These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 864 fasta sequence [ACGAGACAAGGGGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACCCGTGTTGTGTATCGATCTGTTGTCCCTGAGCGTTCGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTTCTAGCAGCTTGCATATCGGTTCATGGAGATGAACACAAGAACAACAGAA-CAGGTTGTGTATAGCTAGTTCAAAACGTGACATCTGTACCTGTCTCGACTCGTCTCACGTCTCCCCGAGTCTACACGTCACCACGCACGTACGTACGACGACACACAACTCTCACATGAAGATGCTCCGTCTGACACTCGACACAACACGGAAGGGCCACGTTCCTTCTCCAAAACGTTCTTCCGCAACTCTGCAGGTCTGCATCAAATATTTTCCAAATATTTTTCTTTTTTAGAGGGGTTGTGGGTACCTGTCTTGATGCCTTTTGGATCTCAANGGCCACACCGCTGTACCGGTGCACGCGCTGTCGCGTNACGGCGCGTGGAGCGGGTTCCACAGCGCCAGGACGCCGTANTGGTCACCGACAGGGGTGTGAAAAACCGCCGGTNACCGNGCGGNTACCGNCCGTACCGGGGGGGGTACCGGGTTACCCCGTACCGNGCCGGTAC] [+] EMBL CA765913 [ACGAGACAAGGGGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACCCGTGTTGTGTATCGATCTGTTGTCCCTGAGCGTTCGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTTCTAGCAGCTTGCATATCGGTTCATGGAGATGAACACAAGAACAACAGAA CAGGTTGTGTATAGCTAGTTCAAAACGTGACATCTGTACCTGTCTCGACTCGTCTCACGTCTCCCCGAGTCTACACGTCACCACGCACGTACGTACGACGACACACAACTCTCACATGAAGATGCTCCGTCTGACACTCGACACAACACGGAAGGGCCACGTTCCTTCTCCAAAACGTTCTTCCGCAACTCTGCAGGTCTGCATCAAATATTTTCCAAATATTTTTCTTTTTTAGAGGGGTTGTGGGTACCTGTCTTGATGCCTTTTGGATCTCAANGGCCACACCGCTGTACCGGTGCACGCGCTGTCGCGTNACGGCGCGTGGAGCGGGTTCCACAGCGCCAGGACGCCGTANTGGTCACCGACAGGGGTGTGAAAAACCGCCGGTNACCGNGCGGNTACCGNCCGTACCGGGGGGGGTACCGGGTTACCCCGTACCGNGCCGGTAC] [+] EMBL BI796868 [ ATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTGTGTATCGATCTGTTGTCCCTGAGCGTTCGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTTCTAGCAGCTTGCATATCGGTTCATGGAGATGAACACAAGAAC ACAGAACCAGGTTGTGTATAGCTAGTTCAAAACGTGACATCTGTAaaaa ] consensusID : consensus_9712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 822 fasta sequence [GACCGCGGCGACGCGCTCCCGCTCGGCCTGCCCCAGATCATGATGGCTCTCACCCGCGACGGACAGCTCCGCCAAGAACTCGCCAAATGTGTGGAGGAGAAGTTCAGCGTGTCGTTCGACAAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTTCTAGCAGCTTGATGAACACAAGAACAACAGAACAGGTTGTGTATAGCTAGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTATTCCCGTAACAAACAAAAGGGAAAATTTTTAAAAACCTAAAAAATAACCCCTTTAAAAAAGGGAAAATTTAAACTTGGGGAAAAAAAGGGAAAAACTTGTTCCCGGGAAAAAATGGTAACCCCTTAAAAATTCAAAAAAAAAAAAAACCGGAAACAAAAAAGGGAAAACCCGGGGGGCCCAAAAAAGGAACCAACCC] [+] EMBL AF049892 [GACCGCGGCGACGCGCTCCCGCTCGGCCTGCCCCAGATCATGATGGCTCTCACCCGCGACGGACAGCTCCGCCAAGAACTCGCCAAATGTGTGGAGGAGAAGTTCAGCGTGTCGTTCGACAAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTTCTAGCAGCTTGATGAACACAAGAACAACAGAACAGGTTGTGTATAGCTAGTTCAAAAAAAA ] [+] EMBL CF314561 [ TGTAGTACCTGTAGCCTCTTTTCTAGCAGCTTGATGAACACAAGAACAACAGAACAGGTTGTGTATAGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTATTCCCGTAACAAACAAAAGGGAAAATTTTTAAAAACCTAAAAAATAACCCCTTTAAAAAAGGGAAAATTTAAACTTGGGGAAAAAAAGGGAAAAACTTGTTCCCGGGAAAAAATGGTAACCCCTTAAAAATTCAAAAAAAAAAAAAACCGGAAACAAAAAAGGGAAAACCCGGGGGGCCCAAAAAAGGAACCAACCC] consensusID : consensus_9712#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [GACCGCGGCGACGCGCTCCCGCTCGGCCTGCCCCAGATCATGATGGCTCTCACCCGCGACGGCCAGCTCCGCCAAGAACTCGCCAAATGTACGTGCAAAATCATTCATGTTCAATTGTGTTTTTTTCTCCAATCTATCGTCAGTCGTCACAGCTTAACTACTTGTGTTGGTGATTGGTGCGTGCATTGCAGGTGTGGAGGAGAAGTTCAGCGTGTCGTTCGACAAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTCCTAGCAGCTTGATGAACACAAGAACAACAGAA] [+] EMBL AK073481 [GACCGCGGCGACGCGCTCCCGCTCGGCCTGCCCCAGATCATGATGGCTCTCACCCGCGACGGCCAGCTCCGCCAAGAACTCGCCAAATGTACGTGCAAAATCATTCATGTTCAATTGTGTTTTTTTCTCCAATCTATCGTCAGTCGTCACAGCTTAACTACTTGTGTTGGTGATTGGTGCGTGCATTGCAGGTGTGGAGGAGAAGTTCAGCGTGTCGTTCGACAAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACGGGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTCCTAGCAGCTTGATGAACACAAGAACAACAGAA] consensusID : consensus_9712#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence [ACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTCCCCTTAAATAAAAAAGGGGAAATTTTTTTAAACCCGGAAGAATTCCCCCTTTAAGGGGGGGTAATTTTAAACTTGGGAAAAAAAAGGGAAAAACCTTTTCCTTGGAAAAA] [+] EMBL CF314756 [ACTCGTGTTATGTATCGATCTGTTGTCCCTGAGCGTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTTCCCCTTAAATAAAAAAGGGGAAATTTTTTTAAACCCGGAAGAATTCCCCCTTTAAGGGGGGGTAATTTTAAACTTGGGAAAAAAAAGGGAAAAACCTTTTCCTTGGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9712#1 GACCGCGGCGACGCGCTCCCGCTCGGCCTGCCCCAGATCATGATGGCTCTCACCCGCGAC 60 consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 ------------------------------------------------------------ consensus_9712#2 ------------------------------------------------------------ consensus_9712#1 GGACAGCTCCGCCAAGAACTCGCCAAATGTGTGGAGGAGAAGTTCAGCGTGTCGTTCGAC 120 consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 ------------------------------------------------------------ consensus_9712#2 ------------------------------------------------------------ consensus_9712#1 AAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCGCTGGCG 180 consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 ------------------------------------------------------------ consensus_9712#2 ------------------------------------------------------------ consensus_9712#1 AATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCGATGACT 240 consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 ------------------------------------------------------------ consensus_9712#2 -----------------------GACCGCGGCGACGCGCTCCCGCTCGGCCTGCCCCAGA 37 consensus_9712#1 ACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTGAGCGAC 300 consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 ------------------------------------------------------------ consensus_9712#2 TCATGATGGCTCTCACCCGCGACGGCCAGCTCCGCCAAGAACTCGCCAAATGTACGTGCA 97 consensus_9712#1 GACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCATATCACG 360 consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 ------------------------------------------------------------ consensus_9712#2 AAATCATTCATGTTCAATTGTGTTTTTTTCTCCAATCTATCGTCAGTCGTCACAGCTTAA 157 consensus_9712#1 GGATGCTCCGATTAGCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTGTCCCTGA 420 consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 -----------------------------------------------------------A 1 consensus_9712#2 CTACTTGTGTTGGTGATTGGTGCGTGCATTGCAGGTGTGGAGGAGAAGTTCAGCGTGTCG 217 consensus_9712#1 GCGTTTGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCCTCTTTTC 480 consensus_9712#3 ------------------------------ACTCGTGTTATGTATCGATCTGTTGTCCCT 30 consensus_9712#0 CGAGACAAGGGGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCG 61 consensus_9712#2 TTCGACAAGGAGAGGGAGAACCGAGCGTACATGAGCGGCCCGGATCACGGCATCCACCCG 277 * * * * * consensus_9712#1 TAGCAGCTTGATGAACACAAGAACAACAGAACAGGTTGTGTATAGCTAGTTCAAAAAAAA 540 consensus_9712#3 GAGC-GTTTGTTCAAAAAAAAAAAAAAAAAAAAA------------------AAAAAAAA 71 consensus_9712#0 CTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCG 121 consensus_9712#2 CTGGCGAATGCCGCCGGCAAGGGCTTGAAGACCGATCTCCGGGAGGTTGATCTGCCGGCG 337 * * ** ** * * consensus_9712#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 600 consensus_9712#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 131 consensus_9712#0 ATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTG 181 consensus_9712#2 ATGACTACGGCGCACGCCGGGAGGGTTTTCACCTGATGACGACACACTGATGAGCGATTG 