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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 988 fasta sequence
[GTGCTGTGCTGCTAGGGTTTAGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCTTTCCGATTCCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCCTACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCCTCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACCACCGTGGAGCGGCTGCGGCCCCAGAGCCACGGCCACACCCTCACCGCCCGCGTCCTCTCCGCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTGGCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAGACAACAACGTGTCGCTGGTCGAGTATGAGCTGGTGGATGTCGTCGACGAGGATTGACTACTTAGACTTTGATTGGCTCTCGGGCTGTGGACATAGATTTTTGATGCAGCGGTAGCAGTAGGTTCATCTTATCCTGGAAAGCTATTGAAAAGATTTGGAGCTGGTTATTACTTATGTACAGGGGAAGGTTCAACTGATGCTTTTGTGCAAGACCTGTTCTATCATTAGGTTTGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACCTAAATCTAAATGTTGGCAAGCCTAGTGGACTTGTTTCTGTCAATTTAATGGTATGGAGTTGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGGATGTCTTACTACACCTTGTTGTGAGCTGCAATGTTTGCGTGCATGTTTAACAAAGCTGTGTTATATGTGT]
[+] EMBL AK071627 [GTGCTGTGCTGCTAGGGTTTAGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCTTTCCGATTCCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCCTACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCCTCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACCACCGTGGAGCGGCTGCGGCCCCAGAGCCACGGCCACACCCTCACCGCCCGCGTCCTCTCCGCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTGGCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAGACAACAACGTGTCGCTGGTCGAGTATGAGCTGGTGGATGTCGTCGACGAGGATTGACTACTTAGACTTTGATTGGCTCTCGGGCTGTGGACATAGATTTTTGATGCAGCGGTAGCAGTAGGTTCATCTTATCCTGGAAAGCTATTGAAAAGATTTGGAGCTGGTTATTACTTATGTACAGGGGAAGGTTCAACTGATGCTTTTGTGCAAGACCTGTTCTATCATTAGGTTTGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACCTAAATCTAAATGTTGGCAAGCCTAGTGGACTTGTTTCTGTCAATTTAATGGTATGGAGTTGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGGATGTCTTACTACACCTTGTTGTGAGCTGCAATGTTTGCGTGCATGTTTAACAAAGCTGTGTTATATGTG ]
[+] EMBL AU181579 [ GGCGGCGGCGGCTGCGGCTTTCCGATTCCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCCTACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCCTCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACCACCGTGGAGCGGCTGCGGCCCCAGAGCCACGGCCACACCCTCACCGCCCGCGTCCTCTCCGCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCT ]
[+] EMBL CA767130 [ GCTGGCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAGACAACAACGTGTCGCTGGTCGAGTATGAGCTGGTGGATGTCGTCGACGAGGATTGACTACTTAGACTTTGATTGGCTCTCGGGCTGTGGACATAGATTTTTGATGCAGCGGTAGCAGTAGGTTCATCTTATCCTGGAAAGCTATTGAAAAGATTTGGAGCTGGTTATTACTTATGTACAGGGGAAGGTTCAACTGATGCTTTTGTGCAAGACCTGTTCTATCATTAGGTTAGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACCTAAATCTAAATGTTGGCAAGCCTAGTGGACTTGTTTCTGTCAATTTAATGGTATGGAGTTGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGGATGTCTTA ]
[+] EMBL CA764109 [ TTCTGTCAATTTAATGGTATGGAGTTGGATCTTGTGTCGCTGATGGTTCTACATATACGATAAAGAATATTTCTGGGATGTCTTACTACACCTTGTTGTGAGCTGCAATGTTTGCGTGCATGTTTAACAAAGCTGTGTTATATGTGT]
consensusID : consensus_9662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence
[TGCTGTGCTGCTAGGGTTTAGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCTTTCCGATTCCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCCTACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCCTCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACCACACCCTCACCGCCCGCGTCCTCTCCGCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTGGCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAGACAACAACGTGTCGCTGGTCGAGTATGAGCTGGTGGATGTCGTCGACGAGGATTGACTACTTAGACTTTGATTGGCTCTCGGGCTGTGGACATAGATTTTTGATGCAGCGGTAGCAGTAGGTTCATCTTATCCTGGAAAGCTATTGAAAAGATTTGGAGCTGGTTATTACTTATGTACAGGGGAAGGTTCAACTGATGCTTTTGTGCAAGACCTGTTCTATCATTAGGTTTGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACCTAAATCTAAATGTTGGCAAGCCTAGTGGACTTGTTTCTGTCAATTTAATGGTATGGAGTTGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGG]
