These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1533 fasta sequence [TTCCAGCGAGTTTTTGGGTTCTTTGTGTGATTTGGATGGAAGGTGGGCTTCAGGACTGGTGGTGATAACTGGCTGTTGGTAAGGAAACATGGCAGAGACCAGAGGCGTGGGTGGGCGCCTTGCGGCATTGGCTTCTAAGGTGGACTCGAAGATATATTATCTCAAGGATGTGTTGGTTGAGTACATGGACATGAAAAATGTGGTTGCTGAAATAGCAGAGGAGAGGGAGAGGTTCCAGCTTGAACAGCGTGGAAATGACGCACTTCTGGAAGCAATGAAGGAGGAGCTTGTGGCAGCAAACAACGAGCTCGAAGCAGCAAAAGAGGAAATCTCTCGAAAGAACAATGAGCTAGAGTCTGTAAAGAAACAGCTTCAAGAGAGTGAAGCGAGAAATATTCAGGCTGAGCAGCAGAGCGGCATTGTGGTTGAGCTTATGCAACCAAGAGGGGTGCAAACAAGATCGATGCAAAAACGCAAAAGGCCATTGCAAGGACCTTCGGGCTGTGAGGCTGATGACCAAGAGTATACGAGTCAAATCAATGTCCAATCTCCACGTTGCTTGGAATCGATGAGAACTCCTGATGTCAAGAAAAGATCGGTGCAGAAACAAAAACATTTATCTCAAGGACTTCCAGGTGATCCTGGTGAGCTTCAGTTAATGGAAGGGCATCTGAGTGACCCGAATGCTGGGGAAGCCTCAGGTGCTCTGGTGAGCAAAGATGATGACCTGGAGGCAGTTAGAGAAGAGTTGATCAAGGGATTCCTTGACATTGATAACGGTGGACGGAAACTTGGGATAAAGGAAATGGGACAGTTGAATGAGAAGGTGTTCCAGATTGCATGTCTTGCTAAGCTACCTCCAGAAGAAGTTGGCGAGGCATCGTATGAACTATACTCATCGTGGCAGAAGCAACTCAGTGACCTAAGCTGGAATCCCTTCAAGACAATCACAGTTGATGGTAACGGTAAGGAGATTGTGAATGTTGATGATGAAAAGCTGCAAGAGCTTAAGAGGGACTATGGAGAAGGTGCTCACAAGGCTGTCATGAATGCACTAATGGAGATGAAAGAGTATAATGTCCTAGCTGACAGAAGCATCGCGTATGAGCTGTGGAACTACAAGGATGGGAGGAAGGCCACCCTGCGTGAGTGTGTTGAGTACGTTTGCAATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGTGGTGAGGGCTGAGTTTTGGGGGCAGTGTAGGACTAATCCATGAAGTTCCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTATGAACTACTACTACTACTACTACTAGTACATCTATTTTGTGTTTTGTAAAACCAAGTTGTGGCTTATGACCACTGTACTGCTTGTGCACCCAGCTCATTACATGCTATAGTATGTATTTACATGAGACCAAAAGAAAAAAAAAAAAAAAAAAGGACAC] [+] EMBL AK064511 [TTCCAGCGAGTTTTTGGGTTCTTTGTGTGATTTGGATGGAAGGTGGGCTTCAGGACTGGTGGTGATAACTGGCTGTTGGTAAGGAAACATGGCAGAGACCAGAGGCGTGGGTGGGCGCCTTGCGGCATTGGCTTCTAAGGTGGACTCGAAGATATATTATCTCAAGGATGTGTTGGTTGAGTACATGGACATGAAAAATGTGGTTGCTGAAATAGCAGAGGAGAGGGAGAGGTTCCAGCTTGAACAGCGTGGAAATGACGCACTTCTGGAAGCAATGAAGGAGGAGCTTGTGGCAGCAAACAACGAGCTCGAAGCAGCAAAAGAGGAAATCTCTCGAAAGAACAATGAGCTAGAGTCTGTAAAGAAACAGCTTCAAGAGAGTGAAGCGAGAAATATTCAGGCTGAGCAGCAGAGCGGCATTGTGGTTGAGCTTATGCAACCAAGAGGGGTGCAAACAAGATCGATGCAAAAACGCAAAAGGCCATTGCAAGGACCTTCGGGCTGTGAGGCTGATGACCAAGAGTATACGAGTCAAATCAATGTCCAATCTCCACGTTGCTTGGAATCGATGAGAACTCCTGATGTCAAGAAAAGATCGGTGCAGAAACAAAAACATTTATCTCAAGGACTTCCAGGTGATCCTGGTGAGCTTCAGTTAATGGAAGGGCATCTGAGTGACCCGAATGCTGGGGAAGCCTCAGGTGCTCTGGTGAGCAAAGATGATGACCTGGAGGCAGTTAGAGAAGAGTTGATCAAGGGATTCCTTGACATTGATAACGGTGGACGGAAACTTGGGATAAAGGAAATGGGACAGTTGAATGAGAAGGTGTTCCAGATTGCATGTCTTGCTAAGCTACCTCCAGAAGAAGTTGGCGAGGCATCGTATGAACTATACTCATCGTGGCAGAAGCAACTCAGTGACCTAAGCTGGAATCCCTTCAAGACAATCACAGTTGATGGTAACGGTAAGGAGATTGTGAATGTTGATGATGAAAAGCTGCAAGAGCTTAAGAGGGACTATGGAGAAGGTGCTCACAAGGCTGTCATGAATGCACTAATGGAGATGAAAGAATATAATGTCCTAGCTGACAGAAGCATCGCGTATGAGCTGTGGAACTACAAGGATGGGAGGAAGGCCACCCTGCGTGAGTGTGTTGAGTACGTTTGCAATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGTGGTGAGGGCTGAGTTTTGGGGGCAGTGTAGGACTAATCCATGAAGTTCCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTATGAACTACTACTACTACTACTACTAGTACATCTATTTTGTGTTTTGTAAAACCAAGTTGTGGCTTATGACCACTGTACTGCTTGTGCACCCAGCTCATTACATGCTATAGTATGTATTTACATGAGACCTATAG ] [+] EMBL BP184852 [ acgaggCGAAGATATATTATCTCAAGGATGTGTTGGTTGAGTACATGGACATGAAAAATGTGGTTGCTGAAATAGCAGAGGAGAGGGAGAGGTTCCAGCTTGAACAGCGTGGAAATGACGCACTTCTGGAAGCAATGAAGGAGGAGCTTGTGGCAGCAAACAACGAGCTCGAAGCAGCAAAAGAGGAAATCTCTCGAAAGAACAATGAGCTAGAGTCTGTAAAGAAACAGCTTCAAGAGAGTGAAGCGAGAAATATTCAGGCTGAGCAGCAGAGCGGCATTGTGGTTGAGCTTATGCAACCAAGAGGGGTGCAAACAAGATCGATGCAAAAACGCAAAAGGCCATTGCAAGGACCTTCGGGCTGTGAGGCTGATGACCAAGAGTATACGAGTCAAATCAATGTCCAATCTCCACGTTGCTTGGAATCGATGAGAACTCCTGATGTCAAGAAAAGATCGGTGCAGAAACAAAAACATTTATCTCAAGGACTTCCAGGTGATCCTGGTGAGCTTCAGTTAATGGAAGGGCATCTGAGTGACCCGAATGCTGGGGAAGCCTCAGGTGCTCTGGTGAGCAAAGATGATGACCTGGAGGCAGTTAGAGAAGAGTTGATCAAGGGATTCCTTGACATTGATAACGGTGGACGGAAACTTGGGATAAAGGAAATGGGACAGTTGAATGAGAAGGTGTTCCAGATTGCATGTCTTGCTAAGCTACCTCCAGAAGAAGTTGGCGAGGCATCGTATGAACTATACTCATCGTGGCAGAAGCAACTCAGTGACCTAAGCTGGAATCCCTTCAAGACAATCACAGTTGATGGTAACGGTAAGGAGATTGTGAATGTTGATGATGAAAAGCTGCAAGAGCTTAAGAGGGACTATGGAGAAGGTGCTCACAAGGCTGTCATGAATGCACTAATGGAGATGAAAGAGTATAATGTCCTAGCTGACAGAAGCATCGCGTATGAGCTGTGGAACTACAAGGATGGGAGGAAGGCCACCCTGCGTGAGTGTGTTGAGTACGTTTGCAATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGTGGTGAGGGCTGAGTTTTGGGGGCAGTGTAGGACTAATCCATGAAGTTCCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTATGAACTACTACTACTACTACTACTAGTACATCTATTTTGTGTTTTGTAAAACCAAGTTGTGGCTTATGACCACTGTACTGCTTGTGCACCCAGCTCATTACATGCTATAGTATGTATTTACATGAAAAAAAA ] [+] EMBL BF475202 [ TGAAAAATGTGGTTGCTGAAATAGCAGAGGAGAGGGAGAGGTTCCAGCTTGAACAGCGTGGAAATGACGCACTTCTGGAAGCAATGAAGGAGGAGCTTGTGGCAGCAAACAATGAGCTCGAAGCAGCAAAAGAGGAAATCTCTCGAAAGAACAATGAGCTAGAGTCTGTAAAGAAACAGCTTCAAGAGAGTGAAGCGAGAAATATTCAGGCTGAGCAGCAGAGCGGCATTGTGGTTGACCTTATGCAACCAAGAGGGGTGCAAACAAGATCGATGCAAAAACGCAAAAGGCCATTGCAAGGACCTTTGGGCTGTGAGGCTGATGACCAAGAGTATACGAGTCAAATCAATGTCCAATCTCCACGTTGCTTGGAAACAATGAGAACTCCTG ] [-] EMBL CF320752 [ AAGGCTGTCATGAATGCACTAATGGAGATGAAAGAGTATAATGTCCTAGCTGACAGAAGCATCGCGTATGAGCTGTGGAACTACAAGGATGGGAGGAAGGCCACCCTGCGTGAGTGTGTTGAGTACGTTTGCAATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGTGGTGAGGGCTGAGTTTTGGGGCCAGTGTAGGACTAATCCATGAAGTTCCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGAATGAAAAACTATGAACTACTACTACTACTACTACTAGTACATCTATTTTGTGTTTTGTAAAACCAAGTTGTGGCTTATGACCACTGTACTGCTTGTGCACCCAGCTCATTACATGCTATAGTATGTATTTACATGAGCCCAAAAAAAAAAAAAAAAAAAAAAAGGACAC] consensusID : consensus_9698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [ATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGGGAAGTTGACCTGCTGGTGGCACCACAACAACACAAGGGTGGTGAGGGCTGAGTTTTGGGGGCAGTGTAGGACTAATCCATGAAGGACCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTATGAACTACTACTAC] [+] EMBL BF475200 [ATCAAGTGAAGCAACTCACAGTGACCAAGCGCAGGAAGTCTCGCAGGGGAAGTTGACCTGCTGGTGGCACCACAACAACACAAGGGTGGTGAGGGCTGAGTTTTGGGGGCAGTGTAGGACTAATCCATGAAGGACCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCATGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTATGAACTACTACTAC] consensusID : consensus_9698#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 130 fasta sequence [TTACAGTTTCACTCCATCAGAGCACTAGGAGTCGGTGTGGGCTTCAGGACTGGTGGTGATAACTGGCTGTTGGTAAGGAAACATTGCAGAGACCAGAGGCGTGGGTGGGCGCCTTGCGGCATTGGCTTCT] [+] EMBL CF320751 [TTACAGTTTCACTCCATCAGAGCACTAGGAGTCGGTGTGGGCTTCAGGACTGGTGGTGATAACTGGCTGTTGGTAAGGAAACATTGCAGAGACCAGAGGCGTGGGTGGGCGCCTTGCGGCATTGGCTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9698#0 TTCCAGCGAGTTTTTGGGTTCTTTGTGTGATTTGGATGGAAGGTGGGCTTCAGGACTGGT 60 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 GGTGATAACTGGCTGTTGGTAAGGAAACATGGCAGAGACCAGAGGCGTGGGTGGGCGCCT 120 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 TGCGGCATTGGCTTCTAAGGTGGACTCGAAGATATATTATCTCAAGGATGTGTTGGTTGA 180 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 GTACATGGACATGAAAAATGTGGTTGCTGAAATAGCAGAGGAGAGGGAGAGGTTCCAGCT 240 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 TGAACAGCGTGGAAATGACGCACTTCTGGAAGCAATGAAGGAGGAGCTTGTGGCAGCAAA 300 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 CAACGAGCTCGAAGCAGCAAAAGAGGAAATCTCTCGAAAGAACAATGAGCTAGAGTCTGT 360 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 AAAGAAACAGCTTCAAGAGAGTGAAGCGAGAAATATTCAGGCTGAGCAGCAGAGCGGCAT 420 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 TGTGGTTGAGCTTATGCAACCAAGAGGGGTGCAAACAAGATCGATGCAAAAACGCAAAAG 480 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 GCCATTGCAAGGACCTTCGGGCTGTGAGGCTGATGACCAAGAGTATACGAGTCAAATCAA 540 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 TGTCCAATCTCCACGTTGCTTGGAATCGATGAGAACTCCTGATGTCAAGAAAAGATCGGT 600 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 GCAGAAACAAAAACATTTATCTCAAGGACTTCCAGGTGATCCTGGTGAGCTTCAGTTAAT 660 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 GGAAGGGCATCTGAGTGACCCGAATGCTGGGGAAGCCTCAGGTGCTCTGGTGAGCAAAGA 720 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 