These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1937 fasta sequence [ATACCACTGAGCAATTGCAACCATTCCATTCCATTCGATCCATTCTAGCTAGCTTATCTCCTCCAGCATTTTGGAGAGAGCTCTATCTTTCTGCTACTTCGCTTGAGAGAATTTCCATGTTTTCATCTGCAGCCATGCAGCAGCTCAAAGACGATGGGTCGTCCGCGAGGCAGCTACAGCTGCTCGTCGCCGCGCTGTCGACGGCCGGAGCTGTGGCGGCCGCCGCCGTCGTGCGACGCAGGCACGGGAGGAAGGCCGCCGCAGCCGCAGCCGCAGCCGCCGCGGCGCCGCCGCCGGTGGTGATGAGGGAAATGCCGAGGCTGGTGATGGCGGAGTCCGGCCGCGTCGAGCACATCGAGAAGTTCTCTCACTACGTCGCTAGGCAGATGGGGTTTCAGGACATAAATGAGTGCCCACAGCTGTGCAAATTAGCAAATAACTACCTCAAGAGGACCAAGAATTGCATGGATGACATCGATGACTTCTTCGCAAATATCCTGGATTCGGAGTCCCTTTATGTCAAGTTCATAGAAGAGTTGGATAAATGCATTCTTGGATATTTTGCGTTCCATTGGGACCATGCTACCGCTCTTATCAGCCAGGCCTTGACCGTAGACTGTGGCACCGCCAGCAAGAAGAAGCTAAGGAACCTCGTGTTGGAAGCTACAAGGAAGCAGAGGTTTGAGCGGGTGACGAGGGACCTGAAGGTGACGAGGGTGTTCTCGACGCTGGTGGAGGAGATGAAGGCGATCGGCGTCCCGACGGCGGCGATGAACGGCGACGGCGAGGAGGAGCCGCACTGCACCGACGTGATGGCGCCGGTGGCGCACGACGAGCGGAGCCCCGTGCTGCTGCTCATGGGCGGTGGGATGGGCGCCGGCAAGAGCACCGTGCTCAAGGAGATTCTCCAGGAGCCACTGTGGTCCAAGGACGAGGCGAATGCGGTGGTGGTTGAGGCGGATGCGTTCAAGGAGACGGACGTGATCTACCGTGCCATTAGCTCCATGGGCCACCACAACGACATGCTCCAGACTGCTGAGCTGGTGCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCTGAACGAGGGTCGTGACGTCATCCTCGACGGTACCCTCTCCTGGGAGCCGTTCGTCCAGCAGACCATCGCCATGGCGCGCGACGTCCACCGCCGCCGCTACCGCATGGGCCCCGGCTACAAGGTCGACCCCGACACCGGCGACATCACCGAGAACTACTGGGAGCCCGCCGACGCCGACGCCGCCTCGCCGCCGCCGACCAGGAAGCCTTACCGGATCGAGGTCGCCGGCGTGGTCTGCGACGCGTACCTCGCCGTGGCGAGGGGGATCCGGCGCGCCATCGTGACGGGGCGGGCGGTGCGGGTGCGGTCGCAGCTGGTGTCGCACAGGCGGTTCGCCGCCGCGTTCCGGCGGTACGCCGGCGCCGTGGACGGCGCGCGGCTGTACAGCACCAACACCATGGGCGCGGCGCGGCTGATCGCGCGCAAGGACGGCGTCGCCGGCAGCCTGCTGGTGGAGCCGGCGGAGTTCGCGTGCCTCGACGCGGTGGGCGGCCTCAACGAGAACGCCACCGGGGTGCACGACCTCTACCGCGGCGGCGCCACCGCCTGCGGCGCCCGCTCCATCTGGGACGACATGATCGCCTCGCCGGCGCGCGCCGACATCCAGAGGGAGCTCCGGGAGGCCTTCCGCTCCGTGGAGCACGCGCCGCCGAACACCAATGGCGCCTAGATATGGTGTGTGTGTGTTCAATATGTTTCCCCAGAAATTAATCATGTGGGGAACTAAATTTGTTGTTGATGTGTAAAGGGAGTGTATTAATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCGCGCAATTGCGCGGCTAGCATCCATAAAAAAATATTT] [+] EMBL AK099948 [ATACCACTGAGCAATTGCAACCATTCCATTCCATTCGATCCATTCTAGCTAGCTTATCTCCTCCAGCATTTTGGAGAGAGCTCTATCTTTCTGCTACTTCGCTTGAGAGAATTTCCATGTTTTCATCTGCAGCCATGCAGCAGCTCAAAGACGATGGGTCGTCCGCGAGGCAGCTACAGCTGCTCGTCGCCGCGCTGTCGACGGCCGGAGCTGTGGCGGCCGCCGCCGTCGTGCGACGCAGGCACGGGAGGAAGGCCGCCGCAGCCGCAGCCGCAGCCGCCGCGGCGCCGCCGCCGGTGGTGATGAGGGAAATGCCGAGGCTGGTGATGGCGGAGTCCGGCCGCGTCGAGCACATCGAGAAGTTCTCTCACTACGTCGCTAGGCAGATGGGGTTTCAGGACATAAATGAGTGCCCACAGCTGTGCAAATTAGCAAATAACTACCTCAAGAGGACCAAGAATTGCATGGATGACATCGATGACTTCTTCGCAAATATCCTGGATTCGGAGTCCCTTTATGTCAAGTTCATAGAAGAGTTGGATAAATGCATTCTTGGATATTTTGCGTTCCATTGGGACCATGCTACCGCTCTTATCAGCCAGGCCTTGACCGTAGACTGTGGCACCGCCAGCAAGAAGAAGCTAAGGAACCTCGTGTTGGAAGCTACAAGGAAGCAGAGGTTTGAGCGGGTGACGAGGGACCTGAAGGTGACGAGGGTGTTCTCGACGCTGGTGGAGGAGATGAAGGCGATCGGCGTCCCGACGGCGGCGATGAACGGCGACGGCGAGGAGGAGCCGCACTGCACCGACGTGATGGCGCCGGTGGCGCACGACGAGCGGAGCCCCGTGCTGCTGCTCATGGGCGGTGGGATGGGCGCCGGCAAGAGCACCGTGCTCAAGGAGATTCTCCAGGAGCCACTGTGGTCCAAGGACGAGGCGAATGCGGTGGTGGTTGAGGCGGATGCGTTCAAGGAGACGGACGTGATCTACCGTGCCATTAGCTCCATGGGCCACCACAACGACATGCTCCAGACTGCTGAGCTGGTGCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGCTGGTGACGGCGCTGAACGAGGGTCGTGACGTCATCCTCGACGGTACCCTCTCCTGGGAGCCGTTCGTCCAGCAGACCATCGCCATGGCGCGCGACGTCCACCGCCGCCGCTACCGCATGGGCCCCGGCTACAAGGTCGACCCCGACACCGGCGACATCACCGAGAACTACTGGGAGCCCGCCGACGCCGACGCCGCCTCGCCGCCGCCGACCAGGAAGCCTTACCGGATCGAGGTCGCCGGCGTGGTCTGCGACGCGTACCTCGCCGTGGCGAGGGGGATCCGGCGCGCCATCGTGACGGGGCGGGCGGTGCGGGTGCGGTCGCAGCTGGTGTCGCACAGGCGGTTCGCCGCCGCGTTCCGGCGGTACGCCGGCGCCGTGGACGGCGCGCGGCTGTACAGCACCAACACCATGGGCGCGGCGCGGCTGATCGCGCGCAAGGACGGCGTCGCCGGCAGCCTGCTGGTGGAGCCGGCGGAGTTCGCGTGCCTCGACGCGGTGGGCGGCCTCAACGAGAACGCCACCGGGGTGCACGACCTCTACCGCGGCGGCGCCACCGCCTGCGGCGCCCGCTCCATCTGGGACGACATGATCGCCTCGCCGGCGCGCGCCGACATCCAGAGGGAGCTCCGGGAGGCCTTCCGCTCCGTGGAGCACGCGCCGCCGAACACCAATGGCGCCTAGATATGGTGTGTGTGTGTTCAATATGTTTCCCCAGAAATTAATCATGTGGGGAACTAAATTTGTTGTTGATGTGTAAAGGGAGTGTATTAATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCGCGCAATTGCGCGGCTAGCATCCATAAAAAAATATTT] [+] EMBL CB679014 [ ATTCTCTCTAGCTTATCTCCTCCAGCATTTTGGAGAGAGCTCTATCTTTCTGCTACTTCGCTTGAGAGAATTTCCATGTTTTCATCTGCAGCCATGCAGCAGCTCAAAGACGATGGGTCGTCCGCGAGGCAGCTACAGCTGCTCGTCGCCGCGCTGTCGACGGCCGGAGCTGTGGCGGCCGCCGCCGTCGTGCGACGCAGGCACGGGAGGAAGGCCGCCGCAGCCGCAGCCGCAGCCGCCGCGGCGCCGCCGCCGGTGGTGATGAGGGAAATGCCGAGGCTGGTGATGGCGGAGTCCGGCCGCGTCGAGCACATCGAGAAGTTCTCTCACTACGTCGCTAGGCAGATGGGGTTTCAGGACATAAATGAGTGCCCACAGCTGTGCAAATTAGCAAATAACTACCTCAAGAGGACCAAGAATTGCATGGATGACATCGATGACTTCTTCGCAAATATCCTGGATTCGGAGTCCCTTTATGTCAAGTTCATAGAAGAGTTGGATAAATGCATTCTTGGATATTTTGCGTTCCATTGGGACCATGCTACCGCTCTTATCAGCCAGGCCTTGACCGTAGACTGTGGCACCGCCAGCAAGAAGAAGCTAAGGAACCTCGTGTTGGAAGCTACAAGGAAGCAGAGGTTTGAGCGGGTGACGAGGGACCTGAAGGTGACGAGGGTGTTCTCGACGCTGGTGGAGGAGATGAAGGCGATCGGCGTCCCGACGGCGGCGATGAACGGCGACGGCGAGGAGGAGCCGCACTGCACCGACGTGATGGCGCCGGTGGCGCACGACGAGCGGAGCCCCGTGCTGCT ] [-] EMBL CB679015 [ CGCCGACGCNGACGCCGCCTCGCCGCCGCCGACCAGGAAGCCTTACCGGATCGAGGTCGCCGGCGTGGTCTGCGACGCGTACCTCGCCGTGGCGAGGGGGATCCGGCGCGCCATCGTGACGGGGCGGGCGGTGCGGGTGCGGTCGCAGCTGGTGTCGCACAGGCGGTTCGCCGCCGCGTTCCGGCGGTACGCCGGCGCCGTGGACGGCGCGCGGCTGTACAGCACCAACACCATGGGCGCGGCGCGGCTGATCGCGCGCAAGGACGGCGTCGCCGGCAGCCTGCTGGTGGAGCCGGCGGAGTTCGCGTGCCTCGACGCGGTGGGCGGCCTCAACGAGAACGCCACCGGGGTGCACGACCTCTACCGCGGCGGCGCCACCGCCTGCGGCGCCCGCTCCATCTGGGACGACATGATCGCCTCGCCGGCGCGCGCCGACATCCAGAGGGAGCTCCGGGAGGCCTTCCGCTCCGTGGAGCACGCGCCGCCGAACACCAATGGCGCCTAGATATGGTGTGTGTGTGTTCAATATGTTTCCCCAGAAATTAATCATGTGGGGAACTAAATTTGTTGTTGATGTGTAAAGGGAGTGTATTAATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCGCGCAATTGCGCGGCTAGCATCCATAAAAAAATATTT] [-] EMBL OSS0944A [ TGTTCAATATGTTNCCCCAGAAATTAANCATGTGGGGAACTAAATTTGTTGTTGATGTGTAAAGGGAGTGTATTAATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGNCCCCGNAATTGCGNGGCTAGCATCNNTNAAAA ] consensusID : consensus_9677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence [TTTNCCCAGAAATTANNNATNTNGGGNNCTAAATTTGTTGTTNATGTGTAANNGGNGTGTATTAATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTNGGGTGGCCCCCGNAATTGCGNGGCTAGCATCCATNAAAAAATATTTAAT] [-] EMBL OSS0934A [TTTNCCCAGAAATTANNNATNTNGGGNNCTAAATTTGTTGTTNATGTGTAANNGGNGTGTATTAATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTNGGGTGGCCCCCGNAATTGCGNGGCTAGCATCCATNAAAAAATATTTAAT] consensusID : consensus_9677#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 140 fasta sequence [ATTAAANNTGTNNGGNACNAAANTTGTTGTTGATGTGTAAAGGGNGTGTATTNATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCCGCAATTGCGCGGCTAGCATCCTTNAANAAATATTTAAT] [-] EMBL OSS1071A [ATTAAANNTGTNNGGNACNAAANTTGTTGTTGATGTGTAAAGGGNGTGTATTNATTTGTGGTAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCCGCAATTGCGCGGCTAGCATCCTTNAANAAATATTTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9677#0 ATACCACTGAGCAATTGCAACCATTCCATTCCATTCGATCCATTCTAGCTAGCTTATCTC 60 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 