These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1193 fasta sequence [CCACCTCGTCCACGGCCTTCGTCAGCCTCGACAAGACCAATGCCGACACGCACCAAGAACCGCCGCCGCCGCCCTCGCCGTACTTCTGCACCCCCTGCACCTACCAGAGGCCCAAGCTTGATGCCCCCGGCCGTCCCCGCCGACGCCGACGCAGCGCGTCGCTGGTCCACATCTCCATCGACTGCACCGGCGGGGCCGGGGCCACCTCCGGCCGCCGCTCCGTCCACTCCGACGCGCCCCTCCTGCCGTACTCGTCGTCGTTGCCGACGAAGGATGGCAGGAAACAGAGCAGGGCGAGGAGAAAGGCGCGCTCTTCGCCGTCGACATCCAGGCGGCATTGCCCGTCGTCCTCCTGGGGCCGCGCGCGGCTCCCGAGGGGGGCACCGGGGCAGTACAGCTCCTCGTCGTCCACGGTGACCGACGACGAGCTCGCGCCGTTCAGCACCGACGAGGAGGGCGGCGAGGAGGCCGACACGAGGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACCACACCAACAGCAGCAGCAGCCTCGCCAGGAAGGGCCACAAGAACGCGCCGGCGCGCCGCCCGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGGTGGTATCCGTGGCGGCGACGAAGAAGCAGCACAACGACATGAAGAAGAAGGAGGAGACGGCGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGGCGGTGGTGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGGCGCATCTGCAGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCAACTCGCCGCAGCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTATGGGAGGCCGTCTTCGGCGAGGAGTGAGTGAGCGATCACTGATCAGTGACAGTGGCCAACCAACCGATCGACCAAAGCCTTGTTTGATTAGCCAACCAAGCTATAACTCGTTCGTTGTGAGGCCAGTAGAGCAGAGGTGTACGTAGTTAGGAGATGCAGCGAGCGATCGGCATTAATGCGTGTTATCTTGGTTTGCAGTTAAGTCTACTTTGTATTTACATGAAGAATTGGCATATCGATCGTGCCATCAAATGC] [+] EMBL AK063574 [CCACCTCGTCCACGGCCTTCGTCAGCCTCGACAAGACCAATGCCGACACGCACCAAGAACCGCCGCCGCCGCCCTCGCCGTACTTCTGCACCCCCTGCACCTACCAGAGGCCCAAGCTTGATGCCCCCGGCCGTCCCCGCCGACGCCGACGCAGCGCGTCGCTGGTCCACATCTCCATCGACTGCACCGGCGGGGCCGGGGCCACCTCCGGCCGCCGCTCCGTCCACTCCGACGCGCCCCTCCTGCCGTACTCGTCGTCGTTGCCGACGAAGGATGGCAGGAAACAGAGCAGGGCGAGGAGAAAGGCGCGCTCTTCGCCGTCGACATCCAGGCGGCATTGCCCGTCGTCCTCCTGGGGCCGCGCGCGGCTCCCGAGGGGGGCACCGGGGCAGTACAGCTCCTCGTCGTCCACGGTGACCGACGACGAGCTCGCGCCGTTCAGCACCGACGAGGAGGGCGGCGAGGAGGCCGACACGAGGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACCACACCAACAGCAGCAGCAGCCTCGCCAGGAAGGGCCACAAGAACGCGCCGGCGCGCCGCCCGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGGTGGTATCCGTGGCGGCGACGAAGAAGCAGCACAACGACATGAAGAAGAAGGAGGAGACGGCGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGGCGGTGGTGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGGCGCATCTGCAGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCAACTCGCCGCAGCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTATGGGAGGCCGTCTTCGGCGAGGAGTGAGTGAGCGATCACTGATCAGTGACAGTGGCCAACCAACCGATCGACCAAAGCCTTGTTTGATTAGCCAACCAAGCTATAACTCGTTCGTTGTGAGGCCAGTAGAGCAGAGGTGTACGTAGTTAGGAGATGCAGCGAGCGATCGGCATTAATGCGTGTTATCTTGGTTTGCAGTTAAGTCTACTTTGTATTTACATGAAGAATTGGCATATCGATCGTGC ] [+] EMBL CB674232 [CCACCTCGTCCACGGCCTTCGTCAGCCTCGACAAGACCAATGCCGACACGCACCAAGAACCGCCGCCGCCGCCCTCGCCGTACTTCTGCACCCCCTGCACCTACCAGAGGCCCAAGCTTGATGCCCCCGGCCGTCCCCGCCGACGCCGACGCAGCGCGTCGCTGGTCCACATCTCCATCGACTGCACCGGCGGGGCCGGGGCCACCTCCGGCCGCCGCTCCGTCCACTCCGACGCGCCCCTCCTGCCGTACTCGTCGTCGTTGCCGACGAAGGATGGCAGGAAACAGAGCAGGGCGAGGAGAAAGGCGCGCTCTTCGCCGTCGACATCCAGGCGGCATTGCCCGTCGTCCTCCTGGGGCCGCGCGCGGCTCCCGAGGGGGGCACCGGGGCAGTACAGCTCCTCGTCGTCCACGGTGACCGACGACGAGCTCGCGCCGTTCAGCACCGACGAGGAGGGCGGCGAGGAGGCCGACACGAGGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACCACACCAACAGCAGCAGCAGCCTCGCCAGGAAGGGCCACAAGAACGCGCCGGCGCGCCGCCCGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCG ] [+] EMBL CB683658 [CCACCTCGTCCACGGCCTTCGTCAGCCTCGACAAGACCAATGCCGACACGCACCAAGAACCGCCGCCGCCGCCCTCGCCGTACTTCTGCACCCCCTGCACCTACCAGAGGCCCAAGCTTGATGCCCCCGGCCGTCCCCGCCGACGCCGACGCAGCGCGTCGCTGGTCCACATCTCCATCGACTGCACCGGCGGGGCCGGGGCCACCTCCGGCCGCCGCTCCGTCCACTCCGACGCGCCCCTCCTGCCGTACTCGTCGTCGTTGCCGACGAAGGATGGCAGGAAACAGAGCAGGGCGAGGAGAAAGGCGCGCTCTTCGCCGTCGACATCCAGGCGGCATTGCCCGTCGTCCTCCTGGGGCCGCGCGCGGCTCCCGAGGGGGGCACCGGGGCAGTACAGCTCCTCGTCGTCCACGGTGACCGACGACGAGCTCGCGCCGTTCAGCACCGACGAGGAGGGCGGCGAGGAGGCCGACACGAGGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACCACACCAACAGCAGCAGCAGCCTCGCCAGGTAGGGCCACAAGAACGCGCCGGCGCGCCG CCGCCGGCGCGG ] [-] EMBL CB674233 [ GAGGAGGGCGGCGAGGAGGCCGACACGAGGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACCACACCAACAGCAGCAGCAGCCTCGCCAGGAAGGGCCACAAGAACGCGCCGGCGCGCCGCCCGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGGTGGTATCCGTGGCGGCGACGAAGAAGCAGCACAACGACATGAAGAAGAAGGAGGAGACGGCGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGGCGGTGGTGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGGCGCATCTGCAGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCAACTCGCCGCAGCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTATGGGAGGCCGTCTTCGGCGAGGAGTGAGTGAGCGATCACTGATCAGTGACAGTGGCCAACCAACCGATCGACCAAAGCCTTGTTTGATTAGCCAACCAAGCTATAACTCGTTCGTTGTGAGGCCAGTAGAGCAGAGGTGTACGTAGTTAGGAGATGCAGCGAGCGATCGGCATTAATGCGTGTTATCTTGGTTTGCAGTTAAGTCTACTTTGTATTTACATGAAGAATTGGCATATCGATCGTGCCATCAAATGC] [+] EMBL AU183869 [ GCCGCCCGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGGTGGTATCCGTGGCGGCGACGAAGAAGCAGCACAACGACATGAAGAAGAAGGAGGAGACGGCGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGGCGGTGGTGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGGCGCATCTGCAGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCAACTCGCCGCAGCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTATGGGAGGCCGTCTTCGGCGAGGAGTGAGTGAGCGATCACTGATCAGTGACAGTGGCCAACCAACCGATCGACCAAAGCCTTGTTTGATTAGCCAACCAAGCTATAACTCGTTCGTTGTGAGGCCAGTAGAGCAGAGGTGTACGTAGTTAGGAGATGCAGCGAGCGATCGGCA ] consensusID : consensus_9665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [ACCGTCACCGACGACGAGCTCCCGCCGTTCAGCAGCAGCGACGGGGAGGGCGGCGAGGGGGCGGAGACGAGGTCGTCGACGCTCTTCTCCTCCCTCAGCATCTCCTCCGACTCCACCTCCGATTTCTACAACAGCACCGGCGGCGGGTCAAAGCGCCACCACAAGAACCCACCTCGCCGCGTGCCTCGCCGCGCGCCGCCGAGAGGCGCCAATGCCGGCGACGCGAAGCCGCACGAAGACAACAAGGGCGGCGCGAAGAAAGCCGACGACAAGCACGGCGGCGGCGTCGTCGGCGTGGCCGCGGCGGGCAGCATGGCGGTGGTGAAGCGGTCGCACAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTGGTGGAGCGGCGCATCTGTGGCGCCGACGCCATGGGCGACCTCCTGATGTCGTACCTGTCGCTCAACTCAAGGCGCCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTCTGGGAAGCCGTCTTCGCCACGCCCTGATCGATCGATCGATCGATCGATCTCCATCCTTGTAACAAATGCAATGTACAGCTTGTTCTTCCAAGCATCGATTGTTCTCCGGAACATGTAACTTAATTTATTATTAGTAGCCGCTTAAGAATTT] [+] EMBL AK108848 [ACCGTCACCGACGACGAGCTCCCGCCGTTCAGCAGCAGCGACGGGGAGGGCGGCGAGGGGGCGGAGACGAGGTCGTCGACGCTCTTCTCCTCCCTCAGCATCTCCTCCGACTCCACCTCCGATTTCTACAACAGCACCGGCGGCGGGTCAAAGCGCCACCACAAGAACCCACCTCGCCGCGTGCCTCGCCGCGCGCCGCCGAGAGGCGCCAATGCCGGCGACGCGAAGCCGCACGAAGACAACAAGGGCGGCGCGAAGAAAGCCGACGACAAGCACGGCGGCGGCGTCGTCGGCGTGGCCGCGGCGGGCAGCATGGCGGTGGTGAAGCGGTCGCACAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTGGTGGAGCGGCGCATCTGTGGCGCCGACGCCATGGGCGACCTCCTGATGTCGTACCTGTCGCTCAACTCAAGGCGCCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTCTGGGAAGCCGTCTTCGCCACGCCCTGATCGATCGATCGATCGATCGATCTCCATCCTTGTAACAAATGCAATGTACAGCTTGTTCTTCCAAGCATCGATTGTTCTCCGGAACATGTAACTTAATTTATTATTAGTAGCCGCTTAAGAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9665#0 CCACCTCGTCCACGGCCTTCGTCAGCCTCGACAAGACCAATGCCGACACGCACCAAGAAC 60 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 CGCCGCCGCCGCCCTCGCCGTACTTCTGCACCCCCTGCACCTACCAGAGGCCCAAGCTTG 120 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 ATGCCCCCGGCCGTCCCCGCCGACGCCGACGCAGCGCGTCGCTGGTCCACATCTCCATCG 180 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 ACTGCACCGGCGGGGCCGGGGCCACCTCCGGCCGCCGCTCCGTCCACTCCGACGCGCCCC 240 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 TCCTGCCGTACTCGTCGTCGTTGCCGACGAAGGATGGCAGGAAACAGAGCAGGGCGAGGA 300 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 GAAAGGCGCGCTCTTCGCCGTCGACATCCAGGCGGCATTGCCCGTCGTCCTCCTGGGGCC 360 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 GCGCGCGGCTCCCGAGGGGGGCACCGGGGCAGTACAGCTCCTCGTCGTCCACGGTGACCG 420 consensus_9665#1 --------------------------------------------------ACCGTCACCG 10 ** ** **** consensus_9665#0 ACGACGAGCTCGCGCCGTTCAGCACC---GACGAGGAGGGCGGCGAGGAGGCCGACACGA 477 consensus_9665#1 ACGACGAGCTCCCGCCGTTCAGCAGCAGCGACGGGGAGGGCGGCGAGGGGGCGGAGACGA 70 *********** ************ * **** ************** *** ** **** consensus_9665#0 