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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9691#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1250 fasta sequence
[GCTATTCATCTCTGACCCTGCGGCGCACCAAAACCCCCGTTT-CCGTCTCGCGTTCTTCGATCGCCTCCGCTTAAAAAGCTCGCCGCCTCCGACCGAATCCACTCCCCCCCCATCAATCCCGCAACCCTACCGAAACCGGTAAACCACTGGAAGAAAGCGGGTTCGATCGATCGATCTTGCTAGTGCGGCTATATCTGCTAGTAGGTGAATTGGTCGCTCGACGTTGGTGATCATGGTGGAGAAGACGAAGCTGCAGCTGCCGCTGGTGCACAACGAGCGGCTGTGGGCGCGGCCGTGGCGGTGGGCCAAGACGGTGTTCTTCCTCGTCTCCATGCTCGCCTCGCTGCTGCTCGTCTGCGCGCCGCCGCTGCTCATCGTCGTCCTCGACCTGCTACTCCCGCCCGCGCTCCTCTCCAACTTCCACCGCGCCGCGAACCACCCCACCTCGCTCATCGACCAGGCCAGGGGCTTCCACTTCCGGTCATCGCTCGTCGACCTCCCCGCCGTCTCCGCCGCGCGCTCCCTCC-TCATCCT-CTGCGCGTACACGGCGTGC-GGGGGAGGCGCGGCCTACCTGTGGGTGGCCGTGGCGTGCAGCGTCGGCTCGGTGTGCTACGTCGTCGCCAAGGCGGCCGTGGTGTTCGGCGCGGCGCCCGACAGGGCCGTGCTGGGGCTGCAGGGCAAGGGCCAGCTCGTCGCCGTGGAGGCCATGTTCCTCATGTCGCTCGCGCTCGCCGCCGCGCACATCGCCATGGCCTACCGCGCCAGCTGCCGCGAGCGACGCCGCCTGCTCGTCTACAGAATCGACGTCGAAGCTGTAAGGCTAAAGGGAGGCCAAACGCCCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACACTCGCTGCCTGGCCGTTGCAGTCGGACACA-AACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAATTTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAATGCAAAAATAGGATGAGCCGTTCGGCAGATGCATGCTTGTCATTTTTGGTGGGTTTCCCATTTGTGAGCTGTGAGACGGAGGGGGTGGTTTCGTCGTGTGAATTTCCACAGGTGCGCATCGGTGACGATGCACATGATTGGATCAATTCGAATCATCTGGCTATCAGGTCGAAAAAAAAAA]
[+] EMBL AK069496 [GCTATTCATCTCTGACCCTGCGGCGCACCAAAACCCCCGTTT CCGTCTCGCGTTCTTCGATCGCCTCCGCTTAAAAAGCTCGCCGCCTCCGACCGAATCCACTCCCCCCCCATCAATCCCGCAACCCTACCGAAACCGGTAAACCACTGGAAGAAAGCGGGTTCGATCGATCGATCTTGCTAGTGCGGCTATATCTGCTAGTAGGTGAATTGGTCGCTCGACGTTGGTGATCATGGTGGAGAAGACGAAGCTGCAGCTGCCGCTGGTGCACAACGAGCGGCTGTGGGCGCGGCCGTGGCGGTGGGCCAAGACGGTGTTCTTCCTCGTCTCCATGCTCGCCTCGCTGCTGCTCGTCTGCGCGCCGCCGCTGCTCATCGTCGTCCTCGACCTGCTACTCCCGCCCGCGCTCCTCTCCAACTTCCACCGCGCCGCGAACCACCCCACCTCGCTCATCGACCAGGCCAGGGGCTTCCACTTCCGGTCATCGCTCGTCGACCTCCCCGCCGTCTCCGCCGCGCGCTCCCTCC TCATCCT CTGCGCGTACACGGCGTGC GGGGGAGGCGCGGCCTACCTGTGGGTGGCCGTGGCGTGCAGCGTCGGCTCGGTGTGCTACGTCGTCGCCAAGGCGGCCGTGGTGTTCGGCGCGGCGCCCGACAGGGCCGTGCTGGGGCTGCAGGGCAAGGGCCAGCTCGTCGCCGTGGAGGCCATGTTCCTCATGTCGCTCGCGCTCGCCGCCGCGCACATCGCCATGGCCTACCGCGCCAGCTGCCGCGAGCGACGCCGCCTGCTCGTCTACAGAATCGACGTCGAAGCTGTAAGGCTAAAGGGAGGCCAAACGCCCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACACTCGCTGCCTGGCCGTTGCAGTCGGACACA AACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAATTTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAATGCAAAAATAGGATGAGCCGTTCGGCAGATGCATGCTTGTCATTTTTGGTGGGTTTCCCATTTGTGAGCTGTGAGACGGAGGGGGTGGTTTCGTCGTGTGAATTTCCACAGGTGCGCATCGGTGACGATGCACA ]