CTCCAGCATTTTGGAGAGAGCTCTATCTTTCTGCTACTTCGCTTGAGAGAATTTCCATGT 120 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 TTTCATCTGCAGCCATGCAGCAGCTCAAAGACGATGGGTCGTCCGCGAGGCAGCTACAGC 180 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 TGCTCGTCGCCGCGCTGTCGACGGCCGGAGCTGTGGCGGCCGCCGCCGTCGTGCGACGCA 240 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 GGCACGGGAGGAAGGCCGCCGCAGCCGCAGCCGCAGCCGCCGCGGCGCCGCCGCCGGTGG 300 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 TGATGAGGGAAATGCCGAGGCTGGTGATGGCGGAGTCCGGCCGCGTCGAGCACATCGAGA 360 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 AGTTCTCTCACTACGTCGCTAGGCAGATGGGGTTTCAGGACATAAATGAGTGCCCACAGC 420 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 TGTGCAAATTAGCAAATAACTACCTCAAGAGGACCAAGAATTGCATGGATGACATCGATG 480 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 ACTTCTTCGCAAATATCCTGGATTCGGAGTCCCTTTATGTCAAGTTCATAGAAGAGTTGG 540 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 ATAAATGCATTCTTGGATATTTTGCGTTCCATTGGGACCATGCTACCGCTCTTATCAGCC 600 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 AGGCCTTGACCGTAGACTGTGGCACCGCCAGCAAGAAGAAGCTAAGGAACCTCGTGTTGG 660 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 AAGCTACAAGGAAGCAGAGGTTTGAGCGGGTGACGAGGGACCTGAAGGTGACGAGGGTGT 720 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 TCTCGACGCTGGTGGAGGAGATGAAGGCGATCGGCGTCCCGACGGCGGCGATGAACGGCG 780 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 ACGGCGAGGAGGAGCCGCACTGCACCGACGTGATGGCGCCGGTGGCGCACGACGAGCGGA 840 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 GCCCCGTGCTGCTGCTCATGGGCGGTGGGATGGGCGCCGGCAAGAGCACCGTGCTCAAGG 900 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 AGATTCTCCAGGAGCCACTGTGGTCCAAGGACGAGGCGAATGCGGTGGTGGTTGAGGCGG 960 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 ATGCGTTCAAGGAGACGGACGTGATCTACCGTGCCATTAGCTCCATGGGCCACCACAACG 1020 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 ACATGCTCCAGACTGCTGAGCTGGTGCACCAGTCGTCGACGGACGCGGCGTCGTCGCTGC 1080 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 TGGTGACGGCGCTGAACGAGGGTCGTGACGTCATCCTCGACGGTACCCTCTCCTGGGAGC 1140 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 CGTTCGTCCAGCAGACCATCGCCATGGCGCGCGACGTCCACCGCCGCCGCTACCGCATGG 1200 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 