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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1193 fasta sequence
[CCACCTCGTCCACGGCCTTCGTCAGCCTCGACAAGACCAATGCCGACACGCACCAAGAACCGCCGCCGCCGCCCTCGCCGTACTTCTGCACCCCCTGCACCTACCAGAGGCCCAAGCTTGATGCCCCCGGCCGTCCCCGCCGACGCCGACGCAGCGCGTCGCTGGTCCACATCTCCATCGACTGCACCGGCGGGGCCGGGGCCACCTCCGGCCGCCGCTCCGTCCACTCCGACGCGCCCCTCCTGCCGTACTCGTCGTCGTTGCCGACGAAGGATGGCAGGAAACAGAGCAGGGCGAGGAGAAAGGCGCGCTCTTCGCCGTCGACATCCAGGCGGCATTGCCCGTCGTCCTCCTGGGGCCGCGCGCGGCTCCCGAGGGGGGCACCGGGGCAGTACAGCTCCTCGTCGTCCACGGTGACCGACGACGAGCTCGCGCCGTTCAGCACCGACGAGGAGGGCGGCGAGGAGGCCGACACGAGGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACCACACCAACAGCAGCAGCAGCCTCGCCAGGAAGGGCCACAAGAACGCGCCGGCGCGCCGCCCGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGGTGGTATCCGTGGCGGCGACGAAGAAGCAGCACAACGACATGAAGAAGAAGGAGGAGACGGCGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGGCGGTGGTGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGGCGCATCTGCAGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCAACTCGCCGCAGCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTATGGGAGGCCGTCTTCGGCGAGGAGTGAGTGAGCGATCACTGATCAGTGACAGTGGCCAACCAACCGATCGACCAAAGCCTTGTTTGATTAGCCAACCAAGCTATAACTCGTTCGTTGTGAGGCCAGTAGAGCAGAGGTGTACGTAGTTAGGAGATGCAGCGAGCGATCGGCATTAATGCGTGTTATCTTGGTTTGCAGTTAAGTCTACTTTGTATTTACATGAAGAATTGGCATATCGATCGTGCCATCAAATGC]
[+] EMBL AK063574 [CCACCTCGTCCACGGCCTTCGTCAGCCTCGACAAGACCAATGCCGACACGCACCAAGAACCGCCGCCGCCGCCCTCGCCGTACTTCTGCACCCCCTGCACCTACCAGAGGCCCAAGCTTGATGCCCCCGGCCGTCCCCGCCGACGCCGACGCAGCGCGTCGCTGGTCCACATCTCCATCGACTGCACCGGCGGGGCCGGGGCCACCTCCGGCCGCCGCTCCGTCCACTCCGACGCGCCCCTCCTGCCGTACTCGTCGTCGTTGCCGACGAAGGATGGCAGGAAACAGAGCAGGGCGAGGAGAAAGGCGCGCTCTTCGCCGTCGACATCCAGGCGGCATTGCCCGTCGTCCTCCTGGGGCCGCGCGCGGCTCCCGAGGGGGGCACCGGGGCAGTACAGCTCCTCGTCGTCCACGGTGACCGACGACGAGCTCGCGCCGTTCAGCACCGACGAGGAGGGCGGCGAGGAGGCCGACACGAGGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACCACACCAACAGCAGCAGCAGCCTCGCCAGGAAGGGCCACAAGAACGCGCCGGCGCGCCGCCCGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGGTGGTATCCGTGGCGGCGACGAAGAAGCAGCACAACGACATGAAGAAGAAGGAGGAGACGGCGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGGCGGTGGTGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGGCGCATCTGCAGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCAACTCGCCGCAGCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTATGGGAGGCCGTCTTCGGCGAGGAGTGAGTGAGCGATCACTGATCAGTGACAGTGGCCAACCAACCGATCGACCAAAGCCTTGTTTGATTAGCCAACCAAGCTATAACTCGTTCGTTGTGAGGCCAGTAGAGCAGAGGTGTACGTAGTTAGGAGATGCAGCGAGCGATCGGCATTAATGCGTGTTATCTTGGTTTGCAGTTAAGTCTACTTTGTATTTACATGAAGAATTGGCATATCGATCGTGC ]
