These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 845 fasta sequence [TATCTCTCTCTCCTTCCTCCCCACACCTCTGCGGCTCTGGACCTCTCCACTCCCTCTCGCCGCCGCCGCCGCCGCCGCCGATCTGCCGCGCAATCCGGAGTCGCCACCCACCGTACCTCCCCGCGCGGCAGCATCCTTCCTCGCGCCGCGCGCGCGGCCGGCGAGAAGGTTTCGAGGCGGGGACGGAACGACGCGGCGGCCGTGGAGCTCGGTTCCACCTGCATCCATCTCGGTGGGGTTGGTGAAGTGGGGGGGCGAGGCGGCCGGGGATGGATAAGCTGGTGCAGTTCGGGAGGAAGGCGTGGTTCGTGGTGCGGGTGCTGTCCGGGTACGAGGAGAGGAGGATCCGTGCTCACAGGCTGCAGATGCAGCAGCGGATCGCGAGGGCCCAAGCTAAGAAGGAAGAGCTTCGGAAGCAGCCAGAACAAATTATTCTATCAGAAGTTCGTCAAATGGTTCAGCAGATGCAAGCCCTCAATCAGCAGCTTGAAGAAGCTGAAACCGCCATAGATGAATATTTCAAACCAATCGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAGAGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGCTGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTTTTTTGTAAACAAGTATTATATGCCAGTGGATTCTTTACATAGGCTTTGCTGGGCTAGGCAATAATAAGTATGGATG] [+] EMBL AK068094 [TATCTCTCTCTCCTTCCTCCCCACACCTCTGCGGCTCTGGACCTCTCCACTCCCTCTCGCCGCCGCCGCCGCCGCCGCCGATCTGCCGCGCAATCCGGAGTCGCCACCCACCGTACCTCCCCGCGCGGCAGCATCCTTCCTCGCGCCGCGCGCGCGGCCGGCGAGAAGGTTTCGAGGCGGGGACGGAACGACGCGGCGGCCGTGGAGCTCGGTTCCACCTGCATCCATCTCGGTGGGGTTGGTGAAGTGGGGGGGCGAGGCGGCCGGGGATGGATAAGCTGGTGCAGTTCGGGAGGAAGGCGTGGTTCGTGGTGCGGGTGCTGTCCGGGTACGAGGAGAGGAGGATCCGTGCTCACAGGCTGCAGATGCAGCAGCGGATCGCGAGGGCCCAAGCTAAGAAGGAAGAGCTTCGGAAGCAGCCAGAACAAATTATTCTATCAGAAGTTCGTCAAATGGTTCAGCAGATGCAAGCCCTCAATCAGCAGCTTGAAGAAGCTGAAACCGCCATAGATGAATATTTCAAACCAATCGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAGAGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGCTGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTTTTTTGTAAACAAGTATTATATGCCAGTGGATTCTTTACATAGGCTTTGCTGGGCTAGGCAATAATAAGTATGGATG] [+] EMBL AU181790 [ CTCTCGCCGCCGCCGCCGCCGCCGCCGATCTGCCGCGCAATCCGGAGTCGCCACCCACCGTACCTCCCCGCGCGGCAGCATCCTTCCTCGCGCCGCGCGCGCGGCCGGCGAGAAGGTTTCGAGGCGGGGACGGAACGACGCGGCGGCCGTGGAGCTCGGTTCCACCTGCATCCATCTCGGTGGGGTTGGTGAAGTGGGGGGGCGAGGCGGCCGGGGATGGATAAGCTGGTGCAGTTCGGGAGGAAGGCGTGGTTCGTGGTGCGGGTGCTGTCCGGGTACGAGGAGAGGAGGATCCGTGCTCACAGGCTGCAGATGCAGCAGCGGATCGCGAGGGCCCAAGCTAAGAAGGAAGAGCTTCGGAAGCAGCCAGAACAAATTATTCTATCAGAAGTTCGTCAAATGGTTCAGCAGATGCAAGCCCTCAATCAG ] consensusID : consensus_9663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 671 fasta sequence [TAAGACATCCTGCCACAAAATAAAATTACCAAATCGATGTCTCAATGCCTGCATAGGAAATGTGTACTGTTGTTTTGAGAAAGAACATGTTAGTTTATGAACCATCTCACAACTTGAATCATGAATAATGCTTCAAGTTACCCCTGTGTACCTGACAGTAAGAGGTGGATTAGCCATCATGCTGTTGTATTATGAAGGACACCGTATCTTCTATGGTTTAATTGATTGTTTGGTTTACGTATTTGCCATGATTTTATAGGATGGAAATTTAGGTGTAACAGAATCAGACATGTTATTTACTTCTATGATATGCTTTTTTTTTTAATGTTTCTGGACCTTACATGCTAACTTATCCTCCATCCTATTTCACAGGAAACCGCCATAGATGAATATTTCAAACCAATCGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAGAGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGCTGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTTTTTGTAAACAAGTATTATATGCCAGTG] [-] EMBL