[+] EMBL AK067021 [TGCTGTGCTGCTAGGGTTTAGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCTTTCCGATTCCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCCTACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCCTCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACCACACCCTCACCGCCCGCGTCCTCTCCGCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTGGCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAGACAACAACGTGTCGCTGGTCGAGTATGAGCTGGTGGATGTCGTCGACGAGGATTGACTACTTAGACTTTGATTGGCTCTCGGGCTGTGGACATAGATTTTTGATGCAGCGGTAGCAGTAGGTTCATCTTATCCTGGAAAGCTATTGAAAAGATTTGGAGCTGGTTATTACTTATGTACAGGGGAAGGTTCAACTGATGCTTTTGTGCAAGACCTGTTCTATCATTAGGTTTGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACCTAAATCTAAATGTTGGCAAGCCTAGTGGACTTGTTTCTGTCAATTTAATGGTATGGAGTTGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGG]
consensusID : consensus_9662#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence
[CCGCCCGCGTCCTTTCCCCCGCATCATCTCGACACCCTCCTCCCCGCGCTCGTCTCGCTGAGTCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTGGCAGTTGACAAATGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAAGACAACAACGGTGTCGCTGGTCGAGTTATGAGCTGGTGGAATGTTCGTCGACCGAGGGATTGACTACTTTAGACTTTGATTTGGCTTCTCGGGCTGTGGAACATTAAGATTTTTGAAGCCACCGTTAACCACTTAAGGTTCAATCTTTATGTCCTTGGGAAAGCCTTAATTGGAAAAATTTGGAACTTGGTTTAATACCTAAGTAATAAGGGAAAGTGTCCACTTGAAGCCTTTGGGCCAAGACCCGGTTTAACCATTAAGTTTGGTTTAATGAAAGTGAATTCCCGTTGTACCTAATTTAAATGGCCAACCTTATGGACCTGGTTTCAGGCCAATTAAGGTAATGAATTTGATTCTTGGCCA]
[+] EMBL BI800149 [CCGCCCGCGTCCTTTCCCCCGCATCATCTCGACACCCTCCTCCCCGCGCTCGTCTCGCTGAGTCCTCGTCGGCGACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCAGGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTGGCAGTTGACAAATGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAAAGACAACAACGGTGTCGCTGGTCGAGTTATGAGCTGGTGGAATGTTCGTCGACCGAGGGATTGACTACTTTAGACTTTGATTTGGCTTCTCGGGCTGTGGAACATTAAGATTTTTGAAGCCACCGTTAACCACTTAAGGTTCAATCTTTATGTCCTTGGGAAAGCCTTAATTGGAAAAATTTGGAACTTGGTTTAATACCTAAGTAATAAGGGAAAGTGTCCACTTGAAGCCTTTGGGCCAAGACCCGGTTTAACCATTAAGTTTGGTTTAATGAAAGTGAATTCCCGTTGTACCTAATTTAAATGGCCAACCTTATGGACCTGGTTTCAGGCCAATTAAGGTAATGAATTTGATTCTTGGCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9662#0 GTGCTGTGCTGCTAGGGTTTAGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCTTTCCGATT 60
consensus_9662#1 -TGCTGTGCTGCTAGGGTTTAGGCGGCGGCGGCGGCGGCGGCGGCTGCGGCTTTCCGATT 59
consensus_9662#2 ------------------------------------------------------------
consensus_9662#0 CCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCC 120
consensus_9662#1 CCAATCCAACAAGAAGAAGATTCGGAGAGATTGCCGGCCATGTCTTCCACCGGTCGCCCC 119
consensus_9662#2 ------------------------------------------------------------
consensus_9662#0 TACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCC 180
consensus_9662#1 TACGGCCGTCGCGGCGGCGCCGCTCCCTCCTACGTGCCGCGCCCCCGCGCACCCAACCCC 179
consensus_9662#2 ------------------------------------------------------------
consensus_9662#0 TCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACC 240
consensus_9662#1 TCGCCATCCGCTCCCGCTCCCGCACGGCCGCCGCAGCAACTGCGTAAACCGGTGTTCACC 239
consensus_9662#2 ------------------------------------------------------------
consensus_9662#0 ACCGTGGAGCGGCTGCGGCCCCAGAGCCACGGCCACACCCTCACCGCCCGCGTCCTCTCC 300
consensus_9662#1 AC----------------------------------ACCCTCACCGCCCGCGTCCTCTCC 265
consensus_9662#2 -------------------------------------------CCGCCCGCGTCCTTTCC 17
