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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1533 fasta sequence
[TTCCAGCGAGTTTTTGGGTTCTTTGTGTGATTTGGATGGAAGGTGGGCTTCAGGACTGGTGGTGATAACTGGCTGTTGGTAAGGAAACATGGCAGAGACCAGAGGCGTGGGTGGGCGCCTTGCGGCATTGGCTTCTAAGGTGGACTCGAAGATATATTATCTCAAGGATGTGTTGGTTGAGTACATGGACATGAAAAATGTGGTTGCTGAAATAGCAGAGGAGAGGGAGAGGTTCCAGCTTGAACAGCGTGGAAATGACGCACTTCTGGAAGCAATGAAGGAGGAGCTTGTGGCAGCAAACAACGAGCTCGAAGCAGCAAAAGAGGAAATCTCTCGAAAGAACAATGAGCTAGAGTCTGTAAAGAAACAGCTTCAAGAGAGTGAAGCGAGAAATATTCAGGCTGAGCAGCAGAGCGGCATTGTGGTTGAGCTTATGCAACCAAGAGGGGTGCAAACAAGATCGATGCAAAAACGCAAAAGGCCATTGCAAGGACCTTCGGGCTGTGAGGCTGATGACCAAGAGTATACGAGTCAAATCAATGTCCAATCTCCACGTTGCTTGGAATCGATGAGAACTCCTGATGTCAAGAAAAGATCGGTGCAGAAACAAAAACATTTATCTCAAGGACTTCCAGGTGATCCTGGTGAGCTTCAGTTAATGGAAGGGCATCTGAGTGACCCGAATGCTGGGGAAGCCTCAGGTGCTCTGGTGAGCAAAGATGATGACCTGGAGGCAGTTAGAGAAGAGTTGATCAAGGGATTCCTTGACATTGATAACGGTGGACGGAAACTTGGGATAAAGGAAATGGGACAGTTGAATGAGAAGGTGTTCCAGATTGCATGTCTTGCTAAGCTACCTCCAGAAGAAGTTGGCGAGGCATCGTATGAACTATACTCATCGTGGCAGAAGCAACTCAGTGACCTAAGCTGGAATCCCTTCAAGACAATCACAGTTGATGGTAACGGTAAGGAGATTGTGAATGTTGATGATGAAAAGCTGCAAGAGCTTAAGAGGGACTATGGAGAAGGTGCTCACAAGGCTGTCATGAATGCACTAATGGAGATGAAAGAGTATAATGTCCTAGCTGACAGAAGCATCGCGTATGAGCTGTGGAACTACAAGGATGGGAGGAAGGCCACCCTGCGTGAGTGTGTTGAGTACGTTTGCAATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGTGGTGAGGGCTGAGTTTTGGGGGCAGTGTAGGACTAATCCATGAAGTTCCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTATGAACTACTACTACTACTACTACTAGTACATCTATTTTGTGTTTTGTAAAACCAAGTTGTGGCTTATGACCACTGTACTGCTTGTGCACCCAGCTCATTACATGCTATAGTATGTATTTACATGAGACCAAAAGAAAAAAAAAAAAAAAAAAGGACAC]
[+] EMBL AK064511 [TTCCAGCGAGTTTTTGGGTTCTTTGTGTGATTTGGATGGAAGGTGGGCTTCAGGACTGGTGGTGATAACTGGCTGTTGGTAAGGAAACATGGCAGAGACCAGAGGCGTGGGTGGGCGCCTTGCGGCATTGGCTTCTAAGGTGGACTCGAAGATATATTATCTCAAGGATGTGTTGGTTGAGTACATGGACATGAAAAATGTGGTTGCTGAAATAGCAGAGGAGAGGGAGAGGTTCCAGCTTGAACAGCGTGGAAATGACGCACTTCTGGAAGCAATGAAGGAGGAGCTTGTGGCAGCAAACAACGAGCTCGAAGCAGCAAAAGAGGAAATCTCTCGAAAGAACAATGAGCTAGAGTCTGTAAAGAAACAGCTTCAAGAGAGTGAAGCGAGAAATATTCAGGCTGAGCAGCAGAGCGGCATTGTGGTTGAGCTTATGCAACCAAGAGGGGTGCAAACAAGATCGATGCAAAAACGCAAAAGGCCATTGCAAGGACCTTCGGGCTGTGAGGCTGATGACCAAGAGTATACGAGTCAAATCAATGTCCAATCTCCACGTTGCTTGGAATCGATGAGAACTCCTGATGTCAAGAAAAGATCGGTGCAGAAACAAAAACATTTATCTCAAGGACTTCCAGGTGATCCTGGTGAGCTTCAGTTAATGGAAGGGCATCTGAGTGACCCGAATGCTGGGGAAGCCTCAGGTGCTCTGGTGAGCAAAGATGATGACCTGGAGGCAGTTAGAGAAGAGTTGATCAAGGGATTCCTTGACATTGATAACGGTGGACGGAAACTTGGGATAAAGGAAATGGGACAGTTGAATGAGAAGGTGTTCCAGATTGCATGTCTTGCTAAGCTACCTCCAGAAGAAGTTGGCGAGGCATCGTATGAACTATACTCATCGTGGCAGAAGCAACTCAGTGACCTAAGCTGGAATCCCTTCAAGACAATCACAGTTGATGGTAACGGTAAGGAGATTGTGAATGTTGATGATGAAAAGCTGCAAGAGCTTAAGAGGGACTATGGAGAAGGTGCTCACAAGGCTGTCATGAATGCACTAATGGAGATGAAAGAATATAATGTCCTAGCTGACAGAAGCATCGCGTATGAGCTGTGGAACTACAAGGATGGGAGGAAGGCCACCCTGCGTGAGTGTGTTGAGTACGTTTGCAATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGTGGTGAGGGCTGAGTTTTGGGGGCAGTGTAGGACTAATCCATGAAGTTCCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTATGAACTACTACTACTACTACTACTAGTACATCTATTTTGTGTTTTGTAAAACCAAGTTGTGGCTTATGACCACTGTACTGCTTGTGCACCCAGCTCATTACATGCTATAGTATGTATTTACATGAGACCTATAG ]
[+] EMBL BP184852 [ acgaggCGAAGATATATTATCTCAAGGATGTGTTGGTTGAGTACATGGACATGAAAAATGTGGTTGCTGAAATAGCAGAGGAGAGGGAGAGGTTCCAGCTTGAACAGCGTGGAAATGACGCACTTCTGGAAGCAATGAAGGAGGAGCTTGTGGCAGCAAACAACGAGCTCGAAGCAGCAAAAGAGGAAATCTCTCGAAAGAACAATGAGCTAGAGTCTGTAAAGAAACAGCTTCAAGAGAGTGAAGCGAGAAATATTCAGGCTGAGCAGCAGAGCGGCATTGTGGTTGAGCTTATGCAACCAAGAGGGGTGCAAACAAGATCGATGCAAAAACGCAAAAGGCCATTGCAAGGACCTTCGGGCTGTGAGGCTGATGACCAAGAGTATACGAGTCAAATCAATGTCCAATCTCCACGTTGCTTGGAATCGATGAGAACTCCTGATGTCAAGAAAAGATCGGTGCAGAAACAAAAACATTTATCTCAAGGACTTCCAGGTGATCCTGGTGAGCTTCAGTTAATGGAAGGGCATCTGAGTGACCCGAATGCTGGGGAAGCCTCAGGTGCTCTGGTGAGCAAAGATGATGACCTGGAGGCAGTTAGAGAAGAGTTGATCAAGGGATTCCTTGACATTGATAACGGTGGACGGAAACTTGGGATAAAGGAAATGGGACAGTTGAATGAGAAGGTGTTCCAGATTGCATGTCTTGCTAAGCTACCTCCAGAAGAAGTTGGCGAGGCATCGTATGAACTATACTCATCGTGGCAGAAGCAACTCAGTGACCTAAGCTGGAATCCCTTCAAGACAATCACAGTTGATGGTAACGGTAAGGAGATTGTGAATGTTGATGATGAAAAGCTGCAAGAGCTTAAGAGGGACTATGGAGAAGGTGCTCACAAGGCTGTCATGAATGCACTAATGGAGATGAAAGAGTATAATGTCCTAGCTGACAGAAGCATCGCGTATGAGCTGTGGAACTACAAGGATGGGAGGAAGGCCACCCTGCGTGAGTGTGTTGAGTACGTTTGCAATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGTGGTGAGGGCTGAGTTTTGGGGGCAGTGTAGGACTAATCCATGAAGTTCCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTATGAACTACTACTACTACTACTACTAGTACATCTATTTTGTGTTTTGTAAAACCAAGTTGTGGCTTATGACCACTGTACTGCTTGTGCACCCAGCTCATTACATGCTATAGTATGTATTTACATGAAAAAAAA ]
[+] EMBL BF475202 [ TGAAAAATGTGGTTGCTGAAATAGCAGAGGAGAGGGAGAGGTTCCAGCTTGAACAGCGTGGAAATGACGCACTTCTGGAAGCAATGAAGGAGGAGCTTGTGGCAGCAAACAATGAGCTCGAAGCAGCAAAAGAGGAAATCTCTCGAAAGAACAATGAGCTAGAGTCTGTAAAGAAACAGCTTCAAGAGAGTGAAGCGAGAAATATTCAGGCTGAGCAGCAGAGCGGCATTGTGGTTGACCTTATGCAACCAAGAGGGGTGCAAACAAGATCGATGCAAAAACGCAAAAGGCCATTGCAAGGACCTTTGGGCTGTGAGGCTGATGACCAAGAGTATACGAGTCAAATCAATGTCCAATCTCCACGTTGCTTGGAAACAATGAGAACTCCTG ]
[-] EMBL CF320752 [ AAGGCTGTCATGAATGCACTAATGGAGATGAAAGAGTATAATGTCCTAGCTGACAGAAGCATCGCGTATGAGCTGTGGAACTACAAGGATGGGAGGAAGGCCACCCTGCGTGAGTGTGTTGAGTACGTTTGCAATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGTGGTGAGGGCTGAGTTTTGGGGCCAGTGTAGGACTAATCCATGAAGTTCCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGAATGAAAAACTATGAACTACTACTACTACTACTACTAGTACATCTATTTTGTGTTTTGTAAAACCAAGTTGTGGCTTATGACCACTGTACTGCTTGTGCACCCAGCTCATTACATGCTATAGTATGTATTTACATGAGCCCAAAAAAAAAAAAAAAAAAAAAAAGGACAC]
