cluster # 9657

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9657 cluster # 9657 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9657#0 length = 1070 sequences # 2

consensus_9657#1 length = 330 sequences # 3
consensus_9657#2 length = 104 sequences # 1

consensusID : consensus_9657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1070
fasta sequence

                              [GCCACCCGCGCGGATCGGTCGCTAAGCCGCCGAGAGACATGGCGCCCGCGACACAAATGGCAGCTCCACCACCACGCGCTCGCGGCGGCAGCTTCCGCGTCCTGCGCACCGCCCGCGTCGCGCCGTCGTCGCCCGACGGTGTCCCCATGTTGGTCGAGCGCGCCGTCCCGCTTACCTTCCTGGACGCGATCTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCTTCTATCGCCTCGGCGCCGACGACGACGGCGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGTCCCGGGCGCTCCACGTCGTCTACCCGCTCGCCGGCCGCCTCCGCCTCACGCCGGGCAAGACCAACCGGTACGAGCTCTTCTACCAGCCAGGCGACGCCGTCGCCTTCACCTTCGCCGAGCACGACGACGGCGTCGGTGTCGACGAGCTGGCCGCGGACGACCCGAGGGAGGTCGCCAAGATCGCCCCGCTCGTGCCGGAGCTCCCGGATGGCGGCGCGGTGCTGGCCGTGCAGGCTACCGTGCTGCCCCCCGCGCGCCGCGGCCTCGCCCTCGGCGTCACCGTGCACCACGCCGCCTGCGACGGCTCGAGCTCCACGCACTTCCTCCACACCTGGGCCGCCGCCTGCGCCGGCGCCGCGGTGCTGCCGAAGCCGCCCGTCATCGACCGCACGTTCATCCGCGAACGTGAAGACCTCTATGACTACATGGTCAGTCGAACGGAGGAGTCTGACAAGTTCAGGTCGCCCGACGTCGCCGACAGCAAGCTCCTCGCCACTTTCACGCTGTCAGGAGAGATCCTTCAGAGCATCAAGGACAGAGTCGCCGGCGTGGCGGCGCGGCGCGGCAAGTCGCCGCCTCCTCGGTGCACGTCCGTCGTTGCGACGTTCGCCATCGTATGGCAATGCCACATCCGAGCCGCACTAGGCGACGTCGAAGCAGATAATAAGCACCATGGCCGTGCCCACTTCATCTTCCCCACCGATCACCGGGCGCGGATGGAACCCCGCGTCCCCGACAAGTACCTCGGCAACTGCGTCGGGCCATGCTTCGCCTCGGCG]

[+] EMBL AK103708             [GCCACCCGCGCGGATCGGTCGCTAAGCCGCCGAGAGACATGGCGCCCGCGACACAAATGGCAGCTCCACCACCACGCGCTCGCGGCGGCAGCTTCCGCGTCCTGCGCACCGCCCGCGTCGCGCCGTCGTCGCCCGACGGTGTCCCCATGTTGGTCGAGCGCGCCGTCCCGCTTACCTTCCTGGACGCGATCTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCTTCTATCGCCTCGGCGCCGACGACGACGGCGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGTCCCGGGCGCTCCACGTCGTCTACCCGCTCGCCGGCCGCCTCCGCCTCACGCCGGGCAAGACCAACCGGTACGAGCTCTTCTACCAGCCAGGCGACGCCGTCGCCTTCACCTTCGCCGAGCACGACGACGGCGTCGGTGTCGACGAGCTGGCCGCGGACGACCCGAGGGAGGTCGCCAAGATCGCCCCGCTCGTGCCGGAGCTCCCGGATGGCGGCGCGGTGCTGGCCGTGCAGGCTACCGTGCTGCCCCCCGCGCGCCGCGGCCTCGCCCTCGGCGTCACCGTGCACCACGCCGCCTGCGACGGCTCGAGCTCCACGCACTTCCTCCACACCTGGGCCGCCGCCTGCGCCGGCGCCGCGGTGCTGCCGAAGCCGCCCGTCATCGACCGCACGTTCATCCGCGAACGTGAAGACCTCTATGACTACATGGTCAGTCGAACGGAGGAGTCTGACAAGTTCAGGTCGCCCGACGTCGCCGACAGCAAGCTCCTCGCCACTTTCACGCTGTCAGGAGAGATCCTTCAGAGCATCAAGGACAGAGTCGCCGGCGTGGCGGCGCGGCGCGGCAAGTCGCCGCCTCCTCGGTGCACGTCCGTCGTTGCGACGTTCGCCATCGTATGGCAATGCCACATCCGAGCCGCACTAGGCGACGTCGAAGCAGATAATAAGCACCATGGCCGTGCCCACTTCATCTTCCCCACCGATCACCGGGCGCGGATGGAACCCCGCGTCCCCGACAAGTACCTCGGCAACTGCGTCGGGCCATGCTTCGCCTCGGCG]
[+] EMBL OS0659A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCGTATGGCAATGCCACATCCGAGCCGCACTAGGCGACGTCGAAGCAGATAATAAGCACCATGGCCGTGCCCACTTCATCTTCCCCACCGATCACCGGGCGCGGATGGAACCCCGCGTCCCCGACAAGTACCTCGGCAACTGCGTCGGGCCATGCTTCGCCTCGGCG]