[+] EMBL AK061176 [GCTATTCATCTCTGACCCTGCGGCGCACCAAAACCCCCGTTT CCGTCTCGCGTTCTTCGATCGCCTCCGCTTAAAAAGCTCGCCGCCTCCGACCGAATCCACTCCCCCCCCATCAATCCCGCAACCCTACCGAAACCGGTAAACCACTGGAAGAAAGCGGGTTCGATCGATCGATCTTGCTAGTGCGGCTATATCTGCTAGTAGGTGAATTGGTCGCTCGACGTTGGTGATCATGGTGGAGAAGACGAAGCTGCAGCTGCCGCTGGTGCACAACGAGCGGCTGTGGGCGCGGCCGTGGCGGTGGGCCAAGACGGTGTTCTTCCTCGTCTCCATGCTCGCCTCGCTGCTGCTCGTCTGCGCGCCGCCGCTGCTCATCGTCGTCCTCGACCTGCTACTCCCGCCCGCGCTCCTCTCCAACTTCCACCGCGCCGCGAACCACCCCACCTCGCTCATCGACCAGGCCAGGGGCTTCCACTTCCGGTCATCGCTCGTCGACCTCCCCGCCGTCTCCGCCGCGCGCTCCCTCC TCATCCT CTGCGCGTACACGGCGTGC GGGGGAGGCGCGGCCTACCTGTGGGTGGCCGTGGCGTGCAGCGTCGGCTCGGTGTGCTACGTCGTCGCCAAGGCGGCCGTGGTGTTCGGCGCGGCGCCCGACAGGGCCGTGCTGGGGCTGCAGGGCAAGGGCCAGCTCGTCGCCGTGGAGGCCATGTTCCTCATGTCGCTCGCGCTCGCCGCCGCGCACATCGCCATGGCCTACCGCGCCAGCTGCCGCGAGCGACGCCGCCTGCTCGTCTACAGAATCGACGTCGAAGCTGTAAGGCTAAAGGGAGGCCAAACGCCCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACACTCGCTGCCTGGCCGTTGCAGTCGGACACA AACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAATTTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAATGCAAAAATAGGATGA ]
[+] EMBL BE229569 [ cgagCCCGTTTAMCGTCTCGCGTTCTTCGATCGCCTCCGCTTAAAAAGCKCGCCGCCTCCGACCGAAKCCACKCCCCCCCCAKCAATCCCGCAACCCTACCGAAACCGGTAAACCACTGGAAGAAAGCGGGTTCGATCGATCGATCTTGCTAGTGCGGCTATATCTGCTAGTAGGTGAATTGGTCGCTCGACGTTGGTGATCATGGTGGAGAAGACGAAGCTGCAGCTGCCGCTGGTGCACAACGAGCGGCTGTGGGCGCGGCCGTGGCGGTGGGCCAAGACGGTGTTCTTCCTCGTCTCCATGCTCGCCTCGCTGCTGCTCGTCTGCRCGCCGCCGCTGCTCATCGTCGTCCTCGACCTGCTACTCCCGCCCGCGCTCCTCTMCAACTWCCACCGGGCCGGGAACCACCCCACCTCGTTCATCGACCAGGCCAGGGGCTTCCACTTCCGGWCATCGTTCGTCGACCTCCCCGCCGTBTCCGCCGCGCGTTCCCTCCTTAATCCTYTTGCGCGAACACGGCGBGCGGGGGGAGGCG ]
[+] EMBL BI812615 [ GCCA CT CCGCGAGCGACGCCGCCTGCTCGTCTACAGAATCGACGTCGAAGCTGTAAGGCTAAAGGGAGGCCAAACGCCCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACACTCGCTGCCTGGCCGTTGCAGTCGGACACACAACTGAATGCCACGGCATGGCAGGGCCCTGCAATGTTCGTTCCTCCGGTCTCAATTTTTGGTTCGAGTAGATGTGTAC ACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAGTGCAAAAATAGGATGA CCGTTCGGCAGATGCATGCTTGTCATTTTTGGTGGGTTTCCCATTTGTGAGCTGTGAGACGGAGGGGGTGGTTTCGTCGTGTGAATTTCCACAGGTGCGCATCGGTGACGATGCACATGATTGGATCAATTCGAATCATCTGGCTATCAGGTCGAAAAAAAAAA]
consensusID : consensus_9691#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[NNGGGTTAAAATCGTTTNTTNGGAACTCCCNTNCCGGGGTCCTTTTTTTTTGGGAAAANGGGGGGGGGGGGGGNGGCCAANCTTGGGGCCNGGGGGGAAANTTNGTTTGGNNNAAAATTTTTTCCAAAGGGCCCNGGTTTTTGGGGGGGGCCCAAAAAGGCCNTNTGGGGTNNAGGGCAGGGCCATTTTTTTCCCGGGGAGCAAGTTCTTCATGTCGTTGGCGTTCCCCCCGGCGAAAATTGCATGGCCTAACGGCGCAAGTGCGGGGAGGGAACGCGCTTGTTTGTTTACAGGATTGAAGTCGAAGCTGTAAGGTAAAGGGAGGCCAAACGCCCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACAACTCGCTGCCTGGCCGTTGCAGTCGGACACAAACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAATTTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAATGCAAAAATAGGATGAG]
[-] EMBL BE229040 [NNGGGTTAAAATCGTTTNTTNGGAACTCCCNTNCCGGGGTCCTTTTTTTTTGGGAAAANGGGGGGGGGGGGGGNGGCCAANCTTGGGGCCNGGGGGGAAANTTNGTTTGGNNNAAAATTTTTTCCAAAGGGCCCNGGTTTTTGGGGGGGGCCCAAAAAGGCCNTNTGGGGTNNAGGGCAGGGCCATTTTTTTCCCGGGGAGCAAGTTCTTCATGTCGTTGGCGTTCCCCCCGGCGAAAATTGCATGGCCTAACGGCGCAAGTGCGGGGAGGGAACGCGCTTGTTTGTTTACAGGATTGAAGTCGAAGCTGTAAGGTAAAGGGAGGCCAAACGCCCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACAACTCGCTGCCTGGCCGTTGCAGTCGGACACAAACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAATTTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAATGCAAAAATAGGATGAG]
consensusID : consensus_9691#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[CCCATGGCCTACCGCGCCACCTCCCGATGCTGACCCGCCTGCTCGTCTACAGAATCGACGTTCGAACTGTAAGGCTAAAGGGAGCCCACAACGCCCAAGTCCCTGAAGCACAGTTCCCCGTATGACACTCAGCTGCCTGCCCTTGCAGTCGGACACCAACTGAATGCCACGGCATGTCAGGGCCCTGCAATGTTCGTTCCTCCGGTCTCAATTTTTGGTTCGAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGCTAAAGAAGACTGTAAATACGAAACACTCTTGTGCTTCGAGCCTCCTCGCAGTCAGTGCAAAATAGGATGAGCCGTTCAGGCAGATGCACTGCATTGTCATTTTTGGTGGTTTCCCATTTTGAGCTGTGAGCC]
[+] EMBL BI809123 [CCCATGGCCTACCGCGCCACCTCCCGATGCTGACCCGCCTGCTCGTCTACAGAATCGACGTTCGAACTGTAAGGCTAAAGGGAGCCCACAACGCCCAAGTCCCTGAAGCACAGTTCCCCGTATGACACTCAGCTGCCTGCCCTTGCAGTCGGACACCAACTGAATGCCACGGCATGTCAGGGCCCTGCAATGTTCGTTCCTCCGGTCTCAATTTTTGGTTCGAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGTGCTAAAGAAGACTGTAAATACGAAACACTCTTGTGCTTCGAGCCTCCTCGCAGTCAGTGCAAAATAGGATGAGCCGTTCAGGCAGATGCACTGCATTGTCATTTTTGGTGGTTTCCCATTTTGAGCTGTGAGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9691#0 GCTATTCATCTCTGACCCTGCGGCGCACCAAAACCCCCGTTTCCGTCTCGCGTTCTTCGA 60
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 TCGCCTCCGCTTAAAAAGCTCGCCGCCTCCGACCGAATCCACTCCCCCCCCATCAATCCC 120
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 GCAACCCTACCGAAACCGGTAAACCACTGGAAGAAAGCGGGTTCGATCGATCGATCTTGC 180
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 TAGTGCGGCTATATCTGCTAGTAGGTGAATTGGTCGCTCGACGTTGGTGATCATGGTGGA 240
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 GAAGACGAAGCTGCAGCTGCCGCTGGTGCACAACGAGCGGCTGTGGGCGCGGCCGTGGCG 300
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 GTGGGCCAAGACGGTGTTCTTCCTCGTCTCCATGCTCGCCTCGCTGCTGCTCGTCTGCGC 360
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 GCCGCCGCTGCTCATCGTCGTCCTCGACCTGCTACTCCCGCCCGCGCTCCTCTCCAACTT 420
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 CCACCGCGCCGCGAACCACCCCACCTCGCTCATCGACCAGGCCAGGGGCTTCCACTTCCG 480
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 GTCATCGCTCGTCGACCTCCCCGCCGTCTCCGCCGCGCGCTCCCTCCTCATCCTCTGCGC 540
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 --------------NNGGGTTAAAATCGTTTNTTNGGAACTCCCNTNCCGGGGTCCTTTT 46
consensus_9691#0 GTACACGGCGTGCGGGGGAGGCGCGGCCTACCTGTGGGTGGCCGTGGCGTGCAGCGTCGG 600
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 TTTTTGGGAAAANGGGGGGGGGGGGGGNGGCCAANCTTGGGGCCNGGGGGGAAANTTNGT 106
consensus_9691#0 CTCGGTGTGCTACGTCGTCGCCAAGGCGGCCGTGGTGTTCGGCGCGGCGCCCGACAGGGC 660
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 TTGGNN----NAAAATTTTTTCCAAAGGGCCCNGGTTTTTGGGG-GGGGCCCAAAAAGGC 161
