These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1608 fasta sequence [CGATCGCTCGCTCGCTCGCACTTCAGTTCTGGCGGCGCGCGCGGTGGCAGGGCCGGCCATGACGAAGTCGGCCACCTCGCTCCTGCTCGGCGCGGCCCTCGCCACGGTCTTCTTCCTGCTCTACACCTCCGTCTGCCGCGACCTCGGCGACGGGCCTCCAAAATCCTCGCCGCCGCGCTGGGCGCATGCGCAGGAGCAGGGGACCGCCACCGTCACGCCGGCCACGAGGGTCGTCGACGCCGAGCAGGGGACCGGCCGCCCGGGGAGGCAAGAAGAGGAAGTGGTTGCTCCAAGAGAGGAGAAGCAGACCAAGGACGAAGCGGCTTCGCGCAGCGGCCATGGCGGCGGCTCGGTAGAGCAGCAGCAAAACCAGCGAAGGATCGTGATGCCCACAAGCCAACAGAAGGAGACGCCATCGTCGCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGACAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGACCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCTGGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTACTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTACCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAGCTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCCCGGATGCACAGGT-GGTGATGTCCTCCGACTTCTTCGTCGGCGACCCAACCTCACCAGGGAACTACCCCAACGGCGGCCTCCTGTACGTCAGATCCAGCGCCAGCACCGTCAGGTTCTACGAGCACTGGCAGTCGTCGCGGGCGCGGTTCCCGGGGAAGCACGAGCAGTTCGTGTTCGACCGGATCGTCAAGGAAGGCGTGCCGCCGCACGTCGGCGCCACCGTGCGGTTCCTCGACACGGGCCACTTCGGCGGGTTCTGCCAGCACGGCAAGGACCTCGGCAGGGTTGTCACCATGCACGCCAACTGCTGCGTTGGGCTGCACAACAAGCTCTTCGATCTGAGGAATGTGCTCGACGATTGGAAGACGTATAAGGAAAGGGTTGCTGCCGGGAACATGGACTACTTCTCATGGAGGGTGCCAGGGAGGTGCATACATTGATAGGTGTGGGTGTTTTCTCAGGGCTTGTGCGGTTAATCCCTCCCTCCTCTAAGAAAAAATTCAGCGGATTTAATTTCATACCTTATCTACCCCGATCATTTTCTTAAGAGATCAACCGAATAAGCCCTAAATGAATTTGAGTTGGGACATGATGAGAGGGGGGTGTACCTGCATGTAAAGTGCTATTGAATTCAATTCTTTCTTATTAGTGGTAGCTTGTACATGATGCATGAGAAATGTACTCAACTAGTGTGTCTAAGATGCATATGAGACATTCCCTATTTATTGTATATTCATTTTTATCCTCTCAAATAATTAATGCATTAGTT] [+] EMBL AK065831 [CGATCGCTCGCTCGCTCGCACTTCAGTTCTGGCGGCGCGCGCGGTGGCAGGGCCGGCCATGACGAAGTCGGCCACCTCGCTCCTGCTCGGCGCGGCCCTCGCCACGGTCTTCTTCCTGCTCTACACCTCCGTCTGCCGCGACCTCGGCGACGGGCCTCCAAAATCCTCGCCGCCGCGCTGGGCGCATGCGCAGGAGCAGGGGACCGCCACCGTCACGCCGGCCACGAGGGTCGTCGACGCCGAGCAGGGGACCGGCCGCCCGGGGAGGCAAGAAGAGGAAGTGGTTGCTCCAAGAGAGGAGAAGCAGACCAAGGACGAAGCGGCTTCGCGCAGCGGCCATGGCGGCGGCTCGGTAGAGCAGCAGCAAAACCAGCGAAGGATCGTGATGCCCACAAGCCAACAGAAGGAGACGCCATCGTCGCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGACAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGACCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCTGGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTACTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTACCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAGCTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCCCGGATGCACAGGT GGTGATGTCCTCCGACTTCTTCGTCGGCGACCCAACCTCACCAGGGAACTACCCCAACGGCGGCCTCCTGTACGTCAGATCCAGCGCCAGCACCGTCAGGTTCTACGAGCACTGGCAGTCGTCGCGGGCGCGGTTCCCGGGGAAGCACGAGCAGTTCGTGTTCGACCGGATCGTCAAGGAAGGCGTGCCGCCGCACGTCGGCGCCACCGTGCGGTTCCTCGACACGGGCCACTTCGGCGGGTTCTGCCAGCACGGCAAGGACCTCGGCAGGGTTGTCACCATGCACGCCAACTGCTGCGTTGGGCTGCACAACAAGCTCTTCGATCTGAGGAATGTGCTCGACGATTGGAAGACGTATAAGGAAAGGGTTGCTGCCGGGAACATGGACTACTTCTCATGGAGGGTGCCAGGGAGGTGCATACATTGATAGGTGTGGGTGTTTTCTCAGGGCTTGTGCGGTTAATCCCTCCCTCCTCTAAGAAAAAATTCAGCGGATTTAATTTCATACCTTATCTACCCCGATCATTTTCTTAAGAGATCAACCGAATAAGCCCTAAATGAATTTGAGTTGGGACATGATGAGAGGGGGGTGTTCCTGCATGTAAAGTGCTATTGAATTCAATTCTTTCTTATTAGTGGTAGCTTGTACATGATGCATGAGAAATGTACTCAACTAGTGTGTCTAAGATGCATATGAGAC ] [+] EMBL CB665225 [ GCTCGGCGCGGCCCTCGCCACGGTCTTCTTCCTGCTCTACACCTCCGTCTGCCGCGACCTCGGCGACGGGCCTCCAAAATCCTCGCCGCCGCGCTGGGCGCATGCGCAGGAGCAGGGGACCGCCACCGTCACGCCGGCCACGAGGGTCGTCGACGCCGAGCAGGGGACCGGCCGCCCGGGGAGGCAAGAAGAGGAAGTGGTTGCTCCAAGAGAGGAGAAGCAGACCAAGGACGAAGCGGCTTCGCGCAGCGGCCATGGCGGCGGCTCGGTAGAGCAGCAGCAAAACCAGCGAAGGATCGTGATGCCCACAAGCCAACAGAAGGAGACGCCATCGTCGCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGACAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGACCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCTGGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTACTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTACCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAGCTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCCCGGATGCACAGGTGGGTGATGTCCTCCGACTTCTTCGTCGGCGACCC ] [-] EMBL CB665226 [ GGCCTCCTGTACGTCAGATCCAGCGCCAGCACCGTCAGGTTCTACGAGCACTGGCAGTCGTCGCGGGCGCGGTTCCCGGGGAAGCACGAGCAGTTCGTGTTCGACCGGATCGTCAAGGAAGGCGTGCCGCCGCACGTCGGCGCCACCGTGCGGTTCCTCGACACGGGCCACTTCGGCGGGTTTTGCCAGCACGGCAAGGACCTCGGCAGGGTTGTCACCATGCACGCCAACTGCTGCGTTGGGCTGCACAACAAGCTCTTCGATCTGAGGAATGTGCTCGACGATTGGAAGACGTATAAGGAAAGGGTTGCTGCCGGGAACATGGACTACTTTTCATGGAGGGTGCCAGGGAGGTGCATACATTGATAGGTGTGGGTGTTTTCTCAGGGCTTGTGCGGTTAATCCCTCCCTCCTCTAAGAAAAAATTCAGCGGATTTAATTTCATACCTTATCTACCCCGATCATTTTCTTAAGAGATCAACCGAATAAGCCCTAAATGAATTTGAGTTGGGACATGATGAGAGGGGGGTGTACCTGCATGTAAAGTGCTATTGAATTCAATTCTTTTTTATTAGTGGTAGCTTGTACATGATGCATGAGAAATGTACTCAACTAGTGTGTTTAAGATGCATATGAGACATTCCCTATTTATTGTATATTCATTTTTATCCTCTCAAATAATTAATGCATTAGTT] [+] EMBL CB096483 [ AGGGGGGTGTACCTGCATGTAAAGTGCTATTGAATT ATTCTTTCTTATTAGTGGTAGCTTGTACATGATGCATGAGAAATGTACTCAACTAGTGTGTCTAAGATGCATATGAGACATTCCCTATTTA ] consensusID : consensus_9709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [CCTTTCCTTGAATAACGTTTAATTGGGAAGCAGAAGGAGACGCCATCGTCGCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGACAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGACCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCTGGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTACTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTACCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAGCTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCC] [+] EMBL CF296759 [CCTTTCCTTGAATAACGTTTAATTGGGAAGCAGAAGGAGACGCCATCGTCGCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGACAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGACCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCTGGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTACTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTACCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAGCTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCC] consensusID : consensus_9709#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [TCCGCGACCTCGCGACGGCCCTCCAAAAATCCTCCCGCCCGCGCTGGGCCATGCCAGGACAGGGGACCGCCACCGTCACGCCGCCACGAGGGTCGTCGACGCCGACAGGGGACCGCCCCCCCGGGGAGCAAGAAGAGGAAGTGTTGCTCCAAGAGAGGAGAACCAGACCAAGGACGAACGCTTCGCCACAGCCCATGCGCGCTCGTAGACCACCCACCAAAACCAGCGAAGGATCTGATCCCCACAACCCAACAGTCCTTTTAGTTCCCTTTCGTCTCCTTGCTTTCAAAAAAGAAA] [+] EMBL BI796377 [TCCGCGACCTCGCGACGGCCCTCCAAAAATCCTCCCGCCCGCGCTGGGCCATGCCAGGACAGGGGACCGCCACCGTCACGCCGCCACGAGGGTCGTCGACGCCGACAGGGGACCGCCCCCCCGGGGAGCAAGAAGAGGAAGTGTTGCTCCAAGAGAGGAGAACCAGACCAAGGACGAACGCTTCGCCACAGCCCATGCGCGCTCGTAGACCACCCACCAAAACCAGCGAAGGATCTGATCCCCACAACCCAACAGTCCTTTTAGTTCCCTTTCGTCTCCTTGCTTTCAAAAAAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9709#0 CGATCGCTCGCTCGCTCGCACTTCAGTTCTGGCGGCGCGCGCGGTGGCAGGGCCGGCCAT 60 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 GACGAAGTCGGCCACCTCGCTCCTGCTCGGCGCGGCCCTCGCCACGGTCTTCTTCCTGCT 120 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 CTACACCTCCGTCTGCCGCGACCTCGGCGACGGGCCTCCAAAATCCTCGCCGCCGCGCTG 180 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 GGCGCATGCGCAGGAGCAGGGGACCGCCACCGTCACGCCGGCCACGAGGGTCGTCGACGC 240 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 CGAGCAGGGGACCGGCCGCCCGGGGAGGCAAGAAGAGGAAGTGGTTGCTCCAAGAGAGGA 300 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 GAAGCAGACCAAGGACGAAGCGGCTTCGCGCAGCGGCCATGGCGGCGGCTCGGTAGAGCA 360 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 GCAGCAAAACCAGCGAAGGATCGTGATGCCCACAAGCCAACAGAAGGAGACGCCATCGTC 420 consensus_9709#1 --------CCTTTCCTTGAATAACGTT--TAATTGGGAAGCAGAAGGAGACGCCATCGTC 50 consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 GCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGA 480 consensus_9709#1 GCCGCCCCAGCGGCAGCAGCAGGACCTGGGCGAGCTGCTCCGGCGAGCGGCGACGCCGGA 110 consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 CAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGA 540 consensus_9709#1 CAAGACGGTGCTGATGACGGCGATCAACGAGGCGTGGGCGGCTCCGGGGTCGTTCCTGGA 170 consensus_9709#2 ----------TCCGCGACCTCG--CGACGGCCCTCCAAAAATCCTCCCGCCCGCGCTGGG 48 *** ** * *** * * * * **** consensus_9709#0 CCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCT 600 consensus_9709#1 CCTGTTCCTGGAGAGCTTCCGGCACGGCGAGGGCACGGAGCACCTTGTGCGGCACCTGCT 230 consensus_9709#2 CCATGCCAGGACAGGGGACCGCCACCGTCACGCCGCCACGAGGGTCGT-CGACGCCGACA 107 ** * * * *** *** * * * * * * * ** ** * ** * consensus_9709#0 GGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTA 660 