>consensus_9657#0
GCCACCCGCGCGGATCGGTCGCTAAGCCGCCGAGAGACATGGCGCCCGCGACACAAATGG
CAGCTCCACCACCACGCGCTCGCGGCGGCAGCTTCCGCGTCCTGCGCACCGCCCGCGTCG
CGCCGTCGTCGCCCGACGGTGTCCCCATGTTGGTCGAGCGCGCCGTCCCGCTTACCTTCC
TGGACGCGATCTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCTTCTATCGCCTCGGCG
CCGACGACGACGGCGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGTCCCGGGCGC
TCCACGTCGTCTACCCGCTCGCCGGCCGCCTCCGCCTCACGCCGGGCAAGACCAACCGGT
ACGAGCTCTTCTACCAGCCAGGCGACGCCGTCGCCTTCACCTTCGCCGAGCACGACGACG
GCGTCGGTGTCGACGAGCTGGCCGCGGACGACCCGAGGGAGGTCGCCAAGATCGCCCCGC
TCGTGCCGGAGCTCCCGGATGGCGGCGCGGTGCTGGCCGTGCAGGCTACCGTGCTGCCCC
CCGCGCGCCGCGGCCTCGCCCTCGGCGTCACCGTGCACCACGCCGCCTGCGACGGCTCGA
GCTCCACGCACTTCCTCCACACCTGGGCCGCCGCCTGCGCCGGCGCCGCGGTGCTGCCGA
AGCCGCCCGTCATCGACCGCACGTTCATCCGCGAACGTGAAGACCTCTATGACTACATGG
TCAGTCGAACGGAGGAGTCTGACAAGTTCAGGTCGCCCGACGTCGCCGACAGCAAGCTCC
TCGCCACTTTCACGCTGTCAGGAGAGATCCTTCAGAGCATCAAGGACAGAGTCGCCGGCG
TGGCGGCGCGGCGCGGCAAGTCGCCGCCTCCTCGGTGCACGTCCGTCGTTGCGACGTTCG
CCATCGTATGGCAATGCCACATCCGAGCCGCACTAGGCGACGTCGAAGCAGATAATAAGC
ACCATGGCCGTGCCCACTTCATCTTCCCCACCGATCACCGGGCGCGGATGGAACCCCGCG
TCCCCGACAAGTACCTCGGCAACTGCGTCGGGCCATGCTTCGCCTCGGCG

consensusID : consensus_9657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 330
fasta sequence

                              [AGCTCGCTCGCTAGCCGGGAGACATGGCGCCCGCGACACAAATGGCAGCTCCACCACCTCGCGGCGGCAG-TTCCGCGTCCTGCGCACCGCTCGCGTCGCACCGTCGTCGCCCGACGGTGTCCCCTCGCTGCGCCA-CGTGCCGTCCCGCTCACCTTCCTGGACGCGATGTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCCTCTACCGCCTCGGCGCCGC-CGACGACGACGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGTCCCGGGTGCTCCACGTCTTCTACCCGC-TCGCCGGNCGGCTTCGGCTNAATTCCGGCAAATAT]

