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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1608 fasta sequence
[CGATCGCTCGCTCGCTCGCACTTCAGTTCTGGCGGCGCGCGCGGTGGCAGGGCCGGCCATGACGAAGTCGGCCACCTCGCTCCTGCTCGGCGCGGCCCTCGCCACGGTCTTCTTCCTGCTCTACACCTCCGTCTGCCGCGACCTCGGCGACGGGCCTCCAAAATCCTCGCCGCCGCGCTGGGCGCATGCGCAGGAGCAGGGGACCGCCACCGTCACGCCGGCCACGAGGGTCGTCGACGCCGAGCAGGGGACCGGCCGCCCGGGGAGGCAAGAAGAGGAAGTGGTTGCTCCAAGAGAGGAGAAGCAGACCAAGGACGAAGCGGCTTCGCGCAGCGGCCATGGCGGCGGCTCGGTAGAGCAGCAGCAAAACCAGCGAAGGATCGTGATGCCCACAAGCCAACAGAAGGAGACGCCATCGTCGCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGACAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGACCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCTGGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTACTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTACCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAGCTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCCCGGATGCACAGGT-GGTGATGTCCTCCGACTTCTTCGTCGGCGACCCAACCTCACCAGGGAACTACCCCAACGGCGGCCTCCTGTACGTCAGATCCAGCGCCAGCACCGTCAGGTTCTACGAGCACTGGCAGTCGTCGCGGGCGCGGTTCCCGGGGAAGCACGAGCAGTTCGTGTTCGACCGGATCGTCAAGGAAGGCGTGCCGCCGCACGTCGGCGCCACCGTGCGGTTCCTCGACACGGGCCACTTCGGCGGGTTCTGCCAGCACGGCAAGGACCTCGGCAGGGTTGTCACCATGCACGCCAACTGCTGCGTTGGGCTGCACAACAAGCTCTTCGATCTGAGGAATGTGCTCGACGATTGGAAGACGTATAAGGAAAGGGTTGCTGCCGGGAACATGGACTACTTCTCATGGAGGGTGCCAGGGAGGTGCATACATTGATAGGTGTGGGTGTTTTCTCAGGGCTTGTGCGGTTAATCCCTCCCTCCTCTAAGAAAAAATTCAGCGGATTTAATTTCATACCTTATCTACCCCGATCATTTTCTTAAGAGATCAACCGAATAAGCCCTAAATGAATTTGAGTTGGGACATGATGAGAGGGGGGTGTACCTGCATGTAAAGTGCTATTGAATTCAATTCTTTCTTATTAGTGGTAGCTTGTACATGATGCATGAGAAATGTACTCAACTAGTGTGTCTAAGATGCATATGAGACATTCCCTATTTATTGTATATTCATTTTTATCCTCTCAAATAATTAATGCATTAGTT]
[+] EMBL AK065831 [CGATCGCTCGCTCGCTCGCACTTCAGTTCTGGCGGCGCGCGCGGTGGCAGGGCCGGCCATGACGAAGTCGGCCACCTCGCTCCTGCTCGGCGCGGCCCTCGCCACGGTCTTCTTCCTGCTCTACACCTCCGTCTGCCGCGACCTCGGCGACGGGCCTCCAAAATCCTCGCCGCCGCGCTGGGCGCATGCGCAGGAGCAGGGGACCGCCACCGTCACGCCGGCCACGAGGGTCGTCGACGCCGAGCAGGGGACCGGCCGCCCGGGGAGGCAAGAAGAGGAAGTGGTTGCTCCAAGAGAGGAGAAGCAGACCAAGGACGAAGCGGCTTCGCGCAGCGGCCATGGCGGCGGCTCGGTAGAGCAGCAGCAAAACCAGCGAAGGATCGTGATGCCCACAAGCCAACAGAAGGAGACGCCATCGTCGCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGACAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGACCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCTGGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTACTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTACCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAGCTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCCCGGATGCACAGGT GGTGATGTCCTCCGACTTCTTCGTCGGCGACCCAACCTCACCAGGGAACTACCCCAACGGCGGCCTCCTGTACGTCAGATCCAGCGCCAGCACCGTCAGGTTCTACGAGCACTGGCAGTCGTCGCGGGCGCGGTTCCCGGGGAAGCACGAGCAGTTCGTGTTCGACCGGATCGTCAAGGAAGGCGTGCCGCCGCACGTCGGCGCCACCGTGCGGTTCCTCGACACGGGCCACTTCGGCGGGTTCTGCCAGCACGGCAAGGACCTCGGCAGGGTTGTCACCATGCACGCCAACTGCTGCGTTGGGCTGCACAACAAGCTCTTCGATCTGAGGAATGTGCTCGACGATTGGAAGACGTATAAGGAAAGGGTTGCTGCCGGGAACATGGACTACTTCTCATGGAGGGTGCCAGGGAGGTGCATACATTGATAGGTGTGGGTGTTTTCTCAGGGCTTGTGCGGTTAATCCCTCCCTCCTCTAAGAAAAAATTCAGCGGATTTAATTTCATACCTTATCTACCCCGATCATTTTCTTAAGAGATCAACCGAATAAGCCCTAAATGAATTTGAGTTGGGACATGATGAGAGGGGGGTGTTCCTGCATGTAAAGTGCTATTGAATTCAATTCTTTCTTATTAGTGGTAGCTTGTACATGATGCATGAGAAATGTACTCAACTAGTGTGTCTAAGATGCATATGAGAC ]
[+] EMBL CB665225 [ GCTCGGCGCGGCCCTCGCCACGGTCTTCTTCCTGCTCTACACCTCCGTCTGCCGCGACCTCGGCGACGGGCCTCCAAAATCCTCGCCGCCGCGCTGGGCGCATGCGCAGGAGCAGGGGACCGCCACCGTCACGCCGGCCACGAGGGTCGTCGACGCCGAGCAGGGGACCGGCCGCCCGGGGAGGCAAGAAGAGGAAGTGGTTGCTCCAAGAGAGGAGAAGCAGACCAAGGACGAAGCGGCTTCGCGCAGCGGCCATGGCGGCGGCTCGGTAGAGCAGCAGCAAAACCAGCGAAGGATCGTGATGCCCACAAGCCAACAGAAGGAGACGCCATCGTCGCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGACAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGACCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCTGGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTACTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTACCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAGCTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCCCGGATGCACAGGTGGGTGATGTCCTCCGACTTCTTCGTCGGCGACCC ]