GCCCCGGCTACAAGGTCGACCCCGACACCGGCGACATCACCGAGAACTACTGGGAGCCCG 1260 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 CCGACGCCGACGCCGCCTCGCCGCCGCCGACCAGGAAGCCTTACCGGATCGAGGTCGCCG 1320 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 GCGTGGTCTGCGACGCGTACCTCGCCGTGGCGAGGGGGATCCGGCGCGCCATCGTGACGG 1380 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 GGCGGGCGGTGCGGGTGCGGTCGCAGCTGGTGTCGCACAGGCGGTTCGCCGCCGCGTTCC 1440 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 GGCGGTACGCCGGCGCCGTGGACGGCGCGCGGCTGTACAGCACCAACACCATGGGCGCGG 1500 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 CGCGGCTGATCGCGCGCAAGGACGGCGTCGCCGGCAGCCTGCTGGTGGAGCCGGCGGAGT 1560 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 TCGCGTGCCTCGACGCGGTGGGCGGCCTCAACGAGAACGCCACCGGGGTGCACGACCTCT 1620 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 ACCGCGGCGGCGCCACCGCCTGCGGCGCCCGCTCCATCTGGGACGACATGATCGCCTCGC 1680 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 CGGCGCGCGCCGACATCCAGAGGGAGCTCCGGGAGGCCTTCCGCTCCGTGGAGCACGCGC 1740 consensus_9677#2 ------------------------------------------------------------ consensus_9677#1 ------------------------------------------------------------ consensus_9677#0 CGCCGAACACCAATGGCGCCTAGATATGGTGTGTGTGTGTTCAATATGTTTCCCCAGAAA 1800 consensus_9677#2 -----------------------------------------------------------A 1 consensus_9677#1 ------------------------------------------------TTTNCCCAGAAA 12 * consensus_9677#0 TTAATCATGTGGGGAACTAAATTTGTTGTTGATGTGTAAAGGGAGTGTATTAATTTGTGG 1860 consensus_9677#2 TTAAANNTGTNNGGNACNAAANTTGTTGTTGATGTGTAAAGGGNGTGTATTNATTTGTGG 61 consensus_9677#1 TTANNNATNTNGGGNNCTAAATTTGTTGTTNATGTGTAANNGGNGTGTATTAATTTGTGG 72 *** * * ** * *** ******** ******** ** ******* ******** consensus_9677#0 TAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCCGCGCAATTGCGCGGCTAGCA 1920 consensus_9677#2 TAAATGGATGTGCTTATTATATGAACTAGTAGGGTGGCCC-CGCAATTGCGCGGCTAGCA 120 consensus_9677#1 TAAATGGATGTGCTTATTATATGAACTAGTNGGGTGGCCCCCGNAATTGCGNGGCTAGCA 132 ****************************** ********* ** ******* ******** consensus_9677#0 TCCATAAAAAAATATTT--- 1937 consensus_9677#2 TCCTTNAANAAATATTTAAT 140 consensus_9677#1 TCCATNAAAAAATATTTAAT 152 *** * ** ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||