These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1376 fasta sequence [CATTTCTTCGAGCAGGTGAGGCGCACGCGCACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCGCCGCGCGCCGCCTCCTCTCCCGCTCCGCCGCCGCCGCGTCCCGCCGCCTCGTCCCCTGCGCCTCGTCCGCGACCCCGCGCGCTGCCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCCTCGACGCCGCCACCGACGCCGCCGACGCCACCACTCCCGCCGCCGCCTCTGGAGCCCACCGTCGAGCCGCCCAAGTCGGAGGGCGCCTCCTCCTCTTCCGCCTCGTCTTCCGCCGGCGCCGGAGGAGCCCATCGGTCGGCGCCGGGGGCCTCGGCGGGGGCTCGCCGCGCCGGCGGCACGGGCTACGAGGAGGAGCAGGAGAAAGTGCTCCGCGCGTCGCTGCTCCACGTGCCAAGGATGGGGTGGAGCGAGTCAGCCATGATCGCCGGGGCGAGGGACGTGGGCGTGTCGCCGGCCATCGTCGGTGCTTTCCCGAGGAAGGAGGCTGCGCTCGTTGAGTTTTTCATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTGAAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAGGGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA-GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA-TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTT-CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATG-TACATAATAGCATGTTTTTTTACGATGAAATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTAC---TTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCAATTAGAAATAATGTCAGTGGTT] [+] EMBL AK108624 [CATTTCTTCGAGCAGGTGAGGCGCACGCGCACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCGCCGCGCGCCGCCTCCTCTCCCGCTCCGCCGCCGCCGCGTCCCGCCGCCTCGTCCCCTGCGCCTCGTCCGCGACCCCGCGCGCTGCCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCCTCGACGCCGCCACCGACGCCGCCGACGCCACCACTCCCGCCGCCGCCTCTGGAGCCCACCGTCGAGCCGCCCAAGTCGGAGGGCGCCTCCTCCTCTTCCGCCTCGTCTTCCGCCGGCGCCGGAGGAGCCCATCGGTCGGCGCCGGGGGCCTCGGCGGGGGCTCGCCGCGCCGGCGGCACGGGCTACGAGGAGGAGCAGGAGAAAGTGCTCCGCGCGTCGCTGCTCCACGTGCCAAGGATGGGGTGGAGCGAGTCAGCCATGATCGCCGGGGCGAGGGACGTGGGCGTGTCGCCGGCCATCGTCGGTGCTTTCCCGAGGAAGGAGGCTGCGCTCGTTGAGTTTTTCATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTGAAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAGGGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTT CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATG TACATAATAGCATGTTTTTTTACGATGAAATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTAC TTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCAATTAGAAATAATGTCAGTGGTT] [+] EMBL BQ906814 [ gaGCTGCGCTCGTTGAGTTTTTCATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTGAAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAGGGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCC CCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATGCTTTTCATTCTCGACATTT CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGC AACTGGATTTTGATCAaaaaaa ] [-] EMBL CF305039 [ TCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTT CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATG TACATAATAGCATGTTTTTTTACGATGAAATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTAC TTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTGGTTTCGTCTTC ] [+] EMBL AU222548 [ ACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTNTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTT CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTGATCAaaaaa ] [+] EMBL BI802837 [ GGTAT TGAACGC TACTGT CTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGA CC CCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCACTGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTTCCCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCCAGTTAAATAAAGCCAACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATGCTACATAGTAGCATGTTTTTTTACGATGAAATATCGTCAGGACCCACATGCGCACCAAGATGAGGTTGCTAGATCTACTTATTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCCATTAGAAAAAAaaaa ] consensusID : consensus_9669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [ACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCTCCGCGCGCCGNCTCCTCTCCCGCTCCGTCGCCGTCGNGTCCCGTNGACTCGTCCCCTGCGCCTCGTCCGCGACCNCGCGCGNTGNCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCTCGACGCCGTCACCGACGCCGCTGCGCACCACTCCCGCGCGCTCTGGAGCCACCGCGAGCGCCAAGCGAGGCGCTCCTCTCTTCGCTCGCTTCGCGNGCGAGAGCCATCGTCGCGCGTGGGCTCGCGTG] [+] EMBL