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Oryza sativa
cluster # 9669 cluster # 9669       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9669#0 length = 1376 sequences # 5  
consensus_9669#1 length = 293 sequences # 1  

consensusID : consensus_9669#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1376
fasta sequence
                              [CATTTCTTCGAGCAGGTGAGGCGCACGCGCACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCGCCGCGCGCCGCCTCCTCTCCCGCTCCGCCGCCGCCGCGTCCCGCCGCCTCGTCCCCTGCGCCTCGTCCGCGACCCCGCGCGCTGCCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCCTCGACGCCGCCACCGACGCCGCCGACGCCACCACTCCCGCCGCCGCCTCTGGAGCCCACCGTCGAGCCGCCCAAGTCGGAGGGCGCCTCCTCCTCTTCCGCCTCGTCTTCCGCCGGCGCCGGAGGAGCCCATCGGTCGGCGCCGGGGGCCTCGGCGGGGGCTCGCCGCGCCGGCGGCACGGGCTACGAGGAGGAGCAGGAGAAAGTGCTCCGCGCGTCGCTGCTCCACGTGCCAAGGATGGGGTGGAGCGAGTCAGCCATGATCGCCGGGGCGAGGGACGTGGGCGTGTCGCCGGCCATCGTCGGTGCTTTCCCGAGGAAGGAGGCTGCGCTCGTTGAGTTTTTCATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTGAAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAGGGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA-GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA-TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTT-CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATG-TACATAATAGCATGTTTTTTTACGATGAAATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTAC---TTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCAATTAGAAATAATGTCAGTGGTT]

[+] EMBL AK108624             [CATTTCTTCGAGCAGGTGAGGCGCACGCGCACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCGCCGCGCGCCGCCTCCTCTCCCGCTCCGCCGCCGCCGCGTCCCGCCGCCTCGTCCCCTGCGCCTCGTCCGCGACCCCGCGCGCTGCCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCCTCGACGCCGCCACCGACGCCGCCGACGCCACCACTCCCGCCGCCGCCTCTGGAGCCCACCGTCGAGCCGCCCAAGTCGGAGGGCGCCTCCTCCTCTTCCGCCTCGTCTTCCGCCGGCGCCGGAGGAGCCCATCGGTCGGCGCCGGGGGCCTCGGCGGGGGCTCGCCGCGCCGGCGGCACGGGCTACGAGGAGGAGCAGGAGAAAGTGCTCCGCGCGTCGCTGCTCCACGTGCCAAGGATGGGGTGGAGCGAGTCAGCCATGATCGCCGGGGCGAGGGACGTGGGCGTGTCGCCGGCCATCGTCGGTGCTTTCCCGAGGAAGGAGGCTGCGCTCGTTGAGTTTTTCATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTGAAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAGGGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTT CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATG TACATAATAGCATGTTTTTTTACGATGAAATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTAC   TTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCAATTAGAAATAATGTCAGTGGTT]
[+] EMBL BQ906814             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gaGCTGCGCTCGTTGAGTTTTTCATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTGAAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAGGGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCC CCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATGCTTTTCATTCTCGACATTT CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGC AACTGGATTTTGATCAaaaaaa                                                                                                                                                                                                                                      ]
[-] EMBL CF305039             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTT CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATG TACATAATAGCATGTTTTTTTACGATGAAATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTAC   TTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTGGTTTCGTCTTC                        ]
[+] EMBL AU222548             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTNTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTT CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTGATCAaaaaa                                                                                                                                                                                                                                       ]
[+] EMBL BI802837             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGTAT TGAACGC TACTGT CTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGA CC CCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCACTGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTTCCCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCCAGTTAAATAAAGCCAACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATGCTACATAGTAGCATGTTTTTTTACGATGAAATATCGTCAGGACCCACATGCGCACCAAGATGAGGTTGCTAGATCTACTTATTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCCATTAGAAAAAAaaaa       ]


>consensus_9669#0 CATTTCTTCGAGCAGGTGAGGCGCACGCGCACTTCGCCGCTCCGCTGCACCCCCACGATG GCCTCCTCCCTCGCCGCGCGCCGCCTCCTCTCCCGCTCCGCCGCCGCCGCGTCCCGCCGC CTCGTCCCCTGCGCCTCGTCCGCGACCCCGCGCGCTGCCCCCGCTGCTCTGCGCCGCTTC TTCTCTGCGGAAGCCTCGACGCCGCCACCGACGCCGCCGACGCCACCACTCCCGCCGCCG CCTCTGGAGCCCACCGTCGAGCCGCCCAAGTCGGAGGGCGCCTCCTCCTCTTCCGCCTCG TCTTCCGCCGGCGCCGGAGGAGCCCATCGGTCGGCGCCGGGGGCCTCGGCGGGGGCTCGC CGCGCCGGCGGCACGGGCTACGAGGAGGAGCAGGAGAAAGTGCTCCGCGCGTCGCTGCTC CACGTGCCAAGGATGGGGTGGAGCGAGTCAGCCATGATCGCCGGGGCGAGGGACGTGGGC GTGTCGCCGGCCATCGTCGGTGCTTTCCCGAGGAAGGAGGCTGCGCTCGTTGAGTTTTTC ATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTG AAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAG GGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATT TCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGAT GCTGGATCAGATATTGATTGGTATGTGAAGCGTACTGTGCTTGGTGGTATCTACTCTACC TCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTG AGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTA GCAGAAGCCGTCGGTGCAGGCATGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTC AAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTTCCAATATAT ATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTG ATCACGATTTGCCTACGCTGGTAGTGATGATGTACATAATAGCATGTTTTTTTACGATGA AATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTACTTAACACTTGA GTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAAT GTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCAATTAGAAATAATGTCAGTGGTT



consensusID : consensus_9669#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence
                              [ACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCTCCGCGCGCCGNCTCCTCTCCCGCTCCGTCGCCGTCGNGTCCCGTNGACTCGTCCCCTGCGCCTCGTCCGCGACCNCGCGCGNTGNCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCTCGACGCCGTCACCGACGCCGCTGCGCACCACTCCCGCGCGCTCTGGAGCCACCGCGAGCGCCAAGCGAGGCGCTCCTCTCTTCGCTCGCTTCGCGNGCGAGAGCCATCGTCGCGCGTGGGCTCGCGTG]