consensus_9691#0 CGTGCTGGGGCTGCAGGGCAAGGGCCAGCTCGTCGCCGTGGAGGCCATGTTCCTCATGTC 720
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 CNTNTGGGGTNNA---GGGCAGGGCCATTTTTTTCCCGGGGAG--CAAGTTCTTCATGTC 216
consensus_9691#0 GCTCGCGCTCGCCGCCGCGCACATCGCCATGGCCTACCGCGCCAGCTGCCGCGAGCGACG 780
consensus_9691#2 -------------------------CCCATGGCCTACCGCGCCACCTCCCGATGCTGAC- 34
consensus_9691#1 GTTGGCGTTCCCCCCGGCGAAAATTGC-ATGGCCTAACGGCGCAAGTGCGGGGAGGGAAC 275
* ******** ** ** * * * **
consensus_9691#0 CCGCCTGCTCGTCTACAGAATCGACGTCGAAGCTGTAAGGCTAAAGGGAGGCCA-AACGC 839
consensus_9691#2 CCGCCTGCTCGTCTACAGAATCGACGTTCGAACTGTAAGGCTAAAGGGAGCCCACAACGC 94
consensus_9691#1 GCGCTTGTTTGTTTACAGGATTGAAGTCGAAGCTGTAAGG-TAAAGGGAGGCCA-AACGC 333
*** ** * ** ***** ** ** ** * ******** ********* *** *****
consensus_9691#0 CCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACACTC-GCTGCCTGGCCGTTGCAGTCGG 898
consensus_9691#2 CCAAGTCCCTGAAGCA-CAGTTCCCCGTATGACACTCAGCTGCCTG-CCCTTGCAGTCGG 152
consensus_9691#1 CCAAGTCCCTGAAGCAGCAGTTCGCCGTATGACAACTCGCTGCCTGGCCGTTGCAGTCGG 393
**************** ****** ********** ******** ** **********
consensus_9691#0 ACACAAACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAAT 958
consensus_9691#2 ACACCAACTGAATGCCACGGCATGTCAGGGCCCTGCAATGTTCGTTCCTCCGGTCTCAAT 212
consensus_9691#1 ACACAAACTGAATGCCACGGCATGGCAGGGCCCTGCAGGGTTCGTTCCTCCGGTCTCAAT 453
**** ******************* ************ *********************
consensus_9691#0 TTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGT 1018
consensus_9691#2 TTTTGGTTCGAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGT 272
consensus_9691#1 TTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTGAAAAATAGT 513
********* **************************************************
consensus_9691#0 G-TAAAGAAGA-TGTAAATACGAAACATT--TGTGCTTCG-GCCTCCT-GCAGTCAATGC 1072
consensus_9691#2 GCTAAAGAAGACTGTAAATACGAAACACTCTTGTGCTTCGAGCCTCCTCGCAGTCAGTGC 332
consensus_9691#1 G-TAAAGAAGA-TGTAAATACGAAACATT--TGTGCTTCG-GCCTCCT-GCAGTCAATGC 567
* ********* *************** * ********* ******* ******* ***
consensus_9691#0 AAAAATAGGATGAGCCGTTC-GGCAGATGCA-TGC-TTGTCATTTTTGGTGGGTTTCCCA 1129
consensus_9691#2 AAAA-TAGGATGAGCCGTTCAGGCAGATGCACTGCATTGTCATTTTTGGTGG-TTTCCCA 390
consensus_9691#1 AAAAATAGGATGAG---------------------------------------------- 581
**** *********
consensus_9691#0 TTTGTGAGCTGTGAGACGGAGGGGGTGGTTTCGTCGTGTGAATTTCCACAGGTGCGCATC 1189
consensus_9691#2 TTT-TGAGCTGTGAGCC------------------------------------------- 406
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 GGTGACGATGCACATGATTGGATCAATTCGAATCATCTGGCTATCAGGTCGAAAAAAAAA 1249
consensus_9691#2 ------------------------------------------------------------
consensus_9691#1 ------------------------------------------------------------
consensus_9691#0 A 1250
consensus_9691#2 -
consensus_9691#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||