[-] EMBL CB665226 [ GGCCTCCTGTACGTCAGATCCAGCGCCAGCACCGTCAGGTTCTACGAGCACTGGCAGTCGTCGCGGGCGCGGTTCCCGGGGAAGCACGAGCAGTTCGTGTTCGACCGGATCGTCAAGGAAGGCGTGCCGCCGCACGTCGGCGCCACCGTGCGGTTCCTCGACACGGGCCACTTCGGCGGGTTTTGCCAGCACGGCAAGGACCTCGGCAGGGTTGTCACCATGCACGCCAACTGCTGCGTTGGGCTGCACAACAAGCTCTTCGATCTGAGGAATGTGCTCGACGATTGGAAGACGTATAAGGAAAGGGTTGCTGCCGGGAACATGGACTACTTTTCATGGAGGGTGCCAGGGAGGTGCATACATTGATAGGTGTGGGTGTTTTCTCAGGGCTTGTGCGGTTAATCCCTCCCTCCTCTAAGAAAAAATTCAGCGGATTTAATTTCATACCTTATCTACCCCGATCATTTTCTTAAGAGATCAACCGAATAAGCCCTAAATGAATTTGAGTTGGGACATGATGAGAGGGGGGTGTACCTGCATGTAAAGTGCTATTGAATTCAATTCTTTTTTATTAGTGGTAGCTTGTACATGATGCATGAGAAATGTACTCAACTAGTGTGTTTAAGATGCATATGAGACATTCCCTATTTATTGTATATTCATTTTTATCCTCTCAAATAATTAATGCATTAGTT]
[+] EMBL CB096483 [ AGGGGGGTGTACCTGCATGTAAAGTGCTATTGAATT ATTCTTTCTTATTAGTGGTAGCTTGTACATGATGCATGAGAAATGTACTCAACTAGTGTGTCTAAGATGCATATGAGACATTCCCTATTTA ]
consensusID : consensus_9709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[CCTTTCCTTGAATAACGTTTAATTGGGAAGCAGAAGGAGACGCCATCGTCGCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGACAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGACCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCTGGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTACTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTACCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAGCTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCC]
[+] EMBL CF296759 [CCTTTCCTTGAATAACGTTTAATTGGGAAGCAGAAGGAGACGCCATCGTCGCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGACAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGACCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCTGGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTACTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTACCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAGCTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCC]
consensusID : consensus_9709#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence
[TCCGCGACCTCGCGACGGCCCTCCAAAAATCCTCCCGCCCGCGCTGGGCCATGCCAGGACAGGGGACCGCCACCGTCACGCCGCCACGAGGGTCGTCGACGCCGACAGGGGACCGCCCCCCCGGGGAGCAAGAAGAGGAAGTGTTGCTCCAAGAGAGGAGAACCAGACCAAGGACGAACGCTTCGCCACAGCCCATGCGCGCTCGTAGACCACCCACCAAAACCAGCGAAGGATCTGATCCCCACAACCCAACAGTCCTTTTAGTTCCCTTTCGTCTCCTTGCTTTCAAAAAAGAAA]
[+] EMBL BI796377 [TCCGCGACCTCGCGACGGCCCTCCAAAAATCCTCCCGCCCGCGCTGGGCCATGCCAGGACAGGGGACCGCCACCGTCACGCCGCCACGAGGGTCGTCGACGCCGACAGGGGACCGCCCCCCCGGGGAGCAAGAAGAGGAAGTGTTGCTCCAAGAGAGGAGAACCAGACCAAGGACGAACGCTTCGCCACAGCCCATGCGCGCTCGTAGACCACCCACCAAAACCAGCGAAGGATCTGATCCCCACAACCCAACAGTCCTTTTAGTTCCCTTTCGTCTCCTTGCTTTCAAAAAAGAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9709#0 CGATCGCTCGCTCGCTCGCACTTCAGTTCTGGCGGCGCGCGCGGTGGCAGGGCCGGCCAT 60
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 GACGAAGTCGGCCACCTCGCTCCTGCTCGGCGCGGCCCTCGCCACGGTCTTCTTCCTGCT 120
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 CTACACCTCCGTCTGCCGCGACCTCGGCGACGGGCCTCCAAAATCCTCGCCGCCGCGCTG 180
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 GGCGCATGCGCAGGAGCAGGGGACCGCCACCGTCACGCCGGCCACGAGGGTCGTCGACGC 240
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 CGAGCAGGGGACCGGCCGCCCGGGGAGGCAAGAAGAGGAAGTGGTTGCTCCAAGAGAGGA 300
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 GAAGCAGACCAAGGACGAAGCGGCTTCGCGCAGCGGCCATGGCGGCGGCTCGGTAGAGCA 360
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 GCAGCAAAACCAGCGAAGGATCGTGATGCCCACAAGCCAACAGAAGGAGACGCCATCGTC 420