TGATGACCTGGAGGCAGTTAGAGAAGAGTTGATCAAGGGATTCCTTGACATTGATAACGG 780 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 TGGACGGAAACTTGGGATAAAGGAAATGGGACAGTTGAATGAGAAGGTGTTCCAGATTGC 840 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 ATGTCTTGCTAAGCTACCTCCAGAAGAAGTTGGCGAGGCATCGTATGAACTATACTCATC 900 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 GTGGCAGAAGCAACTCAGTGACCTAAGCTGGAATCCCTTCAAGACAATCACAGTTGATGG 960 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 TAACGGTAAGGAGATTGTGAATGTTGATGATGAAAAGCTGCAAGAGCTTAAGAGGGACTA 1020 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 TGGAGAAGGTGCTCACAAGGCTGTCATGAATGCACTAATGGAGATGAAAGAGTATAATGT 1080 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 CCTAGCTGACAGAAGCATCGCGTATGAGCTGTGGAACTACAAGGATGGGAGGAAGGCCAC 1140 consensus_9698#1 -----------------------------------------ATCAAGTGAAGCAACTCAC 19 consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 CCTGCGTGAGTGTGTTGAGTACGTTTGCAATCAAGTGAAGCAACTCAC-AGTGACCAAGC 1199 consensus_9698#1 AGTGACCAAGCGCAGGAAGT---CTCGCAG---GGGAAGTTGACCTGCTGGTGGC--ACC 71 consensus_9698#2 --------------------------------------------TTAC-AGTTTC--ACT 13 * ** * * consensus_9698#0 GCAGGAAGTCTCGCAGG--TGGTGAGGGCTG-AGTTTTGGGGGCAGTGTAGGACTAATCC 1256 consensus_9698#1 ACAACAA--CACAAGGG--TGGTGAGGGCTG-AGTTTTGGGGGCAGTGTAGGACTAATCC 126 consensus_9698#2 CCATCAGAGCACTAGGAGTCGGTGTGGGCTTCAGGACTGGTGGTGATAACTGGCTG-TTG 72 ** * * * * **** ***** ** *** ** * * ** * consensus_9698#0 ATGAAGTTCCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCA 1316 consensus_9698#1 ATGAAGGACCTGAGCAAGAATGGAAGTCTTAGCTTGCTTATGTCTTTTGTAAAAATGTCA 186 consensus_9698#2 GTAAGGAAACATTGCAGAGACCAGAG-----GCGTGGGTGGGCGCCTTGCGGCATTGGCT 127 * * * * *** * ** ** ** * * *** * ** * consensus_9698#0 TGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTAT 1376 consensus_9698#1 TGACTAGGAAGTAGGAATCCTGAAGAACCTGATCGTATGAAGCAACGGATGGAAAACTAT 246 consensus_9698#2 TCT--------------------------------------------------------- 130 * consensus_9698#0 GAACTACTACTACTACTACTACTAGTACATCTATTTTGTGTTTTGTAAAACCAAGTTGTG 1436 consensus_9698#1 GAACTACTACTAC----------------------------------------------- 259 consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 GCTTATGACCACTGTACTGCTTGTGCACCCAGCTCATTACATGCTATAGTATGTATTTAC 1496 consensus_9698#1 ------------------------------------------------------------ consensus_9698#2 ------------------------------------------------------------ consensus_9698#0 ATGAGACCAAAAGAAAAAAAAAAAAAAAAAAGGACAC 1533 consensus_9698#1 ------------------------------------- consensus_9698#2 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||