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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence
[CGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCGACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGACCGTTGCAACTGTCTGCGTATTTCTTGCTTCGAAGATTGAAGACACACCTTGCCCATTACAACGTGTCATCATTGTGGCATATGAAACCATGTACCGGAAAGACTGTAACGCTGCTCACAGAATCTACCAGAAGGAAGTTCTTGAGAAGCAGAAAGAGCTCATTTTGGTAGGGGAGACGCTGTTGCTTTCAACAATTAGGTTTGATTTCAACATACAGCATCCTTACGAGCCACTAAAGCTCGCTCTCAAGAAGCTGGGCATTTTCCAGATGGAAGTGAAACAAGTTGCGGTGAATCTAATAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATAGCAGCAGGGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGAAAAGTATGGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAAATGACAGAGCTATTTATGGGAAGANACCCATGCTCCATGGGTCCTGCCATCAGGCCACCGCCAACTCCAAGTCTGATGGAGAGACAGCAGGTGATCAGGCCACCACCAACTCCAACTCTGATGGAGNNNCAGCCGATAATCAGGCCACTGCCAACTCCAACTCTGATGGNNNNTNNNNACATAACACACTCTTTGGGCGCTGTNANNNNNNNTAN]
[+] EMBL CB677488 [CGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCGACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGACCGTTGCAACTGTCTGCGTATTTCTTGCTTCGAAGATTGAAGACACACCTTGCCCATTACAACGTGTCATCATTGTGGCATATGAAACCATGTACCGGAAAGACTGTAACGCTGCTCACAGAATCTACCAGAAGGAAGTTCTTGAGAAGCAGAAAGAGCTCATTTTGGTAGGGGAGACGCTGTTGCTTTCAACAATTAGGTTTGATTTCAACATACAGCATCCTTACGAGCCACTAAAGCTCGCTCTCAAGAAGCTGGGCATTTTCCAGATGGAAGTGAAACAAGTTGCGGTGAATCTAATAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATAGCAGCAGGGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGAAAAGTATGGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAAATGACAGAGCTATTTATGGGAAGANACCCATGCTCCATGGGTCCTGCCA ]
[+] EMBL CF195870 [ TGGAAGTGAAACAAGTTGCGGTGAATCTAATAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATAGCAGCAGGGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGAAAAGTATGGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAAATGACAGAGCTATTTATGGGAAGAAACCCATGCTCCATGGGTCCTGCCATCAGGCCACCGCCAACTCCAAGTCTGATGGAGAGACAGCAGGTGATCAGGCCACCACCAACTCCAACTCTGATGGAGNNNCAGCCGATAATCAGGCCACTGCCAACTCCAACTCTGATGGNNNNTNNNNACATAACACACTCTTTGGGCGCTGTNANNNNNNNTAN]
consensusID : consensus_9717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 445 fasta sequence
[GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCA-CGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCG-CCAAGGAGGCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGGTGCCTCAGGTGACAATCGCGACGGCAACCTTGCTC-TGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGA-TGCGCACA-TTTG-TTTGCCCA-CTAGTTGTGGCACTATCCAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACA-CTGATAATTAAAGCTAATCTGCCATTGCCAACAGCGAGTGACCCAACGCTTTTGCATCACAAAATCAGTGGTCCCATTTCATCCGTTAAAAAAAAAA]
[+] EMBL OSS12042A [GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCA CGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGNCGTGGGCGCCG CCAAGNAGGCCGAGCTCCGGGCGACCTATTGCTCCTTCATCCGCGACGTCGNNCTCAGGCTGCAGGTGCCTCAGGTGACAATNGNGACGGCAACCTTGCTC TGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGGTAAAAAAAANATGCAGTTCTTCAGATACGGA TGCGCACA TTTG TTTGNCCA CTAGTTGTGGCACTATCCAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACA CTGATA ]
[+] EMBL OSS12014A [GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCA CGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCG CCAAGGAGGCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGTTGCCTCAGGTGACAATCGCGACGGCAACCTTGCTCTTGCCATCGCTTTTATCTCCGACAGTCTCACGNCAAGAACGAGTGGCAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGATTGCGCACA TTTGTTTTGCCCA CTAGTTGTGG ANTATTCAATGTTGAAAATCTTCCTCTTAGGTTATAGTGAC ]