[+] EMBL CB674232 [CCACCTCGTCCACGGCCTTCGTCAGCCTCGACAAGACCAATGCCGACACGCACCAAGAACCGCCGCCGCCGCCCTCGCCGTACTTCTGCACCCCCTGCACCTACCAGAGGCCCAAGCTTGATGCCCCCGGCCGTCCCCGCCGACGCCGACGCAGCGCGTCGCTGGTCCACATCTCCATCGACTGCACCGGCGGGGCCGGGGCCACCTCCGGCCGCCGCTCCGTCCACTCCGACGCGCCCCTCCTGCCGTACTCGTCGTCGTTGCCGACGAAGGATGGCAGGAAACAGAGCAGGGCGAGGAGAAAGGCGCGCTCTTCGCCGTCGACATCCAGGCGGCATTGCCCGTCGTCCTCCTGGGGCCGCGCGCGGCTCCCGAGGGGGGCACCGGGGCAGTACAGCTCCTCGTCGTCCACGGTGACCGACGACGAGCTCGCGCCGTTCAGCACCGACGAGGAGGGCGGCGAGGAGGCCGACACGAGGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACCACACCAACAGCAGCAGCAGCCTCGCCAGGAAGGGCCACAAGAACGCGCCGGCGCGCCGCCCGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCG ]
[+] EMBL CB683658 [CCACCTCGTCCACGGCCTTCGTCAGCCTCGACAAGACCAATGCCGACACGCACCAAGAACCGCCGCCGCCGCCCTCGCCGTACTTCTGCACCCCCTGCACCTACCAGAGGCCCAAGCTTGATGCCCCCGGCCGTCCCCGCCGACGCCGACGCAGCGCGTCGCTGGTCCACATCTCCATCGACTGCACCGGCGGGGCCGGGGCCACCTCCGGCCGCCGCTCCGTCCACTCCGACGCGCCCCTCCTGCCGTACTCGTCGTCGTTGCCGACGAAGGATGGCAGGAAACAGAGCAGGGCGAGGAGAAAGGCGCGCTCTTCGCCGTCGACATCCAGGCGGCATTGCCCGTCGTCCTCCTGGGGCCGCGCGCGGCTCCCGAGGGGGGCACCGGGGCAGTACAGCTCCTCGTCGTCCACGGTGACCGACGACGAGCTCGCGCCGTTCAGCACCGACGAGGAGGGCGGCGAGGAGGCCGACACGAGGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACCACACCAACAGCAGCAGCAGCCTCGCCAGGTAGGGCCACAAGAACGCGCCGGCGCGCCG CCGCCGGCGCGG ]
[-] EMBL CB674233 [ GAGGAGGGCGGCGAGGAGGCCGACACGAGGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACCACACCAACAGCAGCAGCAGCCTCGCCAGGAAGGGCCACAAGAACGCGCCGGCGCGCCGCCCGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGGTGGTATCCGTGGCGGCGACGAAGAAGCAGCACAACGACATGAAGAAGAAGGAGGAGACGGCGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGGCGGTGGTGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGGCGCATCTGCAGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCAACTCGCCGCAGCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTATGGGAGGCCGTCTTCGGCGAGGAGTGAGTGAGCGATCACTGATCAGTGACAGTGGCCAACCAACCGATCGACCAAAGCCTTGTTTGATTAGCCAACCAAGCTATAACTCGTTCGTTGTGAGGCCAGTAGAGCAGAGGTGTACGTAGTTAGGAGATGCAGCGAGCGATCGGCATTAATGCGTGTTATCTTGGTTTGCAGTTAAGTCTACTTTGTATTTACATGAAGAATTGGCATATCGATCGTGCCATCAAATGC]
[+] EMBL AU183869 [ GCCGCCCGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGGTGGTATCCGTGGCGGCGACGAAGAAGCAGCACAACGACATGAAGAAGAAGGAGGAGACGGCGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGGCGGTGGTGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGGCGCATCTGCAGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCAACTCGCCGCAGCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTATGGGAGGCCGTCTTCGGCGAGGAGTGAGTGAGCGATCACTGATCAGTGACAGTGGCCAACCAACCGATCGACCAAAGCCTTGTTTGATTAGCCAACCAAGCTATAACTCGTTCGTTGTGAGGCCAGTAGAGCAGAGGTGTACGTAGTTAGGAGATGCAGCGAGCGATCGGCA ]