[+] EMBL C28431               [ACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCTCCGCGCGCCGNCTCCTCTCCCGCTCCGTCGCCGTCGNGTCCCGTNGACTCGTCCCCTGCGCCTCGTCCGCGACCNCGCGCGNTGNCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCTCGACGCCGTCACCGACGCCGCTGCGCACCACTCCCGCGCGCTCTGGAGCCACCGCGAGCGCCAAGCGAGGCGCTCCTCTCTTCGCTCGCTTCGCGNGCGAGAGCCATCGTCGCGCGTGGGCTCGCGTG]


>consensus_9669#1 ACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCTCCGCGCGCCGNCTCCTC TCCCGCTCCGTCGCCGTCGNGTCCCGTNGACTCGTCCCCTGCGCCTCGTCCGCGACCNCG CGCGNTGNCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCTCGACGCCGTCACCGA CGCCGCTGCGCACCACTCCCGCGCGCTCTGGAGCCACCGCGAGCGCCAAGCGAGGCGCTC CTCTCTTCGCTCGCTTCGCGNGCGAGAGCCATCGTCGCGCGTGGGCTCGCGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9669#0      CATTTCTTCGAGCAGGTGAGGCGCACGCGCACTTCGCCGCTCCGCTGCACCCCCACGATG 60
consensus_9669#1      ------------------------------ACTTCGCCGCTCCGCTGCACCCCCACGATG 30
                                                    ******************************

consensus_9669#0      GCCTCCTCCCTCGCCGCGCGCCGCCTCCTCTCCCGCTCCGCCGCCGCCGCGTCCCGCCGC 120
consensus_9669#1      GCCTCCTCCCTCTCCGCGCGCCGNCTCCTCTCCCGCTCCGTCGCCGTCGNGTCCCGTNGA 90
                      ************ ********** **************** ***** ** ******  * 

consensus_9669#0      CTCGTCCCCTGCGCCTCGTCCGCGACCCCGCGCGCTGCCCCCGCTGCTCTGCGCCGCTTC 180
consensus_9669#1      CTCGTCCCCTGCGCCTCGTCCGCGACCNCGCGCGNTGNCCCCGCTGCTCTGCGCCGCTTC 150
                      *************************** ****** ** **********************

consensus_9669#0      TTCTCTGCGGAAGCCTCGACGCCGCCACCGACGCCGCCGACGCCACCACTCCCGCCGCCG 240
consensus_9669#1      TTCTCTGCGGAAGC-TCGACGCCGTCACCGACGCCGCTG-CGC-ACCACTCCCGCG--CG 205
                      ************** ********* ************ * *** ***********   **

consensus_9669#0      CCTCTGGAGCCCACCGTCGAGCCGCCCAAGTCGGAGGGCGCCTCCTCCTCTTCCGCCTCG 300
consensus_9669#1      C-TCTGGAGCC-ACCG-CGAGCG--CCAAG-CGAGGCGCTCCTC-TCTTCGCTCGCTTCG 258
                      * ********* **** *****   ***** **  * ** **** ** **   *** ***

consensus_9669#0      TCTTCCGCCGGCGCCGGAGGAGCCCATCGGTCGGCGCCGGGGGCCTCGGCGGGGGCTCGC 360
consensus_9669#1      CGN---GCGAGAGCCATCGTCGCGCGTGGGCTCGCGTG---------------------- 293
                            **  * ***   *  ** * * **   ***                        

consensus_9669#0      CGCGCCGGCGGCACGGGCTACGAGGAGGAGCAGGAGAAAGTGCTCCGCGCGTCGCTGCTC 420
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      CACGTGCCAAGGATGGGGTGGAGCGAGTCAGCCATGATCGCCGGGGCGAGGGACGTGGGC 480
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      GTGTCGCCGGCCATCGTCGGTGCTTTCCCGAGGAAGGAGGCTGCGCTCGTTGAGTTTTTC 540
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      ATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTG 600
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      AAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAG 660
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      GGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATT 720
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      TCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGAT 780
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      GCTGGATCAGATATTGATTGGTATGTGAAGCGTACTGTGCTTGGTGGTATCTACTCTACC 840
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      TCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTG 900
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      AGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTA 960
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      GCAGAAGCCGTCGGTGCAGGCATGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTC 1020
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      AAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTTCCAATATAT 1080
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      ATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTG 1140
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      ATCACGATTTGCCTACGCTGGTAGTGATGATGTACATAATAGCATGTTTTTTTACGATGA 1200
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      AATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTACTTAACACTTGA 1260
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      GTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAAT 1320
consensus_9669#1      ------------------------------------------------------------
                                                                                  

consensus_9669#0      GTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCAATTAGAAATAATGTCAGTGGTT 1376
consensus_9669#1      --------------------------------------------------------
                                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)