[+] EMBL AU181251             [AGCTCGCTCGCTAGCCGGGAGACATGGCGCCCGCGACACAAATGGCAGCTCCACCACCTCGCGGCGGCAGCTTCCGCGTCCTGCGCACCGCTCGCGTCGCACCGTCGTCGCCCGACGGTGTCCCCTCGCTGCGCCAGCGTGCCGTCCCGCTCACCTTCCTGGACGCGATGTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCCTCTACCGCCTCGGCGCCGC CGACGACGACGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGTCCCGGGTGCTCCACGTCTTCTACCCGC TCGCCG                             ]
[+] EMBL C26341               [       TCGCTAGCCGGGAGACATGGCGCCCGCGACACAAATNGCAGCTCCACCACCTCGNGGCGGCAG TTCCGCGTNCTGCGCACCGCTCGCGTNGCACCNTCNTNNCCCNACGGTGTCCCCTCGNTGCGCCA  GTGCCGTCCCGCTCACCTTCCTGGACGCGATGTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCCTCTACCGCCTCGG GCCGCACG  GACGACGT GACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGTCCCGGGTNCTCCACGTCTTCTACCCGN TCG                                ]
[+] EMBL C28305               [         GCTAGCCGGGAGACATGGCGCCCGCAACACAAATGGCAGCTCCACCACCTCGCGGCGGCAG TTCCGCGTCCTGCGCACCGCTCGCNTCGCACCGTCGTCGCCCGACGGTGTCCCCTCGCTGCGCCA CNTGCCGTCCCGCTCACCTTCCTGGACGCNATGTGGCTCCCGACCCCGCCCGTNGACCGGGTCTTCCTCTACCGCCTCGGCGCCG  CGACGACGACGTGAACGCCGTCCTGTCCCGGCTGGCTGANTCGCTGTCCCGGGTGCTTCANGTCTTCTAACCGCTTCGCCGGNCGGCTTCGGCTNAATTCCGGCAAATAT]




>consensus_9657#1
AGCTCGCTCGCTAGCCGGGAGACATGGCGCCCGCGACACAAATGGCAGCTCCACCACCTC
GCGGCGGCAGTTCCGCGTCCTGCGCACCGCTCGCGTCGCACCGTCGTCGCCCGACGGTGT
CCCCTCGCTGCGCCACGTGCCGTCCCGCTCACCTTCCTGGACGCGATGTGGCTCCCGACC
CCGCCCGTCGACCGGGTCTTCCTCTACCGCCTCGGCGCCGCCGACGACGACGTCGACGCC
GTCCTGTCCCGGCTGGCTGACTCGCTGTCCCGGGTGCTCCACGTCTTCTACCCGCTCGCC
GGNCGGCTTCGGCTNAATTCCGGCAAATAT

consensusID : consensus_9657#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 104
fasta sequence

                              [CATTCCCCAGCCACCCGCGCGGTCNAAACGCTAAGCCGCCGAGAGACATGGCGCCCGCAGCACAAATGGCAGCTCCACCACCANAGACNCACGGCGTCAGATTN]

[+] EMBL D42807               [CATTCCCCAGCCACCCGCGCGGTCNAAACGCTAAGCCGCCGAGAGACATGGCGCCCGCAGCACAAATGGCAGCTCCACCACCANAGACNCACGGCGTCAGATTN]




>consensus_9657#2
CATTCCCCAGCCACCCGCGCGGTCNAAACGCTAAGCCGCCGAGAGACATGGCGCCCGCAG
CACAAATGGCAGCTCCACCACCANAGACNCACGGCGTCAGATTN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9657#0      ---------GCCACCCGCGCGGATCGGTCGCTAAGCCGCCGAGAGACATGGCGCCCGCGA 51
consensus_9657#1      --------------------AGCTCGCTCGCTA----GCCGGGAGACATGGCGCCCGCGA 36
consensus_9657#2      CATTCCCCAGCCACCCGCGCGGTCNAAACGCTAAGCCGCCGAGAGACATGGCGCCCGCAG 60
                                           *      *****    **** ****************  