CA998430 [TAAGACATCCTGCCACAAAATAAAATTACCAAATCGATGTCTCAATGCCTGCATAGGAAATGTGTACTGTTGTTTTGAGAAAGAACATGTTAGTTTATGAACCATCTCACAACTTGAATCATGAATAATGCTTCAAGTTACCCCTGTGTACCTGACAGTAAGAGGTGGATTAGCCATCATGCTGTTGTATTATGAAGGACACCGTATCTTCTATGGTTTAATTGATTGTTTGGTTTACGTATTTGCCATGATTTTATAGGATGGAAATTTAGGTGTAACAGAATCAGACATGTTATTTACTTCTATGATATGCTTTTTTTTTTAATGTTTCTGGACCTTACATGCTAACTTATCCTCCATCCTATTTCACAGGAAACCGCCATAGATGAATATTTCAAACCAATCGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAGAGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGCTGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTTTTTGTAAACAAGTATTATATGCCAGT ] [-] EMBL CB000456 [ TGGATTAGCCATCACGCTGGTGTATTATGAAGGACACCGTATATTCTATGGTATAATTGATTGTTTGGTTTACGTATTTGCCATGATTTTATAGGATGGAAATTTAGGTGTAACAGAATCAGACATGTTATTTACTTCTATGATATGCTTTTTTTTTTAATGTTTCTGGACCTTACAAAATAACTTATCCTCCATCCTATTTCACAGGAAACCGCCATAGATGAATATTTCAAACCAATCGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAGAGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACCCGATTGCTGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTA AGGGTTTTTTTTGTAAACAAGTATTATATGCCAGTG] consensusID : consensus_9663#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 616 fasta sequence [CACAGGCTGCAGATGCAGCAGCAGATCGCGAGGGCCCAAGCTAAGAAGGAAGAGCTTCGGAAGCAGCCAGAACAAATTATTTTATCAGAGGTTCGTCAAATGGTGCAGCAGATGCAAGCCCTCAATCAGCAGCTTGAAGAAACTGAAACCGCCATAGATGAGTATTTCAAACCAATCGATAAGAATGCTAAGATCATAACGGACATGCACCCGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATTGCAAGTAAGAGAGCTCAGGCCCCTGCCATAGAGTTTAAAGACACCCAAACGAGTGACAAGATTGCTGAAGGCCCTCCGAAAGAAGAAACCATGAAATAAGTACGGTTCATTGTTAGTCTATTTATTGTAAACAAGTATTATGTGCAAATGGATTCTTTACATAGGCTTTGGTGGGCTAGGCAATAAGTATGGATGCATGGGAGGACAGTTGCCATTTTTTGTCACTAACAGGAGGCTATCCTTTTTTTTGGCAGAGCTCTAACTAGTAACTAGTGTGCTTTACTATTCAAGATTGTGAAATCATGGAACATTTGTTCAATGTGATTGGGCC] [-] EMBL CB682854 [CACAGGCTGCAGATGCAGCAGCAGATCGCGAGGGCCCAAGCTAAGAAGGAAGAGCTTCGGAAGCAGCCAGAACAAATTATTTTATCAGAGGTTCGTCAAATGGTGCAGCAGATGCAAGCCCTCAATCAGCAGCTTGAAGAAACTGAAACCGCCATAGATGAGTATTTCAAACCAATCGATAAGAATGCTAAGATCATAACGGACATGCACCCGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATTGCAAGTAAGAGAGCTCAGGCCCCTGCCATAGAGTTTAAAGACACCCAAACGAGTGACAAGATTGCTGAAGGCCCTCCGAAAGAAGAAACCATGAAATAAGTACGGTTCATTGTTAGTCTATTTATTGTAAACAAGTATTATGTGCAAATGGATTCTTTACATAGGCTTTGGTGGGCTAGGCAATAAGTATGGATGCATGGGAGGACAGTTGCCATTTTTTGTCACTAACAGGAGGCTATCCTTTTTTTTGGCAGAGCTCTAACTAGTAACTAGTGTGCTTTACTATTCAAGATTGTGAAATCATGGAACATTTGTTCAATGTGATTGGGCC] [+] EMBL