consensusID : consensus_9665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[ACCGTCACCGACGACGAGCTCCCGCCGTTCAGCAGCAGCGACGGGGAGGGCGGCGAGGGGGCGGAGACGAGGTCGTCGACGCTCTTCTCCTCCCTCAGCATCTCCTCCGACTCCACCTCCGATTTCTACAACAGCACCGGCGGCGGGTCAAAGCGCCACCACAAGAACCCACCTCGCCGCGTGCCTCGCCGCGCGCCGCCGAGAGGCGCCAATGCCGGCGACGCGAAGCCGCACGAAGACAACAAGGGCGGCGCGAAGAAAGCCGACGACAAGCACGGCGGCGGCGTCGTCGGCGTGGCCGCGGCGGGCAGCATGGCGGTGGTGAAGCGGTCGCACAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTGGTGGAGCGGCGCATCTGTGGCGCCGACGCCATGGGCGACCTCCTGATGTCGTACCTGTCGCTCAACTCAAGGCGCCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTCTGGGAAGCCGTCTTCGCCACGCCCTGATCGATCGATCGATCGATCGATCTCCATCCTTGTAACAAATGCAATGTACAGCTTGTTCTTCCAAGCATCGATTGTTCTCCGGAACATGTAACTTAATTTATTATTAGTAGCCGCTTAAGAATTT]
[+] EMBL AK108848 [ACCGTCACCGACGACGAGCTCCCGCCGTTCAGCAGCAGCGACGGGGAGGGCGGCGAGGGGGCGGAGACGAGGTCGTCGACGCTCTTCTCCTCCCTCAGCATCTCCTCCGACTCCACCTCCGATTTCTACAACAGCACCGGCGGCGGGTCAAAGCGCCACCACAAGAACCCACCTCGCCGCGTGCCTCGCCGCGCGCCGCCGAGAGGCGCCAATGCCGGCGACGCGAAGCCGCACGAAGACAACAAGGGCGGCGCGAAGAAAGCCGACGACAAGCACGGCGGCGGCGTCGTCGGCGTGGCCGCGGCGGGCAGCATGGCGGTGGTGAAGCGGTCGCACAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTGGTGGAGCGGCGCATCTGTGGCGCCGACGCCATGGGCGACCTCCTGATGTCGTACCTGTCGCTCAACTCAAGGCGCCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTCTGGGAAGCCGTCTTCGCCACGCCCTGATCGATCGATCGATCGATCGATCTCCATCCTTGTAACAAATGCAATGTACAGCTTGTTCTTCCAAGCATCGATTGTTCTCCGGAACATGTAACTTAATTTATTATTAGTAGCCGCTTAAGAATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9665#0 CCACCTCGTCCACGGCCTTCGTCAGCCTCGACAAGACCAATGCCGACACGCACCAAGAAC 60
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 CGCCGCCGCCGCCCTCGCCGTACTTCTGCACCCCCTGCACCTACCAGAGGCCCAAGCTTG 120
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 ATGCCCCCGGCCGTCCCCGCCGACGCCGACGCAGCGCGTCGCTGGTCCACATCTCCATCG 180
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 ACTGCACCGGCGGGGCCGGGGCCACCTCCGGCCGCCGCTCCGTCCACTCCGACGCGCCCC 240
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 TCCTGCCGTACTCGTCGTCGTTGCCGACGAAGGATGGCAGGAAACAGAGCAGGGCGAGGA 300
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 GAAAGGCGCGCTCTTCGCCGTCGACATCCAGGCGGCATTGCCCGTCGTCCTCCTGGGGCC 360
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 GCGCGCGGCTCCCGAGGGGGGCACCGGGGCAGTACAGCTCCTCGTCGTCCACGGTGACCG 420
consensus_9665#1 --------------------------------------------------ACCGTCACCG 10
** ** ****
consensus_9665#0 ACGACGAGCTCGCGCCGTTCAGCACC---GACGAGGAGGGCGGCGAGGAGGCCGACACGA 477
consensus_9665#1 ACGACGAGCTCCCGCCGTTCAGCAGCAGCGACGGGGAGGGCGGCGAGGGGGCGGAGACGA 70