consensusID : consensus_9698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence
[ATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGGGAAGTTGACCTGCTGGTGGCACCACAACAACACAAGGGTGGTGAGGGCTGAGTTTTGGGGGCAGTGTAGGACTAATCCATGAAGGACCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTATGAACTACTACTAC]
[+] EMBL BF475200 [ATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGGGAAGTTGACCTGCTGGTGGCACCACAACAACACAAGGGTGGTGAGGGCTGAGTTTTGGGGGCAGTGTAGGACTAATCCATGAAGGACCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTATGAACTACTACTAC]
consensusID : consensus_9698#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 130 fasta sequence
[TTACAGTTTCACTCCATCAGAGCACTAGGAGTCGGTGTGGGCTTCAGGACTGGTGGTGATAACTGGCTGTTGGTAAGGAAACATTGCAGAGACCAGAGGCGTGGGTGGGCGCCTTGCGGCATTGGCTTCT]
[+] EMBL CF320751 [TTACAGTTTCACTCCATCAGAGCACTAGGAGTCGGTGTGGGCTTCAGGACTGGTGGTGATAACTGGCTGTTGGTAAGGAAACATTGCAGAGACCAGAGGCGTGGGTGGGCGCCTTGCGGCATTGGCTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9698#0 TTCCAGCGAGTTTTTGGGTTCTTTGTGTGATTTGGATGGAAGGTGGGCTTCAGGACTGGT 60
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 GGTGATAACTGGCTGTTGGTAAGGAAACATGGCAGAGACCAGAGGCGTGGGTGGGCGCCT 120
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 TGCGGCATTGGCTTCTAAGGTGGACTCGAAGATATATTATCTCAAGGATGTGTTGGTTGA 180
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 GTACATGGACATGAAAAATGTGGTTGCTGAAATAGCAGAGGAGAGGGAGAGGTTCCAGCT 240
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 TGAACAGCGTGGAAATGACGCACTTCTGGAAGCAATGAAGGAGGAGCTTGTGGCAGCAAA 300
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 CAACGAGCTCGAAGCAGCAAAAGAGGAAATCTCTCGAAAGAACAATGAGCTAGAGTCTGT 360
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 AAAGAAACAGCTTCAAGAGAGTGAAGCGAGAAATATTCAGGCTGAGCAGCAGAGCGGCAT 420
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 TGTGGTTGAGCTTATGCAACCAAGAGGGGTGCAAACAAGATCGATGCAAAAACGCAAAAG 480
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 GCCATTGCAAGGACCTTCGGGCTGTGAGGCTGATGACCAAGAGTATACGAGTCAAATCAA 540
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 TGTCCAATCTCCACGTTGCTTGGAATCGATGAGAACTCCTGATGTCAAGAAAAGATCGGT 600
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 GCAGAAACAAAAACATTTATCTCAAGGACTTCCAGGTGATCCTGGTGAGCTTCAGTTAAT 660
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 GGAAGGGCATCTGAGTGACCCGAATGCTGGGGAAGCCTCAGGTGCTCTGGTGAGCAAAGA 720
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 TGATGACCTGGAGGCAGTTAGAGAAGAGTTGATCAAGGGATTCCTTGACATTGATAACGG 780