CB682853 [ GCAGACTTAGCAGCAGATCGCGAGGGCCCAAGCTAAGAAGGAAGAGCTTCGGAAGCAGCCAGAACAAATTATTCTATCAGAGGTTCGTCAAATGGTGCAGCAGATGCAAGCCCTCAATCAGCAGCTTGAAGAAACTGAAACCGCCATAGATGAGTATTTCAAACCAATCGATAAGAATGCTAAGATCATAACGGACATGCAACCGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATTGCAAGTAAGAGAGCTCAGGCCACTGCCATAGAGTCTAAAGACACCCAAACGAGTGACAAGATTGCTGAAGGCCCTCCGAAAGAAGAAACCATGAAATAAGTACGGTTCATTGTTAGTCTATTTATTGTAAACAAGTATTATGTGCAAATGGATTCTTTACATAGGCTTTGGTGGGCTAGGCAATAAGTATGGATGCATGGGAGGACAGTTGCCATTTTTTGTCACTAACAGGAGGCTATCCTTTTCTCTGGCAGAGCTCTAACTAGTAACTAGTGTGCTTTACTATTCAAGATTGTGAAATCATGGAACATTTGTTCAATGTGATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9663#0 TATCTCTCTCTCCTTCCTCCCCACACCTCTGCGGCTCTGGACCTCTCCACTCCCTCTCGC 60 consensus_9663#2 ------------------------------------------------------------ consensus_9663#1 ------------------------------------------------------------ consensus_9663#0 CGCCGCCGCCGCCGCCGCCGATCTGCCGCGCAATCCGGAGTCGCCACCCACCGTACCTCC 120 consensus_9663#2 ------------------------------------------------------------ consensus_9663#1 ------------------------------------------------------------ consensus_9663#0 CCGCGCGGCAGCATCCTTCCTCGCGCCGCGCGCGCGGCCGGCGAGAAGGTTTCGAGGCGG 180 consensus_9663#2 ------------------------------------------------------------ consensus_9663#1 ----------TAAGACATCCTGCCACAAAATAAAATTACCAAATCGATGTCTCAATGCCT 50 consensus_9663#0 GGACGGAACGACGCGGCGGCCGTGGAGCTCGGTTCCACCTGCATCCATCTCGGTGGGGTT 240 consensus_9663#2 ------------------------------------------------------------ consensus_9663#1 GCATAGGAAATGTGTACTGTTGTTTTGAGAAAGAACATGTTAGTTTAT------GAACCA 104 consensus_9663#0 GGTGAAGTGGGGGGGCGAGGCGGCCGGGGATGGATAAGCTGGTGCAGTTCGGGAGGAAGG 300 consensus_9663#2 ------------------------------------------------------------ consensus_9663#1 TCTCACAACTTGAATCATGAATAATGCTTCAAGTTACCCCTGTGTACCTGACAGTAAGAG 164 consensus_9663#0 CGTGGTTCGTGGTGCGGGTGCTGTCCGGGTACGAGGAGAGGAGGATCCGTGCTC--ACAG 358 consensus_9663#2 -----------------------------------------------------C--ACAG 5 consensus_9663#1 GTGGATTAGCCATCATGCTGTTGTATTATGAAGGACACCGTATCTTCTATGGTTTAATTG 224 * * consensus_9663#0 GCTGCA-GATGCAGCAGCGGATCGCGAGGGCCCAAGCTAAGAAGGAAGA-GCTTCGGAAG 416 consensus_9663#2 GCTGCA-GATGCAGCAGCAGATCGCGAGGGCCCAAGCTAAGAAGGAAGA-GCTTCGGAAG 63 consensus_9663#1 ATTGTTTGGTTTACGTATTTGCCATGATTTTATAGGATGGAAATTTAGGTGTAACAGAAT 284 ** * * * * ** * * * ** ** * * *** consensus_9663#0 CAGCCAGAACAAATTATTCTATCAGAAG----TTCGTCAAATGGTTCAGCAGAT-GCAAG 471 consensus_9663#2 CAGCCAGAACAAATTATTTTATCAGAGG----TTCGTCAAATGGTGCAGCAGAT-GCAAG 