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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9679#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 676 fasta sequence
[GATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTAGTAAGTATGCCACACTGAGCCCGCGATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGAAGCGACGGTGCCGAAGCACCAATACCATGTTTTTGACCACCTCTAGTACTAACCTATTTTTTAATATCAATATTGTAGTACGTACACTTTAGACAAACAC-ATATTTTTTTACTCTTCATCTAACGGGTACTGTGTTAATTAGTTGAGCGGTGGTTGAACACCGT-AACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTTTTGATTCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAACTGAAAGCGCCGACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCTTTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGATCAACAGGCTGCCACTCTCATCAACTCTGCCGACAAGGCACTGAA]
[+] EMBL CF279561 [GATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTAGTAAGTATGCCACACTGAGCCCGCGATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGAAGCGACGGTGCCGAAGCACCAATACCATGTTTTTGACCACCTCTAGTACTAACCTATTTTTTAATATCAATATTGTAGTACGTACACTTTAGACAAACAC ATATTTTTTTACTCTTCATCTAACGGGTACTGTGTTAATTAGTTGAGCGGTGGTTGAACACCGT AACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTTTTGATTCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAACTGAAAGCGCCGACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCTTTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGA ]
[-] EMBL CF279560 [ tcTAATATCAATATTGTAGTACGTACACTTTAGACAAACACNATATAGCATTACTCTTCATCTAACGGGTACTGTGTTAATTAGTTGAGCGGTGGTTGAACACCGTNAACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTTTTGATTCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAACTGAAAGCGCCGACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCTTTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGATCAACAGGCTGCCACTCTCATCAACTCTGCCGACAAGGCACTGAA]
consensusID : consensus_9679#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 593 fasta sequence
[TGCCACACTGAGCCCGCGATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGAAGCGACGGTGCCGAAGCACC--AATACCATGTTTTTGACCACCTCTAGTACTAGCCTATTTTCTAATAT-CAATATTGTAGTACGTACACTTTAGACAAACACATATAGCATTACTCTTCATCTAACGGGTACTGTGTTAATTGGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTGCTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACATGATAGTTAATCATACATTAATTCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCTCCGGAACTTTTTATAATTCAAAATTTAATTAATCAATGATGAACTCGTTTGAACATTCTTCTTCTTCGTGATTTGTTTATGGACAGCTAATTACTACTTTCGAATTCCATC]
[-] EMBL CB096352 [TGCCACACTGAGCCCGCGATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGAAGCGACGGTGCCGAAGCACC AATACCATGTTTTTGACCACCTCTAGTACTAGCCTATTTTCTAATAT CAATATTGTAGTACGTACACTTTAGACAAACACATATAGCATTACTCTTCATCTAACGGGTACTGTGTTAATTGGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTGCTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACATGATAGTTAATCATACATTAATTCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCTCCGGAACTTTTTATAATTCAAAATTTAATTAATCAATGATGAACTCGTTTGAACATTCTTCTTCTTCGTGATTTGTTTATGGACAGCTAATTACTACTTTCGAATTCCATC]
[-] EMBL OSR03911A [ AGAACCGACGGTGCCGAAGCACCCAAATNCCATGTTTTTGCCCACCTCTAGTACTAACCTATTCTCTAATATCCAATATTGTAGCACGTACACTTTAGACAAACACATATAGCATTACTCTTCATCTAACGGGTACTGTGTTAATTAGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACATGATAGTTAATCATACATTAATTCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCTCCGGAACTTTTTATAATTCAAAATT ]
consensusID : consensus_9679#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence
[NTGAANNNNGTNNNNNNNNNNNAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACATGATAGTTAATCATACATTAATTCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCTCCGGAACTTTTTATAATTCAAAATTTAATTAATCAATGATGAACTCGTTTGAACATTCTTCTTCTTCGTGATTTGTTTATGGACAGCTAATTACTACTTTCGAATTCCATCTGTATATACCTTTTGATTCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAACTGAAAGCGCCGACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCTTTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGATCAACAGGCTGCCACTCTCATCAACTC]
[-] EMBL CF196757 [NTGAANNNNGTNNNNNNNNNNNAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACATGATAGTTAATCATACATTAATTCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCTCCGGAACTTTTTATAATTCAAAATTTAATTAATCAATGATGAACTCGTTTGAACATTCTTCTTCTTCGTGATTTGTTTATGGACAGCTAATTACTACTTTCGAATTCCATCTGTATATACCTTTTGATTCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAACTGAAAGCGCCGACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCTTTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGATCAACAGGCTGCCACTCTCATCAACTC]
consensusID : consensus_9679#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[GATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGAAGCGACGGTGCCGAAGCACCAATACCATGTTTTTGACCACCTCTAGTACTAGCCTATTTTCTAATATCAATATTGTAGTACGTACACTTTAGACAAACACATATAGCATTACTCTTCATCTAACGGGTACTGTGTTAATTGGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTGCTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTTTTGATTAGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAA]