consensus_9709#1 --------CCTTTCCTTGAATAACGTT--TAATTGGGAAGCAGAAGGAGACGCCATCGTC 50
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 GCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGA 480
consensus_9709#1 GCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGA 110
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 CAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGA 540
consensus_9709#1 CAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGA 170
consensus_9709#2 ----------TCCGCGACCTCG--CGACGGCCCTCCAAAAATCCTCCCGCCCGCGCTGGG 48
*** ** * *** * * * * ****
consensus_9709#0 CCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCT 600
consensus_9709#1 CCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCT 230
consensus_9709#2 CCATGCCAGGACAGGGGACCGCCACCGTCACGCCGCCACGAGGGTCGT-CGACGCCGACA 107
** * * * *** *** * * * * * * * ** ** * ** *
consensus_9709#0 GGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTA 660
consensus_9709#1 GGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTA 290
consensus_9709#2 GGGGACCGCCCCC--CCGGGGAGCA---AGAAGAGGAAGTGTTGCTCCAAGAGAGGAGAA 162
** * *** * ** * ** * * * * * * * *
consensus_9709#0 CTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTA 720
consensus_9709#1 CTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTA 350
consensus_9709#2 CCAGACCAAGGACGAACGCTTCGCCACAGCCCATGCGCGCTCGTAGACCACCCACCAAAA 222
* * ** ** *** * * * * *** * ** ***** * * * * *
consensus_9709#0 CCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAG 780
consensus_9709#1 CCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAG 410
consensus_9709#2 CCAGCGAAGGATCTG----ATCCCCACAACCCAACAGTC---CTTTTAGTTCCCTTTCGT 275
** * * *** ** * ** *** *** * * * ** ** ***
consensus_9709#0 CTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCCC 840
consensus_9709#1 CTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCC- 469
consensus_9709#2 CTCCTTGCTTTCAAAAAAGAAA-------------------------------------- 297
** * * * * * * *
consensus_9709#0 GGATGCACAGGTGGTGATGTCCTCCGACTTCTTCGTCGGCGACCCAACCTCACCAGGGAA 900
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 CTACCCCAACGGCGGCCTCCTGTACGTCAGATCCAGCGCCAGCACCGTCAGGTTCTACGA 960
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 GCACTGGCAGTCGTCGCGGGCGCGGTTCCCGGGGAAGCACGAGCAGTTCGTGTTCGACCG 1020
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 GATCGTCAAGGAAGGCGTGCCGCCGCACGTCGGCGCCACCGTGCGGTTCCTCGACACGGG 1080
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 CCACTTCGGCGGGTTCTGCCAGCACGGCAAGGACCTCGGCAGGGTTGTCACCATGCACGC 1140
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 CAACTGCTGCGTTGGGCTGCACAACAAGCTCTTCGATCTGAGGAATGTGCTCGACGATTG 1200
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 GAAGACGTATAAGGAAAGGGTTGCTGCCGGGAACATGGACTACTTCTCATGGAGGGTGCC 1260
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 AGGGAGGTGCATACATTGATAGGTGTGGGTGTTTTCTCAGGGCTTGTGCGGTTAATCCCT 1320
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 CCCTCCTCTAAGAAAAAATTCAGCGGATTTAATTTCATACCTTATCTACCCCGATCATTT 1380
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 TCTTAAGAGATCAACCGAATAAGCCCTAAATGAATTTGAGTTGGGACATGATGAGAGGGG 1440
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 GGTGTACCTGCATGTAAAGTGCTATTGAATTCAATTCTTTCTTATTAGTGGTAGCTTGTA 1500
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 CATGATGCATGAGAAATGTACTCAACTAGTGTGTCTAAGATGCATATGAGACATTCCCTA 1560
consensus_9709#1 ------------------------------------------------------------
consensus_9709#2 ------------------------------------------------------------
consensus_9709#0 TTTATTGTATATTCATTTTTATCCTCTCAAATAATTAATGCATTAGTT 1608
consensus_9709#1 ------------------------------------------------
consensus_9709#2 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||