These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1210 fasta sequence [AAATAGCTCACCAGTTCTGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGCCGCCGGCGAGAGGCCGGCGA-CCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCGGCGCCGCTGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGTTCTCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGATGATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCGTTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCAAACTAGACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGTCGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCAAGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGCTGGCCTCGGCGCCGACGGGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAGCCCCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGTGTTCAAGCCGCGCCTGAGCAGCCATGGCAGGGTCGTCGACGTCGCCCCCAACTTCGGCAACTTCGTGGCGTCGGTGGTGACGCTGTTCTCCCGGAGGAAGAAGCTGTCGCTGGTGAGCCTGAAGATGAGCAAGGAGGACCTGGGGTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAGGACGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCTCAGCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGCTCTAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATA-TTTGATCATGCCATCGGTACACAACAATCAATCCGTACCCCTCATCTGCGCTGGTTAAAAAAATACTATATATGATTACTATTATATTAA] [+] EMBL AK069384 [AAATAGCTCACCAGTTCTGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGCCGCCGGCGAGAGGCCGGCGA CCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCGGCGCCGCTGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGTTCTCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGATGATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCGTTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCAAACTAGACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGTCGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCAAGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGCTGGCCTCGGCGCCGACGGGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAGCCCCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGTGTTCAAGCCGCGCCTGAGCAGCCATGGCAGGGTCGTCGACGTCGCCCCCAACTTCGGCAACTTCGTGGCGTCGGTGGTGACGCTGTTCTCCCGGAGGAAGAAGCTGTCGCTGGTGAGCCTGAAGATGAGCAAGGAGGACCTGGGGTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAGGACGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCTCAGCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGCTCTAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATA TTTGATCATGCCATCGGTA ] [+] EMBL C73093 [ GTTCTGACAACGGCGTGA NAGACATCACCTGATCTCACCAAGAANATGGCCGCCGGCGAGAGGCCGG GANCCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCGGCG CGTNGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAA TTCTCGTAAAAGTAGAAGCTGCAA CATCAATCAATCCGATTTGATGACTCAGAAAGGGATGATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCGTTGAGGTTGGCTCTGCAGTACGCGAGTTC AANTTGGTGAT AAGTTGTCTCC AACTAG NTTCTGGACA CAGGGGG CTTGCTGA TACGTGG ] [+] EMBL CA754889 [ TGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGCCGCCGGCGAGAGGCCGGCGA CCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGCGGCGCCGCTGCCCTTAAGTTTGTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGTTCTCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGATGATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGATCGTTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCNAACTAGACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGTCGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCCAGCTCGGCAACCACCGCGTC ] [+] EMBL AU184402 [ AGTACGTGGCCACATCGGACAAGCTCACCGTCGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGACAGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGGCGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGCCAAGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGCTGGCCTCGGCGCCGACGAGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAGCCCCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGTGTTCAAGCCGCGCCTGAGCAGCCATG ] [+] EMBL CA767241 [ GTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAGGACGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCTCAGCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGCTCTAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATATTTTGATCATGCCATCGGTACACAACAATCAATCCGTACCCCTCATCTGCGCTGGTTAAAAAAATACTATATATGATTACTATTATATTAA] consensusID : consensus_9666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [GGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGTCCGTCGGCGAGAGGCCGGTGACCATGCGCGCCGTTCAGTACAGTGGTTACGGTGGTGGTGTTGTTGTTTTTAAGTTTTGTGGTATATTTTGTTTCTTTTGTGTTGTTGGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA758612 [GGCGTGAGCAGACATCACCTGATCTCACCAAGAACATGGTCCGTCGGCGAGAGGCCGGTGACCATGCGCGCCGTTCAGTACAGTGGTTACGGTGGTGGTGTTGTTGTTTTTAAGTTTTGTGGTATATTTTGTTTCTTTTGTGTTGTTGGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9666#0 AAATAGCTCACCAGTTCTGACAACGGCGTGAGCAGACATCACCTGATCTCACCAAGAACA 60 consensus_9666#1 ------------------------GGCGTGAGCAGACATCACCTGATCTCACCAAGAACA 36 ************************************ consensus_9666#0 TGG-CCGCCGGCGAGAGGCCGGCGACCATGCGCGCCGTCCAGTACAGTGGCTACGGCGGC 119 consensus_9666#1 TGGTCCGTCGGCGAGAGGCCGGTGACCATGCGCGCCGTTCAGTACAGTGGTTACGGTGGT 96 *** *** ************** *************** *********** ***** ** consensus_9666#0 GGCGCCGCTGCCCTTAAGTTT-GTGGAAATCCCTGTTCCTTCTGTGAAGAAGGACGAAGT 178 consensus_9666#1 GGTGTTGTTGTTTTTAAGTTTTGTGGTATATTTTGTTTCTTTTGTGTTGTTGGTCGNNNN 156 ** * * ** ******** **** * **** *** **** * ** ** consensus_9666#0 TCTCGTAAAAGTAGAAGCTGCAAGCATCAATCAATCCGATTTGATGACTCAGAAAGGGAT 238 consensus_9666#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 216 consensus_9666#0 GATGCGCCCCTTTCACCCGAAATTTCCATTTATTCCAGTAAATAATGTGTCCGGAGAGAT 298 consensus_9666#1 NNNNNNNNNNNNNNNNNNNN---------------------------------------- 236 consensus_9666#0 CGTTGAGGTTGGCTCTGCAGTACGCGAGTTCAAAGTTGGTGATAAAGTTGTCTCCAAACT 358 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 AGACTTCTGGACAGCAGGGGGCCTTGCTGAGTACGTGGCCACATCGGACAAGCTCACCGT 418 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 CGCTCGCCCTGCCGGAATCTCCGCCGCTGACGCGGCGGGTGTGCCCGTCGCCGGCCTGAC 478 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 AGCGCTCCAGGCGCTCAAGGCCATCGGCACCAAGTTCGACGGCTCGGGCACCAGCGGCGG 538 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 CGCCGACGTTCTGATCACCGCGGCCTCCAGCGGCGTGGGCACGTACGCCGTCCAGCTCGC 598 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 CAAGCTCGGCAACCACCGCGTCACCGCCACATGCGGCGCGCGCAACCTCGGCCTCGTCGC 658 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 TGGCCTCGGCGCCGACGGGGTCCTCGACTACAAGACCCCGGAGGGGGCCGCGCTGTCGAG 718 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 CCCCTCCGGCAAGAAGTACGACTACATCGTCAACATCAGTAACAAGAACAAGTGGTCGGT 778 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 GTTCAAGCCGCGCCTGAGCAGCCATGGCAGGGTCGTCGACGTCGCCCCCAACTTCGGCAA 838 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 CTTCGTGGCGTCGGTGGTGACGCTGTTCTCCCGGAGGAAGAAGCTGTCGCTGGTGAGCCT 898 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 GAAGATGAGCAAGGAGGACCTGGGGTTGCTGCTCGAGCTGATGCGGGAAGGGAAGCTCAG 958 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 GACGGTGGTCGACTCGCGGCATCCGTTCGAGAAGGCGGCGGACGCATGGGCGAGGAGCCT 1018 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 CAGCGGCCATGCCACTGGAAAGGTCATCGTGGAGATGTGAGATTAAGATTCAGCGATGGC 1078 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 TCTAAGCTTTGCTGTCATTTAAATGTATGTGCTATTACCATATTTGATCATGCCATCGGT 1138 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 ACACAACAATCAATCCGTACCCCTCATCTGCGCTGGTTAAAAAAATACTATATATGATTA 1198 consensus_9666#1 ------------------------------------------------------------ consensus_9666#0 CTATTATATTAA 1210 consensus_9666#1 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||