[+] EMBL OSS11970A [GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCA CGAGNGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCC CCAAGGAGGCCGAACTCCGGGCGACCTACTGCTCCTTCATCCGCNACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCNACNGCAACCTTGCTC TNNCATCGNTTTTATCTCCGACAGTNTCACGCCAAGAACGAGTGGCAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGA TGCGCACA TTTG TTTGCCCA CTAGTTGTGGCACTATCCAATGTTGAAA ]
[+] EMBL BI798817 [ TACGTCACCGAGGGATGAGGTCGAGAGGGGTTCCCCGTCGAGGAGGGACGGCGTCGGCCCCGCCCAAGGA GCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAG CT GTGACCATCGCGACGGCAACCTTGCTC TGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGA TGCGCACACTTTG TTTGCCCACCTAGTTGTGGCACTATCCAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACACCTGATAATTAAAGCTAATCTGCCATTGCCAACAGCGAGTGACCCAACGCTTTTGCATCACAAAATCAGTGGTCCCATTTCATCCGTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9717#0 ----CGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGG 56
consensus_9717#1 GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGG 60
********************************************************
consensus_9717#0 GGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACC 116
consensus_9717#1 GGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACC 120
************************************************************
consensus_9717#0 TACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCG 176
consensus_9717#1 TACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGGTGCCTCAGGTGACAATCGCG 180
*************************************** ********************
consensus_9717#0 ACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGG 236
consensus_9717#1 ACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGG 240
************************************************************
consensus_9717#0 CAGACCGTTGCAACTGTCTGCGTATTTCTTGCTTCGAAGATTGAAGACACAC-CTTGCCC 295
consensus_9717#1 CAG---GTAAAAAAAAAATGCAGTTCTTCAGATACGGA---TGCGCACATTTGTTTGCCC 294
*** ** ** *** * * * * ** * ** *** ******
consensus_9717#0 ATTACAACGTGTCATCATTGTGGCATATGAAACCATGTACCGGAAAGACTGTAACGCTGC 355
consensus_9717#1 ACTA-GTTGTGGCACTATC-CAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACACTGA 352
* ** *** ** ** * *** * * * * * ** ** ***
consensus_9717#0 TCACAGAATCTACCAGAAGGAAGTTCTTGAGAAGCAGAAAGAGCTCATTTTGGTAGGGGA 415
consensus_9717#1 TAATTAAAGCTAATCTGCCATTGCCAACAGCGAGT-GACCCAACGCTTTTGCATCACAAA 411
* * ** *** * ** ** * * * *** * *
consensus_9717#0 GACGCTGTTGC--TTTCAACAATTAGGTTTGATTTCAACATACAGCATCCTTACGAGCCA 473
consensus_9717#1 ATCAGTGGTCCCATTTCATCCGTTAAAAAAAAAA-------------------------- 445
* ** * * ***** * *** *
consensus_9717#0 CTAAAGCTCGCTCTCAAGAAGCTGGGCATTTTCCAGATGGAAGTGAAACAAGTTGCGGTG 533
consensus_9717#1 ------------------------------------------------------------
consensus_9717#0 AATCTAATAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATA 593
consensus_9717#1 ------------------------------------------------------------
consensus_9717#0 GCAGCAGGGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGA 653
consensus_9717#1 ------------------------------------------------------------
consensus_9717#0 AAAGTATGGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAA 713
consensus_9717#1 ------------------------------------------------------------
consensus_9717#0 ATGACAGAGCTATTTATGGGAAGANACCCATGCTCCATGGGTCCTGCCATCAGGCCACCG 773
consensus_9717#1 ------------------------------------------------------------
consensus_9717#0 CCAACTCCAAGTCTGATGGAGAGACAGCAGGTGATCAGGCCACCACCAACTCCAACTCTG 833
consensus_9717#1 ------------------------------------------------------------
consensus_9717#0 ATGGAGNNNCAGCCGATAATCAGGCCACTGCCAACTCCAACTCTGATGGNNNNTNNNNAC 893
consensus_9717#1 ------------------------------------------------------------
consensus_9717#0 ATAACACACTCTTTGGGCGCTGTNANNNNNNNTAN 928
consensus_9717#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||