These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1215 fasta sequence [AAGGACGAGCTCGTGGAGAAGAACCTCAAGATGGGCGACGTCCTCCACATCGACGCCGGCTCGACGTTCTACATGGTCAACTCCGGCAAGGGCCAGAGGCTGAAGATCATCTGCAGCATCGACGCCTCCGATAACATCGGCTTCGGCCCTTATCAGGCCTTCTTCCTTGGTGGTGGCGGCGGAGCGGCGGCCGGGCAGTGGAGGCCAGTGGGCAGAGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGGTGGTGGACGAAGCGTCGTCGACGTGGTCGTGGACGAAGCTCGTGGGCCGTCTCCTCGGAGTGGTCGGAGGCGGGGCGCCGTCCAACTCCGTGGCCGCGCAGCCGAAGAAGAAGAAGGACAAGACGGTGCGCGCGCCGGAGCCGTACAACCTCTACGAGCAGGGCACCGGCTTCCGCAACGCCTACGGATCCAGCGTCGCCGTCGACAAGCACGACTACGAGCCCCTCGGCCACTCCGACATCGGCGTCTATCTCGTCAACCTCACCGCCGGATCGATGATGGCGCCGCACGTGAACCCGAGGGCGACGGAGTACGGCGTCGTGCTCAGCGGGACGGGCTGCATCGAGGTCGTGTTCCCGAACGGGTCGAAGGCGATGAGCGCGACGGTGCGCGCCGGCGACGTGTTCTACAT-CCCGCGCTACTTCCCGTTCTGCCAGGTGGCGTCGC-GGGCGGCCCGTTCGTGTTCTTCGGGTTCACGACGTCGGCGCGGCGGAACCACCCTCAGTTCCTCGTCGGCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCGATGAGGAAGCTGGTGCTGGCGCAGAATGAGGCGGTGATCCTGCCGTCCTGGCCGGAGAAGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGAAGGCGGCGAAGCAGAGGAAGCCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAAGCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATCAATCCATGCTTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCC-AACTTTTGTAA-CCATGGGCGTGTCTGCTCAACTTATGTTTGCGCTCTTCGTG-TTGCTTCGGCGTCGCGTTAATAAATAAAGATGCTTCTGCTTTTAAAAAAAAAA] [+] EMBL AK105307 [AAGGACGAGCTCGTGGAGAAGAACCTCAAGATGGGCGACGTCCTCCACATCGACGCCGGCTCGACGTTCTACATGGTCAACTCCGGCAAGGGCCAGAGGCTGAAGATCATCTGCAGCATCGACGCCTCCGATAACATCGGCTTCGGCCCTTATCAGGCCTTCTTCCTTGGTGGTGGCGGCGGAGCGGCGGCCGGGCAGTGGAGGCCAGTGGGCAGAGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGGTGGTGGACGAAGCGTCGTCGACGTGGTCGTGGACGAAGCTCGTGGGCCGTCTCCTCGGAGTGGTCGGAGGCGGGGCGCCGTCCAACTCCGTGGCCGCGCAGCCGAAGAAGAAGAAGGACAAGACGGTGCGCGCGCCGGAGCCGTACAACCTCTACGAGCAGGGCACCGGCTTCCGCAACGCCTACGGATCCAGCGTCGCCGTCGACAAGCACGACTACGAGCCCCTCGGCCACTCCGACATCGGCGTCTATCTCGTCAACCTCACCGCCGGATCGATGATGGCGCCGCACGTGAACCCGAGGGCGACGGAGTACGGCGTCGTGCTCAGCGGGACGGGCTGCATCGAGGTCGTGTTCCCGAACGGGTCGAAGGCGATGAGCGCGACGGTGCGCGCCGGCGACGTGTTCTACAT CCCGCGCTACTTCCCGTTCTGCCAGGTGGCGTCGCGGGGCGGGCCGTTCGTGTTCTTCGGGTTCACGACGTCGGCGCGGCGGAACCACCCTCAGTTCCTCGTCGGCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCGATGAGGAAGCTGGTGCTGGCGCAGAATGAGGCGGTGATCCTGCCGTCCTGGCCGGAGAAGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGAAGGCGGCGAAGCAGAGGAAGCCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAAGCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATCAATCCATGCTTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCCAAACTTTTGTAA CCATGGGCGTGTCTGCTCAACTTATGTTTGCGCTCTTCGTG TTGCTTCGGCGTCGCGTTAATAAATAAAGATGC ] [+] EMBL BI804374 [ GCGACGTGTTCTACAT CCCGCGCTACTTCCCGTTCTGCCAGGTGGCGTCGC GGGCGGCCCGTTCGTGTTCTTCGGGTTCACGACGTCGGCGCGGCGGAACCACCCTCAGTTCCTCGTCGGCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCGATGAGGAAGCTGGTGCTGGCGCAGAATGAGGCGGTGATCCTGCCGTCCTGGCCGGAGAAGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGAAGGCGGCGAAGCAGAGGAAGCCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAAGCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATC ATCCATGCTTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCC AACTTTTGTAA CCATGGGCGTGTCTGCTC ACTTATGTTTGCGCTCTTCGTGCTTGCTTCGGCGTCGCGTTAATAAATAAAGATGCTTCTGCTTTTAAAAA ] [+] EMBL BI797698 [ GTTCTACATCCCCGCGCTACTTCCCGTTCTGCCA GTGGCGTC C GGGCGGCCCGTTCGTGTTCTTCGGGTTCACGACGTCGGCGCGGCGGAACCACCCTCAGTTCCTCGTC GCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTC CC CCGCGTTCGGCGTCCCGGAGAAGGCGATGAGGAAGCTGGTGCTGGCGCAGAATGAGGCGGTGATCCTGCCGTCCTGGCCGGAGAAGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGAAGGCGGCGAAGCAGAGGAA CCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAAGCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATCAATCCATGCTTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCCAAACTTTTGTAACCCATGGGCGTGTCTGCTCAACTTATGTTTGCGCTCTTCGTG TTGCTTCGGCGTCGCGTTAATAAATAAAGATGCTTCTGCTTTTAAAAAAAAAA] [+] EMBL BI802715 [ TCGGGTTCACGACGTC GCGCGGCGGAACCACCCTCAGTTCCTCGTC GCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCGATGAGGAAGCTGGTGCTGGCGCAGAATGAGCCGGTGATCCTGCCGTCCTGGCCGGAGAAGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGAAGGCGGCGAAGCAGAGGAAGCCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAAGCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATCAATCCATGCTTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCC AACTTTTGTAA CCATGGGCGTGTCTGCTCAACTTATGTTTGCGCTCTTCGTG TTGCTTCGGCGTCGCGTTAATAAATAAAGATGCTTCTGCTTTTAAAAAA ] [+] EMBL BI804590 [ GCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCGATGAGGAAGCTGGTGCTGGCGCAGAATGAGGCGGTGATCCTGCCGTCCTGGCCGGAGAAGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGAAGGCGGCGAAGCAGAGGAAGCCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAAGCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATCAATCCATGCTTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCC AACTTTTGTAA CCATGGGCGTGTCTGCTCAACTTATGTTTGCGCTCTTCGTG TTGCTTCGGCGTCGCGTTAATAAATAAAGATGCTTCTGCTTTTACTAAAAAAA] consensusID : consensus_9714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTCAACCTCACCGCCGGATCGATGATGGCGCCGCACGTGACACCCGAGGGCGACGGAGTACGGCGTCGTGCTCAGCGGGACGGGCTGCATCGAGGTCGTGTCCCCGAACGGGTCGAAGGCGATGAGCGCGACGGTGCGCGCCGGCGACGTGTACTACATGCCCGCGCTACTGCCCGTTGCTGCCAGGTGGCGTCCCGGGGCGGGCCGTTCGTGTCCTGCGGGTCCACGACGTCGGCGCGGTCTGGAACCACCCTCAGTGCCTCGTCGGCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCCATGAGGAACTGGTGCTGGCCCAGATGAGCCGTGATTCTGGCCGTCTGGCCGAAAANTAAAAGCAGAGTGGGAGAGACCCAGACAAGTGGAGAANAAAAGCCCGCAGCAAGAACCATGGGTTATCACNGTGCCGCGAGTATACGAGCCCGGTTAGCAACNGCTAATNGATGCACCTTGACCTTTTAAGCCGG] [+] EMBL BQ164674 [CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGTCAACCTCACCGCCGGATCGATGATGGCGCCGCACGTGACACCCGAGGGCGACGGAGTACGGCGTCGTGCTCAGCGGGACGGGCTGCATCGAGGTCGTGTCCCCGAACGGGTCGAAGGCGATGAGCGCGACGGTGCGCGCCGGCGACGTGTACTACATGCCCGCGCTACTGCCCGTTGCTGCCAGGTGGCGTCCCGGGGCGGGCCGTTCGTGTCCTGCGGGTCCACGACGTCGGCGCGGTCTGGAACCACCCTCAGTGCCTCGTCGGCGGCTCCTCCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGGCCATGAGGAACTGGTGCTGGCCCAGATGAGCCGTGATTCTGGCCGTCTGGCCGAAAANTAAAAGCAGAGTGGGAGAGACCCAGACAAGTGGAGAANAAAAGCCCGCAGCAAGAACCATGGGTTATCACNGTGCCGCGAGTATACGAGCCCGGTTAGCAACNGCTAATNGATGCACCTTGACCTTTTAAGCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9714#0 AAGGACGAGCTCGTGGAGAAGAACCTCAAGATGGGCGACGTCCTCCACATCGACGCCGGC 60 consensus_9714#1 ------------------------------------------------------------ consensus_9714#0 TCGACGTTCTACATGGTCAACTCCGGCAAGGGCCAGAGGCTGAAGATCATCTGCAGCATC 120 consensus_9714#1 ------------------------------------------------------------ consensus_9714#0 GACGCCTCCGATAACATCGGCTTCGGCCCTTATCAGGCCTTCTTCCTTGGTGGTGGCGGC 180 consensus_9714#1 ------------------------------------------------------------ consensus_9714#0 GGAGCGGCGGCCGGGCAGTGGAGGCCAGTGGGCAGAGGCGAGGAGGAGGAGGAGGAGGAG 240 consensus_9714#1 ------------------------------------------------------------ consensus_9714#0 GAGGAGTTGGTGGTGGACGAAGCGTCGTCGACGTGGTCGTGGACGAAGCTCGTGGGCCGT 300 consensus_9714#1 ------------------------------------------------------------ consensus_9714#0 CTCCTCGGAGTGGTCGGAGGCGGGGCGCCGTCCAACTCCGTGGCCGCGCAGCCGAAGAAG 360 consensus_9714#1 ------------------------------------------------------------ consensus_9714#0 AAGAAGGACAAGACGGTGCGCGCGCCGGAGCCGTACAACCTCTACGAGCAGGGCACCGGC 420 consensus_9714#1 ------------------------------------------------------------ consensus_9714#0 TTCCGCAACGCCTACGGATCCAGCGTCGCCGTCGACAAGCACGACTACGAGCCCCTCGGC 480 consensus_9714#1 --------------------------------------------------CTCTCTCTCT 10 * *** consensus_9714#0 CACTCCGACATCGGCGTCTATCTCGTCAACCTCACCGCCGGATCGATGATGGCGCCGCAC 