397 * * * * * * * * * * * * * * consensus_9712#1 AAAAAAAAAAAAAAAAACCCTTTTATTCCCGTAACAAACAAAAGGGAAAATTTTTAAAAA 660 consensus_9712#3 AAAAAAAAAAAAAAAAACCCTTTTTTCCCCTTAAATAAAAAAGGGGAAATTTTTTTAAAC 191 consensus_9712#0 AGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCAT 241 consensus_9712#2 AGCGACGACTCGACGGCCTTGCTGCTTCTGCCTGACGACGGTTAAGTAGTATGCTAGCAT 457 * * * * * * * * * * * * * * consensus_9712#1 CCTAAAAAATAACCCCTTTAAAAAAGGGAAAATTTAAAC---TTGGGGAAAAAAAGGGAA 717 consensus_9712#3 CCGGAAGAATTCCCCCTTTAAGGGGGGGTAATTTTAAAC---TTGGGAAAAAAAAGGGAA 248 consensus_9712#0 ATCACGGGATGCTCCGATTA-GCTTGTGTACCTTCACCCGTGTTGTGTATCGATCTGTTG 300 consensus_9712#2 ATCACGGGATGCTCCGATTA-GCTTGTGTACCTTCACTCGTGTTATGTATCGATCTGTTG 516 ** ** *** * * * ** * * ** * * * * consensus_9712#1 -----AAACTTGTTCCCGGGAAAAAATGGTAACCCCTTAAAAATTCAAAAAAAAAAAAAA 772 consensus_9712#3 -----AAACCTTTTCCTTGGAAAAA----------------------------------- 268 consensus_9712#0 TCCCTGAGCGTTCGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCC 360 consensus_9712#2 TCCCTGAGCGTTTGTTCTGAAAGAAGCACACTAGAGTATCCGACTGTAGTACCTGTAGCC 576 * * * * ** ** consensus_9712#1 CCGGAAACAAAAAAGGGAAAACCCGGGGGGCCCAAAAAAGGAACCAACCC---------- 822 consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 TCTTTTCTAGCAGCTTGCATATCGGTTCATGGAGATGAACACAAGAACAACAGAACAGGT 420 consensus_9712#2 TCTTTCCTAGCAGCTTG-----------------ATGAACACAAGAACAACAGAA----- 614 consensus_9712#1 ------------------------------------------------------------ consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 TGTGTATAGCTAGTTCAAAACGTGACATCTGTACCTGTCTCGACTCGTCTCACGTCTCCC 480 consensus_9712#2 ------------------------------------------------------------ consensus_9712#1 ------------------------------------------------------------ consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 CGAGTCTACACGTCACCACGCACGTACGTACGACGACACACAACTCTCACATGAAGATGC 540 consensus_9712#2 ------------------------------------------------------------ consensus_9712#1 ------------------------------------------------------------ consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 TCCGTCTGACACTCGACACAACACGGAAGGGCCACGTTCCTTCTCCAAAACGTTCTTCCG 600 consensus_9712#2 ------------------------------------------------------------ consensus_9712#1 ------------------------------------------------------------ consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 CAACTCTGCAGGTCTGCATCAAATATTTTCCAAATATTTTTCTTTTTTAGAGGGGTTGTG 660 consensus_9712#2 ------------------------------------------------------------ consensus_9712#1 ------------------------------------------------------------ consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 GGTACCTGTCTTGATGCCTTTTGGATCTCAANGGCCACACCGCTGTACCGGTGCACGCGC 720 consensus_9712#2 ------------------------------------------------------------ consensus_9712#1 ------------------------------------------------------------ consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 TGTCGCGTNACGGCGCGTGGAGCGGGTTCCACAGCGCCAGGACGCCGTANTGGTCACCGA 780 consensus_9712#2 ------------------------------------------------------------ consensus_9712#1 ------------------------------------------------------------ consensus_9712#3 ------------------------------------------------------------ consensus_9712#0 CAGGGGTGTGAAAAACCGCCGGTNACCGNGCGGNTACCGNCCGTACCGGGGGGGGTACCG 840 consensus_9712#2 ------------------------------------------------------------ consensus_9712#1 ------------------------ consensus_9712#3 ------------------------ consensus_9712#0 GGTTACCCCGTACCGNGCCGGTAC 864 consensus_9712#2 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||