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 TGGACGGAAACTTGGGATAAAGGAAATGGGACAGTTGAATGAGAAGGTGTTCCAGATTGC 840
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 ATGTCTTGCTAAGCTACCTCCAGAAGAAGTTGGCGAGGCATCGTATGAACTATACTCATC 900
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 GTGGCAGAAGCAACTCAGTGACCTAAGCTGGAATCCCTTCAAGACAATCACAGTTGATGG 960
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 TAACGGTAAGGAGATTGTGAATGTTGATGATGAAAAGCTGCAAGAGCTTAAGAGGGACTA 1020
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 TGGAGAAGGTGCTCACAAGGCTGTCATGAATGCACTAATGGAGATGAAAGAGTATAATGT 1080
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 CCTAGCTGACAGAAGCATCGCGTATGAGCTGTGGAACTACAAGGATGGGAGGAAGGCCAC 1140
consensus_9698#1 -----------------------------------------ATCAAGTGAAGCAACTCAC 19
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 CCTGCGTGAGTGTGTTGAGTACGTTTGCAATCAAGTGAAGCAACTCAC-AGTGACCAAGC 1199
consensus_9698#1 AGTGACCAAGCGCAGGAAGT---CTCGCAG---GGGAAGTTGACCTGCTGGTGGC--ACC 71
consensus_9698#2 --------------------------------------------TTAC-AGTTTC--ACT 13
* ** * *
consensus_9698#0 GCAGGAAGTCTCGCAGG--TGGTGAGGGCTG-AGTTTTGGGGGCAGTGTAGGACTAATCC 1256
consensus_9698#1 ACAACAA--CACAAGGG--TGGTGAGGGCTG-AGTTTTGGGGGCAGTGTAGGACTAATCC 126
consensus_9698#2 CCATCAGAGCACTAGGAGTCGGTGTGGGCTTCAGGACTGGTGGTGATAACTGGCTG-TTG 72
** * * * * **** ***** ** *** ** * * ** *
consensus_9698#0 ATGAAGTTCCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCA 1316
consensus_9698#1 ATGAAGGACCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCA 186
consensus_9698#2 GTAAGGAAACATTGCAGAGACCAGAG-----GCGTGGGTGGGCGCCTTGCGGCATTGGCT 127
* * * * *** * ** ** ** * * *** * ** *
consensus_9698#0 TGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTAT 1376
consensus_9698#1 TGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTAT 246
consensus_9698#2 TCT--------------------------------------------------------- 130
*
consensus_9698#0 GAACTACTACTACTACTACTACTAGTACATCTATTTTGTGTTTTGTAAAACCAAGTTGTG 1436
consensus_9698#1 GAACTACTACTAC----------------------------------------------- 259
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 GCTTATGACCACTGTACTGCTTGTGCACCCAGCTCATTACATGCTATAGTATGTATTTAC 1496
consensus_9698#1 ------------------------------------------------------------
consensus_9698#2 ------------------------------------------------------------
consensus_9698#0 ATGAGACCAAAAGAAAAAAAAAAAAAAAAAAGGACAC 1533
consensus_9698#1 -------------------------------------
consensus_9698#2 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||