consensus_9709#1 GGTGGTGGCCATGGACGGGAGGGCGTTCGAGCGGTGCAACGCCGTCCACCAATTCTGCTA 290 consensus_9709#2 GGGGACCGCCCCC--CCGGGGAGCA---AGAAGAGGAAGTGTTGCTCCAAGAGAGGAGAA 162 ** * *** * ** * ** * * * * * * * * consensus_9709#0 CTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTA 720 consensus_9709#1 CTGGTTCAGGGTCGACGGGATGGACTTCGCCGCCGAGCAGTCGTACATGAAGGGCGACTA 350 consensus_9709#2 CCAGACCAAGGACGAACGCTTCGCCACAGCCCATGCGCGCTCGTAGACCACCCACCAAAA 222 * * ** ** *** * * * * *** * ** ***** * * * * * consensus_9709#0 CCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAG 780 consensus_9709#1 CCTGGAGATGATGTGGAGGAGGAACAGGTTCCAGCAGACCATCCTCGAGCTCGGCTTCAG 410 consensus_9709#2 CCAGCGAAGGATCTG----ATCCCCACAACCCAACAGTC---CTTTTAGTTCCCTTTCGT 275 ** * * *** ** * ** *** *** * * * ** ** *** consensus_9709#0 CTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCCC 840 consensus_9709#1 CTTCCTCTTCACGGACGTGGACATCCTGTGGTTTCGGAGCCCCTTCCCGCACCTATCCC- 469 consensus_9709#2 CTCCTTGCTTTCAAAAAAGAAA-------------------------------------- 297 ** * * * * * * * consensus_9709#0 GGATGCACAGGTGGTGATGTCCTCCGACTTCTTCGTCGGCGACCCAACCTCACCAGGGAA 900 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 CTACCCCAACGGCGGCCTCCTGTACGTCAGATCCAGCGCCAGCACCGTCAGGTTCTACGA 960 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 GCACTGGCAGTCGTCGCGGGCGCGGTTCCCGGGGAAGCACGAGCAGTTCGTGTTCGACCG 1020 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 GATCGTCAAGGAAGGCGTGCCGCCGCACGTCGGCGCCACCGTGCGGTTCCTCGACACGGG 1080 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 CCACTTCGGCGGGTTCTGCCAGCACGGCAAGGACCTCGGCAGGGTTGTCACCATGCACGC 1140 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 CAACTGCTGCGTTGGGCTGCACAACAAGCTCTTCGATCTGAGGAATGTGCTCGACGATTG 1200 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 GAAGACGTATAAGGAAAGGGTTGCTGCCGGGAACATGGACTACTTCTCATGGAGGGTGCC 1260 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 AGGGAGGTGCATACATTGATAGGTGTGGGTGTTTTCTCAGGGCTTGTGCGGTTAATCCCT 1320 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 CCCTCCTCTAAGAAAAAATTCAGCGGATTTAATTTCATACCTTATCTACCCCGATCATTT 1380 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 TCTTAAGAGATCAACCGAATAAGCCCTAAATGAATTTGAGTTGGGACATGATGAGAGGGG 1440 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 GGTGTACCTGCATGTAAAGTGCTATTGAATTCAATTCTTTCTTATTAGTGGTAGCTTGTA 1500 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 CATGATGCATGAGAAATGTACTCAACTAGTGTGTCTAAGATGCATATGAGACATTCCCTA 1560 consensus_9709#1 ------------------------------------------------------------ consensus_9709#2 ------------------------------------------------------------ consensus_9709#0 TTTATTGTATATTCATTTTTATCCTCTCAAATAATTAATGCATTAGTT 1608 consensus_9709#1 ------------------------------------------------ consensus_9709#2 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||