************* ***
consensus_9662#0 GCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGC 360
consensus_9662#1 GCCCGCATCATCCTCGACAACCCTCCTCCCCGCGCTCGTCTCGCTGAGTGCCTCGTCGGC 325
consensus_9662#2 -CCCGCATCATC-TCGACA-CCCTCCTCCCCGCGCTCGTCTCGCTGAGT-CCTCGTCGGC 73
*********** ****** ***************************** **********
consensus_9662#0 GACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCA 420
consensus_9662#1 GACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCA 385
consensus_9662#2 GACAACACCGGCACCGTCCTCTTCACCGCCCGCAACCAACAAGTTGACTTGGTGAAGCCA 133
************************************************************
consensus_9662#0 GGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTG 480
consensus_9662#1 GGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTG 445
consensus_9662#2 GGCACCACGGTCATCTTCCGCAATGCCAAGATTGACATGTTCAAGGGGACCATGAGGCTG 193
************************************************************
consensus_9662#0 GCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAA 540
consensus_9662#1 GCAGTTGACAAATGGGGCCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAA 505
consensus_9662#2 GCAGTTGACAAATGGG-CCGGATCGAGGTGACGGACCCTGCCAGCTTTCAAGTTAAGGAA 252
**************** *******************************************
consensus_9662#0 -GACAACAACG-TGTCGCTGGTCGAGT-ATGAGCTGGTGGA-TGT-CGTCGAC--GAGGA 593
consensus_9662#1 -GACAACAACG-TGTCGCTGGTCGAGT-ATGAGCTGGTGGA-TGT-CGTCGAC--GAGGA 558
consensus_9662#2 AGACAACAACGGTGTCGCTGGTCGAGTTATGAGCTGGTGGAATGTTCGTCGACCGAGGGA 312
********** *************** ************* *** ******* ***
consensus_9662#0 TTGACTACTT-AGACTTTGATTGG--CTCTCGGGCTGTGGA-CAT--AGATTTTTGATGC 647
consensus_9662#1 TTGACTACTT-AGACTTTGATTGG--CTCTCGGGCTGTGGA-CAT--AGATTTTTGATGC 612
consensus_9662#2 TTGACTACTTTAGACTTTGATTTGGCTTCTCGGGCTGTGGAACATTAAGATTTTTGAAGC 372
********** *********** * ************** *** ********** **
consensus_9662#0 AGCGGT--AGCAGT--AGGTTCA----TCTTATCCT--GGAAAGCT---ATTGAAAAGAT 694
consensus_9662#1 AGCGGT--AGCAGT--AGGTTCA----TCTTATCCT--GGAAAGCT---ATTGAAAAGAT 659
consensus_9662#2 CACCGTTAACCACTTAAGGTTCAATCTTTATGTCCTTGGGAAAGCCTTAATTGGAAAAAT 432
* ** * ** * ******* * * **** ******* **** *** **
consensus_9662#0 TTGGAGCTGG--TTATTACTTATGTA-CAGGGGAAGGT--TCAACTGATGCTTTTGTGC- 748
consensus_9662#1 TTGGAGCTGG--TTATTACTTATGTA-CAGGGGAAGGT--TCAACTGATGCTTTTGTGC- 713
consensus_9662#2 TTGGAACTTGGTTTAATACCTAAGTAATAAGGGAAAGTGTCCACTTGAAGCCTTTGGGCC 492
***** ** * *** *** ** *** * ***** ** ** *** ** **** **
consensus_9662#0 AAGACCTGTTCTA-TCATTAGGTTTGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACC 807
consensus_9662#1 AAGACCTGTTCTA-TCATTAGGTTTGGTTTATGAAATGTGTTGATGTTGCCGGTGGTACC 772
consensus_9662#2 AAGACCCGGTTTAACCATTAAGTTTGGTTTAATGAAAGTG-----AATTCCCGTTGTACC 547
****** * * ** ***** ********** ** *** * ** ** *****
consensus_9662#0 TAAATCTAAATGTTGGCAAGCCTAGTGGACTTG-TTTCTGTCAATTTAATGGTATGGAGT 866
consensus_9662#1 TAAATCTAAATGTTGGCAAGCCTAGTGGACTTG-TTTCTGTCAATTTAATGGTATGGAGT 831
consensus_9662#2 TAA-TTTAAAT---GGCCAACCTTATGGACCTGGTTTCAGGCCAATTAAGGTAATGAATT 603
*** * ***** *** * *** ***** ** **** * * * **** * *** * *
consensus_9662#0 TGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGGATGTCTTA 926
consensus_9662#1 TGGATCTTGTGTCGCTGATGGTTCTACATATACGATGAAGAATATTTCTGGG-------- 883
consensus_9662#2 TGATTCTTG-GCCA---------------------------------------------- 616
** ***** * *
consensus_9662#0 CTACACCTTGTTGTGAGCTGCAATGTTTGCGTGCATGTTTAACAAAGCTGTGTTATATGT 986
consensus_9662#1 ------------------------------------------------------------
consensus_9662#2 ------------------------------------------------------------
consensus_9662#0 GT 988
consensus_9662#1 --
consensus_9662#2 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||