These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9668#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 904 fasta sequence [ATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCGCCATGGCGGATGTGGTGCTGTGGAGGAGGAAGGAGGTGGCCGGCTGGTCGCTGGCGGCGGTGGCGGCGTCGTGGGTCCTCTTCTATTGCTTGCCTGGCTACACGCTGCTCTCCTTCGTGTCCAGCGTGCTCATGATCGTGCTCGTCGTCCTCTTCGTCTGGGCCAAGGCCGCGCGGCTGCTCAACAGGCCACCTCCACCTGTTCCACTGATCAAAATATCTGAAGACTCAATGAGCAAAGCAGCAGCTGCAGTGGGTAACATCCT-ACATAAGGCACTACAGGGTTTTGAAAACATTGCACACGGAAAGGACTCCAGTCTCTTTTACAAGATGGTTTCAGTATTACTGCTGATCTCCATAGTTGGCCGTGTGACTGATCTCATTACTTTGGTATATGCATGCCTTGTTCTTGCTCTCACCATCCCTGCATTGGTGGATAAATATGAAGAAAACATTGCCAAGTTCTTAAATCAAGCGTCAGCAAATATTCAGGCATGTGGACAAGCATGGAAAGCATATAAATCTAAGATTAAGAACTGATCTTGGAAAACAATAAACTGTTTTGATCTCATTGTACAGTTGTCAACAAAATTTTGCCTTGTATACTTGTCTTCCTAGAGTTAAACATGTTGACATCCGTCTTACTGCTCTGTCTGACTGTCTATATACTTCAGTCTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTTCATGCCGT] [+] EMBL AK101770 [ATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCGCCATGGCGGATGTGGTGCTGTGGAGGAGGAAGGAGGTGGCCGGCTGGTCGCTGGCGGCGGTGGCGGCGTCGTGGGTCCTCTTCTATTGCTTGCCTGGCTACACGCTGCTCTCCTTCGTGTCCAGCGTGCTCATGATCGTGCTCGTCGTCCTCTTCGTCTGGGCCAAGGCCGCGCGGCTGCTCAACAGGCCACCTCCACCTGTTCCACTGATCAAAATATCTGAAGACTCAATGAGCAAAGCAGCAGCTGCAGTGGGTAACATCCT ACATAAGGCACTACAGGGTTTTGAAAACATTGCACACGGAAAGGACTCCAGTCTCTTTTACAAGATGGTTTCAGTATTACTGCTGATCTCCATAGTTGGCCGTGTGACTGATCTCATTACTTTGGTATATGCATGCCTTGTTCTTGCTCTCACCATCCCTGCATTGGTGGATAAATATGAAGAAAACATTGCCAAGTTCTTAAATCAAGCGTCAGCAAATATTCAGGCATGTGGACAAGCATGGAAAGCATATAAATCTAAGATTAAGAACTGATCTTGGAAAACAATAAACTGTTTTGATCTCATTGTACAGTTGTCAACAAAATTTTGCCTTGTATACTTGTCTTCCTAGAGTTAAACATGTTGA ] [-] EMBL CF313687 [ ttTGAAGACTCAATGAGCAAAGCAGCAGCTGCAGTGGGTAACATCCTCACATAAGGCACTACAGGGTTTTGAAAACATTGCACACGGAAAGGACTCCAGTCTCTTTTACAAGATGGTTTCAGTATTACTGCTGATCTCCATAGTTGGCCGTGTGACTGATCTCATTACTTTGGTATATGCATGCCTTGTTCTTGCTCTCACCATCCCTGCATTGGTGGATAAATATGAAGAAAACATTGCCAAGTTTTTAAATCAAGCGTCAGCAAATATTCAGGCATGTGGACAAGCATGGAAAGCATATAAATTTAAGATTAAGAACTGATCTTGGAAAACAATAAACTGTTTTGATCTCATTGTACAGTTGTCAACAAAATTTTGCCTTGTATACTTGTCTTCCTAGAGTTAAACATGTTGACATCCGTCTTACTGCTCTGTCTGACTGTCTATATACTTCAGTCTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTTCATGCCGT] [+] EMBL AU222523 [ CCATAGTTGGCCGTGTGACTGATCTCATTACTTTGGTATATGCATGCCTTGTTCTTGCTCTCACCATCCCTGCATTGGTGGATAAATATGAAGAAAACATTGCCAAGTTNTTAAATCAAGCGTCAGCAAATATTCAGGCATGTGGACAAGCATGGAAAGCATATAAATCTAAGATTAAGAACTGATCTTGGAAAACAATAAACTGTTTTGATCTCATTGTACAGTTGTCAACAAAATTTTGCCTTGTATACTTGTCTTCCTAGAGTTAAACATGTTGACATCCGTCTTACTGCTCTGTCTGACTGTCTATATACTTCAGTCTTAGCCCTGCAAAAAAAAA ] consensusID : consensus_9668#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 522 fasta sequence [CGTCACCCAGCAATTTCCAAACTAAAGCTCGCGGAGTTGGAGTATGCGGGGGATTCAGCAGATACCACTTCTGCATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCGCCAGTGAGCTAAGCTCAGTTATCTTCTTCAGTTCGCCCGCCGTAGATCGCCTCCCCTGCGGGCTGTGGTTGCGCGGCTTCGTTTGCAATTTGC-GTTTTGTGATGTGGTGGG-TTTTGTGGGCGCCGAAGTGGGGAATGTGGTGCTGTGGAGGAGGAAGGAGGTGGCCGGCTGGTCGCTGGCGGCGGTGGCGGCGTCCTGGGTCCTCTTCTATTGCTTGCCTGGCTACACGCTGCTCTCCTTCGTGTCCAGCGTGCTCATGATCGTGCTCGT] [+] EMBL CF313686 [CGTCACCCAGCAATTTCCAAACTAAAGCTCGCGGAGTTGGAGTATGCGGGGGATTCAGCAGATACCACTTCTGCATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCGCCAGTGAGCTAAGCTCAGTTATCTTCTTCAGTTCGCCCGCCGTAGATCGCCTCCCCTGCGGGCTGTGGTTGCGCGGCTTCGTTTGCATTTTGC GTTTTGTGATGTGGTGGG TTTTGTGGGCGCCGCAGTGGCGGATGTGGTGCTGTGGAGGAGGAAGGAGGTGGCCGGCTGGTCGCTGGCGGCGGTGGCGGCGTCCTGGGTCCTCTTCTATTGCTTGCCTGGCTACACGCTGCTCTCCTTCGTGTCCAGCGTGCTCATGATCGTGCTCGT] [+] EMBL C28306 [ GAGTATGCGGGGGATTCAGCAGATACCACTTCTGCATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCG CAGTNAGCTAAGCTCAGTTATCTTCTTCAGTTCGCCCGCCGTAGATCGCCTCCCCTGCGGGCTGTGGTTGCGCGGCTTCGTTTGCAATTTGCGGTTTTGTGATGTGGTGGGNTTTTTTGGGCGCCGANTTGCGGAA ] [+] EMBL C28284 [ AGTATGCGGGGGATTCAGCAGATACCACTTCTGCATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAGCTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAATGGATGCCTCTNACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCCTCGGCGGCGGCGCCAGTAAGCTAAGCTCAGTTATCTTCTTCAGTTCGCCCGCCGTAGATCGCCTCCCCTGCGGGCTGTGGTTGCGCGGCTTCGTTTGCANTTTGC GTTTTGTGATGTGGTGGG TTTTNTGGGCGCCGAAATGGGGAATGTGGTNCTTTGGAGGAGGAAGGAGGTTGCCGntg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9668#0 ------------------------------------------------------------ consensus_9668#1 CGTCACCCAGCAATTTCCAAACTAAAGCTCGCGGAGTTGGAGTATGCGGGGGATTCAGCA 60 consensus_9668#0 --------------ATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAG 46 consensus_9668#1 GATACCACTTCTGCATCACGCCGCTGTTCTTGCCGTGCGCTTTTCTCCCCTTTCCACCAG 120 ********************************************** consensus_9668#0 CTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAA 106 consensus_9668#1 CTGAACTCCCGATCGGTCTCCCCCGATCAGAGAGATCCATTCATCCACCCAGCAAGGCAA 180 ************************************************************ consensus_9668#0 TGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCC 166 consensus_9668#1 TGGATGCCTCTGACCAAGGTTGCCGGCTGCTCGGCGCCCAGAGATCGCTGCACGGCCTCC 240 ************************************************************ consensus_9668#0 TCGGCGGCGGCGCCATGGCGGATGTGGTGCTGTGGAGGAGGAAGGAGGTGGCCGGCTGGT 226 consensus_9668#1 TCGGCGGCGGCGCCA----GTGAGCTAAGCTCAGTTATCTTCTTCAGTTCGCCCGCCG-T 295 *************** * * *** * ** * *** ** * * consensus_9668#0 CGCTGGCGGCGGTGGCGGCGTCGTGGGTCCTCTTCTATTGCTTGCCTGGCTACACGCTGC 286 consensus_9668#1 AGATCGCCTCCCCTGCGG-GCTGTGGTTGCGCGGCT-TCGTTTGCA-ATTTGCGTTTTGT 352 * * ** * **** * **** * * * ** * * **** * * ** consensus_9668#0 TCTCCTTCGTGTCCAGCGTGC-TCATGATCGTGCTCGTCGTCCTCTTCGTCTGGGCCAAG 345 consensus_9668#1 GATGTGGTGGGTTTTGTGGGCGCCGAAGTGGGGAATGTGGTGCTGTGGAGGAGGAAGGAG 412 * * ** * * ** * * * * ** ** ** * ** ** consensus_9668#0 GCCGCGCGGCTGCTCAACAGGCCACCTCCACCTGTTCCACTGATCAAAATATCTGAAGAC 405 consensus_9668#1 GTGGC-CGGCTGGTCGCTGG--CGGCGGTGGCGGCGTCCTGGGTCC---TCTTCTATTGC 466 * ** ****** ** * * * * * * * ** * * * * consensus_9668#0 TCAATGAGCAAAGCAGCAGCTGCAGTGGGTAACATCCTACATAAGGCACTACAGGGTTTT 465 consensus_9668#1 TTGCCTGGCTACAC----GCTGCTCTCCTTCGTGTCCAGCGTGCT-CATGATCGTGCTCG 521 * ** * * ***** * * *** * * ** * * * * consensus_9668#0 GAAAACATTGCACACGGAAAGGACTCCAGTCTCTTTTACAAGATGGTTTCAGTATTACTG 525 consensus_9668#1 T----------------------------------------------------------- 522 consensus_9668#0 CTGATCTCCATAGTTGGCCGTGTGACTGATCTCATTACTTTGGTATATGCATGCCTTGTT 585 consensus_9668#1 ------------------------------------------------------------ consensus_9668#0 CTTGCTCTCACCATCCCTGCATTGGTGGATAAATATGAAGAAAACATTGCCAAGTTCTTA 645 consensus_9668#1 ------------------------------------------------------------ consensus_9668#0 AATCAAGCGTCAGCAAATATTCAGGCATGTGGACAAGCATGGAAAGCATATAAATCTAAG 705 consensus_9668#1 ------------------------------------------------------------ consensus_9668#0 ATTAAGAACTGATCTTGGAAAACAATAAACTGTTTTGATCTCATTGTACAGTTGTCAACA 765 consensus_9668#1 ------------------------------------------------------------ consensus_9668#0 AAATTTTGCCTTGTATACTTGTCTTCCTAGAGTTAAACATGTTGACATCCGTCTTACTGC 825 consensus_9668#1 ------------------------------------------------------------ consensus_9668#0 TCTGTCTGACTGTCTATATACTTCAGTCTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAA 885 consensus_9668#1 ------------------------------------------------------------ consensus_9668#0 AAAACACTGTTCATGCCGT 904 consensus_9668#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||