540 consensus_9714#1 CTCTCTCTCTCTCTCTCTCTCTCCGTCAACCTCACCGCCGGATCGATGATGGCGCCGCAC 70 * *** * * ************************************* consensus_9714#0 GTGA-ACCCGAGGGCGACGGAGTACGGCGTCGTGCTCAGCGGGACGGGCTGCATCGAGGT 599 consensus_9714#1 GTGACACCCGAGGGCGACGGAGTACGGCGTCGTGCTCAGCGGGACGGGCTGCATCGAGGT 130 **** ******************************************************* consensus_9714#0 CGTGTTCCCGAACGGGTCGAAGGCGATGAGCGCGACGGTGCGCGCCGGCGACGTGTTCTA 659 consensus_9714#1 CGTGTCCCCGAACGGGTCGAAGGCGATGAGCGCGACGGTGCGCGCCGGCGACGTGTACTA 190 ***** ************************************************** *** consensus_9714#0 CAT-CCCGCGCTACTTCCCGTT-CTGCCAGGTGGCGTCGCGGG-CGGCCCGTTCGTGTTC 716 consensus_9714#1 CATGCCCGCGCTACTGCCCGTTGCTGCCAGGTGGCGTCCCGGGGCGGGCCGTTCGTGTCC 250 *** *********** ****** *************** **** *** ********** * consensus_9714#0 TTCGGGTTCACGACGTCGGCGCGGC--GGAACCACCCTCAGTTCCTCGTCGGCGGCTCCT 774 consensus_9714#1 TGCGGGTCCACGACGTCGGCGCGGTCTGGAACCACCCTCAGTGCCTCGTCGGCGGCTCCT 310 * ***** **************** *************** ***************** consensus_9714#0 CCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGG 834 consensus_9714#1 CCGTGCTCCGCGCCCTGCTCGGGACGGAGCTCGCCGCCGCGTTCGGCGTCCCGGAGAAGG 370 ************************************************************ consensus_9714#0 CGATGAGGAAGCTGGTGCTGGCGCAGAATGAGGCGGTGATCCTGCCGTCCTGGCCGGAGA 894 consensus_9714#1 CCATGAGGAA-CTGGTGCTGGCCCAGA-TGAGCCG-TGATTCTGGCCGTCTGGCCGAAAA 427 * ******** *********** **** **** ** **** *** * ******* * * consensus_9714#0 AGAAGAAGAAGAAGAAGTGGGAGGAGGAGCCCGAGGACGAGAGGTGGGAGGAGAAGAAGA 954 consensus_9714#1 NTAAAAGCAG-----AGTGGGAGAGA---CCC---------AGACAAGTGGAGAANAAAA 470 ** * * ******** *** ** * ****** ** * consensus_9714#0 AGGCGGCGAAGCAGAGGAAGCCATGGGTTATCGAGCAGGTGCCGGCGAAGTAGTAACTAA 1014 consensus_9714#1 GCCCG------CAGCAAGAACCATGGGTTATCAC---NGTGCCGCGAGTATACGAGCCCG 521 ** *** * ************ ****** ** * * consensus_9714#0 GCCCGCGTAAGCTAGCTGCTTAACTCTGATTAAGCATGTGAGCTATCTATCAATCCATGC 1074 consensus_9714#1 GTTAGCAACNGCTAATNGATGCACCTTGACCTTTTAAGCCGG------------------ 563 * ** **** * * ** *** * * * consensus_9714#0 TTAGGTATGCAGCTGGTTAACTTTGTTTTGCTGTCCAACTTTTGTAACCATGGGCGTGTC 1134 consensus_9714#1 ------------------------------------------------------------ consensus_9714#0 TGCTCAACTTATGTTTGCGCTCTTCGTGTTGCTTCGGCGTCGCGTTAATAAATAAAGATG 1194 consensus_9714#1 ------------------------------------------------------------ consensus_9714#0 CTTCTGCTTTTAAAAAAAAAA 1215 consensus_9714#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||