTCCATCTATGCTTTCATCTAGGA 1798 consensus_9647#1 AACAATTTT-CCGAACTGGT---------------------------------------- 484 ********* **** ***** consensus_9647#0 ATGTATACTTAATATATTTTCAGCTAAATATGTATGAAAAGATAATGATATATACTACAA 1858 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 ATATTGTGTGTATTGCCGATAAATAAAGGATGGAGATAGAAATTTAAAAAAAAAAAAAAA 1918 consensus_9647#1 ------------------------------------------------------------ consensus_9647#0 AA 1920 consensus_9647#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||