C28431 [ACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCTCCGCGCGCCGNCTCCTCTCCCGCTCCGTCGCCGTCGNGTCCCGTNGACTCGTCCCCTGCGCCTCGTCCGCGACCNCGCGCGNTGNCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCTCGACGCCGTCACCGACGCCGCTGCGCACCACTCCCGCGCGCTCTGGAGCCACCGCGAGCGCCAAGCGAGGCGCTCCTCTCTTCGCTCGCTTCGCGNGCGAGAGCCATCGTCGCGCGTGGGCTCGCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9669#0 CATTTCTTCGAGCAGGTGAGGCGCACGCGCACTTCGCCGCTCCGCTGCACCCCCACGATG 60 consensus_9669#1 ------------------------------ACTTCGCCGCTCCGCTGCACCCCCACGATG 30 ****************************** consensus_9669#0 GCCTCCTCCCTCGCCGCGCGCCGCCTCCTCTCCCGCTCCGCCGCCGCCGCGTCCCGCCGC 120 consensus_9669#1 GCCTCCTCCCTCTCCGCGCGCCGNCTCCTCTCCCGCTCCGTCGCCGTCGNGTCCCGTNGA 90 ************ ********** **************** ***** ** ****** * consensus_9669#0 CTCGTCCCCTGCGCCTCGTCCGCGACCCCGCGCGCTGCCCCCGCTGCTCTGCGCCGCTTC 180 consensus_9669#1 CTCGTCCCCTGCGCCTCGTCCGCGACCNCGCGCGNTGNCCCCGCTGCTCTGCGCCGCTTC 150 *************************** ****** ** ********************** consensus_9669#0 TTCTCTGCGGAAGCCTCGACGCCGCCACCGACGCCGCCGACGCCACCACTCCCGCCGCCG 240 consensus_9669#1 TTCTCTGCGGAAGC-TCGACGCCGTCACCGACGCCGCTG-CGC-ACCACTCCCGCG--CG 205 ************** ********* ************ * *** *********** ** consensus_9669#0 CCTCTGGAGCCCACCGTCGAGCCGCCCAAGTCGGAGGGCGCCTCCTCCTCTTCCGCCTCG 300 consensus_9669#1 C-TCTGGAGCC-ACCG-CGAGCG--CCAAG-CGAGGCGCTCCTC-TCTTCGCTCGCTTCG 258 * ********* **** ***** ***** ** * ** **** ** ** *** *** consensus_9669#0 TCTTCCGCCGGCGCCGGAGGAGCCCATCGGTCGGCGCCGGGGGCCTCGGCGGGGGCTCGC 360 consensus_9669#1 CGN---GCGAGAGCCATCGTCGCGCGTGGGCTCGCGTG---------------------- 293 ** * *** * ** * * ** *** consensus_9669#0 CGCGCCGGCGGCACGGGCTACGAGGAGGAGCAGGAGAAAGTGCTCCGCGCGTCGCTGCTC 420 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 CACGTGCCAAGGATGGGGTGGAGCGAGTCAGCCATGATCGCCGGGGCGAGGGACGTGGGC 480 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 GTGTCGCCGGCCATCGTCGGTGCTTTCCCGAGGAAGGAGGCTGCGCTCGTTGAGTTTTTC 540 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 ATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTG 600 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 AAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAG 660 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 GGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATT 720 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 TCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGAT 780 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 GCTGGATCAGATATTGATTGGTATGTGAAGCGTACTGTGCTTGGTGGTATCTACTCTACC 840 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 TCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTG 900 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 AGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTA 960 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 GCAGAAGCCGTCGGTGCAGGCATGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTC 1020 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 AAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTTCCAATATAT 1080 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 ATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTG 1140 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 ATCACGATTTGCCTACGCTGGTAGTGATGATGTACATAATAGCATGTTTTTTTACGATGA 1200 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 AATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTACTTAACACTTGA 1260 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 GTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAAT 1320 consensus_9669#1 ------------------------------------------------------------ consensus_9669#0 GTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCAATTAGAAATAATGTCAGTGGTT 1376 consensus_9669#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||