GG------ACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCCACCTCGGAGTTCTACC 531 consensus_9665#1 GGTCGTCGACGCTCTTCTCCTCCCTCAGCATCTCCTCCGACTCCACCTCCGATTTCTACA 130 ** *********** ********* ******************* ** ****** consensus_9665#0 ACACCAACAGCAGCAGCAGCCTCGCCAGGAAGGGCCACAAGAACGCGCCGGCGCGCCGCC 591 consensus_9665#1 ACAGCACCGGCGGCGG-------GTCA--AAGCGCCACCACAAGAACCCACCTCGCCGCG 181 *** ** * ** ** * * ** *** ***** * ** ** * ****** consensus_9665#0 CGCCGGCGCGGCGCGCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGG 651 consensus_9665#1 TGCCT---CGCCGCGCGCCGCCGAGAGGCGCCAATG------CCGGCGACGCGAAGCCG- 231 *** ** ****** ** **** * *** * *** ** * **** consensus_9665#0 TGGTATCCGTGGCGGCGACGAAGAAGCAGCACAACGACATGAAGAAGAAGGAGGAGACGG 711 consensus_9665#1 -------CACGAAGACAACAAGGG----------CGGCGCGAAGAA-----AGCCGACGA 269 * * * * ** * * ** * ****** ** **** consensus_9665#0 CGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGGCGGTGG 771 consensus_9665#1 CAAGCACG--GCGGC--GGCGTCGTCGGCGTGGCCGCGGCGGGC---AGCATGGCGGTGG 322 * * ** * ** ** *** * ** ** **** ** *** ************ consensus_9665#0 TGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGG 831 consensus_9665#1 TGAAGCGGTCGCACAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTGGTGG 382 *********** ****************************************** **** consensus_9665#0 AGCGGCGCATCTGCAGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCA 891 consensus_9665#1 AGCGGCGCATCTGTGGCGCCGACGCCATGGGCGACCTCCTGATGTCGTACCTGTCGCTCA 442 ************* *** * **** ** ****** ********* ******* consensus_9665#0 ACTCGCCGCAGCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTATGGGAGGCCGTCT 951 consensus_9665#1 ACTCAAGGCGCCACCACCCGGCCATCCTCGCCGCCTTCGAGGACGTCTGGGAAGCCGTCT 502 **** ** *********************************** ***** ******* consensus_9665#0 TCGGCGAGGAGTGAGTGAGCGATCACTGATCAGTGACAGTGGCCAACCAACCGATCGACC 1011 consensus_9665#1 TCGCCACGCCCTGATCGATCGATC---GATCGAT-----CGATCT-CCATCCTTGTAACA 553 *** * * *** ** ***** **** * * * *** ** ** consensus_9665#0 AAAGCCTTGTTTGATTAGCCAACCAAGCTATAACTCGTTCGTTGTGAGGCCAGTAGAGCA 1071 consensus_9665#1 AATGCAATGTACAGCTTGTTCTTCCAAGCATCGATTGTTC--TCCGGAACATGTAACTTA 611 ** ** *** * * * * ** * **** * * * *** * consensus_9665#0 GAGGTGTACGTAGTTAGGAGATGCAGCGAGCGATCGGCATTAATGCGTGTTATCTTGGTT 1131 consensus_9665#1 A-----TTTATTATTAGTAGCCGCT-TAAGAATTT------------------------- 640 * * **** ** ** ** * consensus_9665#0 TGCAGTTAAGTCTACTTTGTATTTACATGAAGAATTGGCATATCGATCGTGCCATCAAAT 1191 consensus_9665#1 ------------------------------------------------------------ consensus_9665#0 GC 1193 consensus_9665#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||