[+] EMBL BE040296 [GATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGAAGCGACGGTGCCGAAGCACCAATACCATGTTTTTGACCACCTCTAGTACTAGCCTATTTTCTAATATCAATATTGTAGTACGTACACTTTAGACAAACACATATAGCATTACTCTTCATCTAACGGGTACTGTGTTAATTGGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAGTCAGGTTCAGGTCTAATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTGCTTCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTTTTGATTAGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9679#0 GATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTAGTAAGTATGCCACA 60
consensus_9679#3 ------------------------------------------------------------
consensus_9679#1 -----------------------------------------------------TGCCACA 7
consensus_9679#2 ------------------------------------------------------------
consensus_9679#0 CTGAGCCCGCGATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGA 120
consensus_9679#3 ----------GATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGA 50
consensus_9679#1 CTGAGCCCGCGATAATATATATACTTCTTTCGATATTTATACAATGTTTATCGTACCAGA 67
consensus_9679#2 -----------NTGAANNNNGTNNNNNNNNNNNAGTCAGGTTCAGGTCTAATCATCAGTT 49
* * * * * ** ** *
consensus_9679#0 AGCGACGGTGCCGAAGCA---CCAATACCATGTTTTTGACCACCTCTAGTACTAACCTAT 177
consensus_9679#3 AGCGACGGTGCCGAAGCA---CCAATACCATGTTTTTGACCACCTCTAGTACTAGCCTAT 107
consensus_9679#1 AGCGACGGTGCCGAAGCA---CCAATACCATGTTTTTGACCACCTCTAGTACTAGCCTAT 124
consensus_9679#2 CGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCTGGAGATGGGTCATAGCGCC--CGTAG 107
* * * ***** * * * * * ** *** * * **
consensus_9679#0 TTTTTAATATCAATATTGTAGTACGTACACTTTAGACAAACACATATTTTTTTACTCTTC 237
consensus_9679#3 TTTCTAATATCAATATTGTAGTACGTACACTTTAGACAAACACATATAGCATTACTCTTC 167
consensus_9679#1 TTTCTAATATCAATATTGTAGTACGTACACTTTAGACAAACACATATAGCATTACTCTTC 184
consensus_9679#2 TCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACTTCGCCTGACG--ATGTCGCTCCCT 165
* * * * ** * ** * * * ** * * * ***
consensus_9679#0 ATCTAACGGGTACTGTGTTAATTAGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAG 297
consensus_9679#3 ATCTAACGGGTACTGTGTTAATTGGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAG 227
consensus_9679#1 ATCTAACGGGTACTGTGTTAATTGGTTGAGCGGTGGTTGAACACCGTAACAAAGGGGAAG 244
consensus_9679#2 CTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACATGATAGTTAATCATACATTAAT 225
** * * * * * * *** ** * * * ** * **
consensus_9679#0 TCAGGTTCAGGTCTA-ATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCT 356
consensus_9679#3 TCAGGTTCAGGTCTA-ATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCT 286
consensus_9679#1 TCAGGTTCAGGTCTA-ATCATCAGTTCGGAATAATCTTGAAGCGAGGCTTGGAGAAGGCT 303
consensus_9679#2 TCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCTC----CGGAACTTTTTATAATTC 281
** * * * * *** * *** *** ** *** *
consensus_9679#0 GGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTACT 416
consensus_9679#3 GGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTGCT 346
consensus_9679#1 GGAGATGGGTCATAGCGCCCGTAGTCGTTTGTCTTAACCATAAGGTTCCTTGGATGTGCT 363
consensus_9679#2 AAAATTTAATTA----ATCAATGATGAACTCGTTTGAACATTCTTCTTCTTCGTGATTTG 337
* * * * * * * * ** * *** * *** * *
consensus_9679#0 TCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCT----TTTGAT- 471
consensus_9679#3 TCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCT----TTTGAT- 401
consensus_9679#1 TCGCCTGACGATGTCGCTCCCTCTCCGAGTGCAGCACTAGAATATTTCTGAATTATGACA 423
consensus_9679#2 TTTATGGACAGCTAATTACTACTTTCGAATTC--CATCTGTATATACCT----TTTGAT- 390
* *** * * *** * * ** * **** ** * ***
consensus_9679#0 ---TCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAG---TAAAAACTGAAAGCGCCG 525
consensus_9679#3 ---TAGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAG---TAAAAAAAAAAAAAAAAA 455
consensus_9679#1 TGATAGTTAATCATAC-ATTAATTCTTTTGCTATACCACATCTTTTGTTTTAGTGCGTCT 482
consensus_9679#2 ---TCGTTTCTTGCGCTACCAGCTCCCTTCCTCCTGCAG---TAAAAACTGAAAGCGCCG 444
* *** * * * * ** ** ** ** * *
consensus_9679#0 ACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCT 585
consensus_9679#3 AAAAAAAAAAAAAAAGGAAAAAA------------------------------------- 478
consensus_9679#1 CCGGAACTTTTTATAATTCAAAATTTAATTAATCAATGATGAACTCGTTTGAACATTCTT 542
consensus_9679#2 ACGCTACGATGAGCAGTATAACGAAAACCGAAGCTCTATTAACTCTCCTGGAGCTCATCT 504
* * **
consensus_9679#0 TTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGATCAACAGGCTGCCA 645
consensus_9679#3 ------------------------------------------------------------
consensus_9679#1 CTTCTTCGTGATTTGTTTATGGACAGCTAATTACTACTTTCGAATTCCATC--------- 593
consensus_9679#2 TTCTACTTAATTTCTTTCCCTCTCTAGTCCTTCTAGTTCCTGATGATCAACAGGCTGCCA 564
consensus_9679#0 CTCTCATCAACTCTGCCGACAAGGCACTGAA 676
consensus_9679#3 -------------------------------
consensus_9679#1 -------------------------------
consensus_9679#2 CTCTCATCAACTC------------------ 577
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||