consensus_9657#0      CACAAATGGCAGCTCCACCACCACGCGCTCGCGGCGGCAGCTTCCGCGTCCTGCGCACCG 111
consensus_9657#1      CACAAATGGCAGCTCCACCACC------TCGCGGCGGCAG-TTCCGCGTCCTGCGCACCG 89
consensus_9657#2      CACAAATGGCAGCTCCACCACCANAGACNCACGGCGTCAGATTN---------------- 104
                      **********************       * ***** *** **                 

consensus_9657#0      CCCGCGTCGCGCCGTCGTCGCCCGACGGTGTCCCCATGTTGGTCGAGCGCGCCGTCCCGC 171
consensus_9657#1      CTCGCGTCGCACCGTCGTCGCCCGACGGTGTCCCCTCGCTGCGCCA-CGTGCCGTCCCGC 148
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      TTACCTTCCTGGACGCGATCTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCTTCTATC 231
consensus_9657#1      TCACCTTCCTGGACGCGATGTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCCTCTACC 208
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      GCCTCGGCGCCGACGACGACGGCGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGT 291
consensus_9657#1      GCCTCGGCGCCGCCGACGACGACGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGT 268
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      CCCGGGCGCTCCACGTCGTCTACCCGCTCGCCGGCCGCCTCCGCCTCACGCCGGGCAAGA 351
consensus_9657#1      CCCGGGTGCTCCACGTCTTCTACCCGCTCGCCGGNCGGCTTCGGCTNAATTCCGGCAAAT 328
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      CCAACCGGTACGAGCTCTTCTACCAGCCAGGCGACGCCGTCGCCTTCACCTTCGCCGAGC 411
consensus_9657#1      AT---------------------------------------------------------- 330
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      ACGACGACGGCGTCGGTGTCGACGAGCTGGCCGCGGACGACCCGAGGGAGGTCGCCAAGA 471
consensus_9657#1      ------------------------------------------------------------
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      TCGCCCCGCTCGTGCCGGAGCTCCCGGATGGCGGCGCGGTGCTGGCCGTGCAGGCTACCG 531
consensus_9657#1      ------------------------------------------------------------
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      TGCTGCCCCCCGCGCGCCGCGGCCTCGCCCTCGGCGTCACCGTGCACCACGCCGCCTGCG 591
consensus_9657#1      ------------------------------------------------------------
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      ACGGCTCGAGCTCCACGCACTTCCTCCACACCTGGGCCGCCGCCTGCGCCGGCGCCGCGG 651
consensus_9657#1      ------------------------------------------------------------
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      TGCTGCCGAAGCCGCCCGTCATCGACCGCACGTTCATCCGCGAACGTGAAGACCTCTATG 711
consensus_9657#1      ------------------------------------------------------------
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      ACTACATGGTCAGTCGAACGGAGGAGTCTGACAAGTTCAGGTCGCCCGACGTCGCCGACA 771
consensus_9657#1      ------------------------------------------------------------
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      GCAAGCTCCTCGCCACTTTCACGCTGTCAGGAGAGATCCTTCAGAGCATCAAGGACAGAG 831
consensus_9657#1      ------------------------------------------------------------
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      TCGCCGGCGTGGCGGCGCGGCGCGGCAAGTCGCCGCCTCCTCGGTGCACGTCCGTCGTTG 891
consensus_9657#1      ------------------------------------------------------------
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      CGACGTTCGCCATCGTATGGCAATGCCACATCCGAGCCGCACTAGGCGACGTCGAAGCAG 951
consensus_9657#1      ------------------------------------------------------------
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      ATAATAAGCACCATGGCCGTGCCCACTTCATCTTCCCCACCGATCACCGGGCGCGGATGG 1011
consensus_9657#1      ------------------------------------------------------------
consensus_9657#2      ------------------------------------------------------------
                                                                                  

consensus_9657#0      AACCCCGCGTCCCCGACAAGTACCTCGGCAACTGCGTCGGGCCATGCTTCGCCTCGGCG 1070
consensus_9657#1      -----------------------------------------------------------
consensus_9657#2      -----------------------------------------------------------