*********** ************ * **** ************** *** ** ****
consensus_9665#0 GG------ACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACC 531
consensus_9665#1 GGTCGTCGACGCTCTTCTCCTCCCTCAGCATCTCCTCCGACTCCACCTCCGATTTCTACA 130
** *********** ********* ******************* ** ******
consensus_9665#0 ACACCAACAGCAGCAGCAGCCTCGCCAGGAAGGGCCACAAGAACGCGCCGGCGCGCCGCC 591
consensus_9665#1 ACAGCACCGGCGGCGG-------GTCA--AAGCGCCACCACAAGAACCCACCTCGCCGCG 181
*** ** * ** ** * * ** *** ***** * ** ** * ******
consensus_9665#0 CGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGG 651
consensus_9665#1 TGCCT---CGCCGCGCGCCGCCGAGAGGCGCCAATG------CCGGCGACGCGAAGCCG- 231
*** ** ****** ** **** * *** * *** ** * ****
consensus_9665#0 TGGTATCCGTGGCGGCGACGAAGAAGCAGCACAACGACATGAAGAAGAAGGAGGAGACGG 711
consensus_9665#1 -------CACGAAGACAACAAGGG----------CGGCGCGAAGAA-----AGCCGACGA 269
* * * * ** * * ** * ****** ** ****
consensus_9665#0 CGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGGCGGTGG 771
consensus_9665#1 CAAGCACG--GCGGC--GGCGTCGTCGGCGTGGCCGCGGCGGGC---AGCATGGCGGTGG 322
* * ** * ** ** *** * ** ** **** ** *** ************
consensus_9665#0 TGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGG 831
consensus_9665#1 TGAAGCGGTCGCACAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTGGTGG 382
*********** ****************************************** ****
consensus_9665#0 AGCGGCGCATCTGCAGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCA 891
consensus_9665#1 AGCGGCGCATCTGTGGCGCCGACGCCATGGGCGACCTCCTGATGTCGTACCTGTCGCTCA 442
************* *** * **** ** ****** ********* *******
consensus_9665#0 ACTCGCCGCAGCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTATGGGAGGCCGTCT 951
consensus_9665#1 ACTCAAGGCGCCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTCTGGGAAGCCGTCT 502
**** ** *********************************** ***** *******
consensus_9665#0 TCGGCGAGGAGTGAGTGAGCGATCACTGATCAGTGACAGTGGCCAACCAACCGATCGACC 1011
consensus_9665#1 TCGCCACGCCCTGATCGATCGATC---GATCGAT-----CGATCT-CCATCCTTGTAACA 553
*** * * *** ** ***** **** * * * *** ** **
consensus_9665#0 AAAGCCTTGTTTGATTAGCCAACCAAGCTATAACTCGTTCGTTGTGAGGCCAGTAGAGCA 1071
consensus_9665#1 AATGCAATGTACAGCTTGTTCTTCCAAGCATCGATTGTTC--TCCGGAACATGTAACTTA 611
** ** *** * * * * ** * **** * * * *** *
consensus_9665#0 GAGGTGTACGTAGTTAGGAGATGCAGCGAGCGATCGGCATTAATGCGTGTTATCTTGGTT 1131
consensus_9665#1 A-----TTTATTATTAGTAGCCGCT-TAAGAATTT------------------------- 640
* * **** ** ** ** *
consensus_9665#0 TGCAGTTAAGTCTACTTTGTATTTACATGAAGAATTGGCATATCGATCGTGCCATCAAAT 1191
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 GC 1193
consensus_9665#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||