118 consensus_9663#1 CAGACATGTTATTTACTTCTATGATATGCTTTTTTTTTTAATGTTTCTGGACCTTACATG 344 *** ** * * ** *** * * * ** * **** * * * * * ** * consensus_9663#0 CC--CTCAATCAGCAGCTTGAAGAAGCTGAAACCGCCATAGATGAATATTTCAAACCAAT 529 consensus_9663#2 CC--CTCAATCAGCAGCTTGAAGAAACTGAAACCGCCATAGATGAGTATTTCAAACCAAT 176 consensus_9663#1 CTAACTTATCCTCCATCCTATTTCACAGGAAACCGCCATAGATGAATATTTCAAACCAAT 404 * ** * * ** * * * ***************** ************** consensus_9663#0 CGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAA 589 consensus_9663#2 CGATAAGAATGCTAAGATCATAACGGACATGCACCCGGAGAAAGAAGAGAAGCAAATAAA 236 consensus_9663#1 CGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAA 464 *********************** ********* * ************************ consensus_9663#0 GGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAG 649 consensus_9663#2 GGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATTGCAAGTAAGAG 296 consensus_9663#1 GGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAG 524 ************************************************ *********** consensus_9663#0 AGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGC 709 consensus_9663#2 AGCTCAGGCCCCTGCCATAGAGTTTAAAGACACCCAAACG------AGTGACAAGATTGC 350 consensus_9663#1 AGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGC 584 ********** * ********** ******* ******** ************** consensus_9663#0 TGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTT 769 consensus_9663#2 TGAAGGCCCTCCGAAAGAAGAAACCATGAAATAAGTACGGTTCATTGTTAGTCTATTTA- 409 consensus_9663#1 TGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTT 644 ************ ************************* * ************* *** consensus_9663#0 TTTTGTAAACAAGTATTATATGCCAGTGGATTCTTTACATAGGCTTTGCTGGGCTAGGCA 829 consensus_9663#2 --TTGTAAACAAGTATTATGTGCAAATGGATTCTTTACATAGGCTTTGGTGGGCTAGGCA 467 consensus_9663#1 T-TTGTAAACAAGTATTATATGCCAGTG-------------------------------- 671 ***************** *** * ** consensus_9663#0 ATAA-TAAGTATGGATG------------------------------------------- 845 consensus_9663#2 ATAAGTATGGATGCATGGGAGGACAGTTGCCATTTTTTGTCACTAACAGGAGGCTATCCT 527 consensus_9663#1 ------------------------------------------------------------ consensus_9663#0 ------------------------------------------------------------ consensus_9663#2 TTTTTTTGGCAGAGCTCTAACTAGTAACTAGTGTGCTTTACTATTCAAGATTGTGAAATC 587 consensus_9663#1 ------------------------------------------------------------ consensus_9663#0 ----------------------------- consensus_9663#2 ATGGAACATTTGTTCAATGTGATTGGGCC 616 consensus_9663#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||