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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9727#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1674 fasta sequence
[TGGTGACACGAGCCGTGGCCACCTGAAAAACACACTCCGCCCGCGCCGCACCTCCTCGTTGATGGATTTCAGCGTCCGAGCTCGCATCCAGAGCCCGCACCGGTCGGCCGCCCACTTCGTCGCCGGCGAGGGGGGACGCCGCCGCCCGGCAACGTCCAGGGTATCCTTCCGCTCCATGGCGTCGGCCGCTTCCGTGGAGGAGCCTGCCGCTGCTGCGGCGGCGGCGGCTGAGACGAAGAGGGGACCGAGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCCCATCCTGCCCTTCGAGGTGTTGTCCGCTCGGCTTGGGCGTAAACCAGAGGATATAATCAAGTTGGATGCAAATGAAAATCCATATGGTCCACCTCCGGAGGTAGCTAAAGCATTAGGAAATTTGAAGTTTCCCTATGTGTACCCTGATCCTGAAAGCCGTCAGTTGCGTGCTGCTCTTGCTGAAGATTCTGGTCTTGAATCTGAGTACATACTTGCTGGATGTGGTGCAGATGAATTAATTGATTTAATAATGAGATGTGTACTCGAACCAGGTGACAAAATTGTTGATTGCCCTCCAACTTTTACGATGTATGAGTTTGATGCGTCAGTCAATGGTGCACTTGTGATCAAGGTACCGAGACTTCCTGATTTTTCTCTAGACGTTGCACAGATTGTCAAAGTGGTTGAACAGGAAAAGCCAAAATCCATATTTCTGACATCTCCGAACAACCCAGATGGCAGCATAATCAATGATGAGGATCTTTTAAAGATCCTTGATCTTCCAATACTTGTAGTGCTGGATGAAGCATATATTGAGTTTTCGAGTCTTCAAACAAGGATGTCATGGGTTAAGAAGCATGATAATTTGATTGTTCTTCGGACATTTAGCAAACGAGCAGGTTTAGCTGGACTTCGTGTGGGTTACGGAGCATTTCCTCTAAGCATAATCGAGTATTTATGGAGGGCTAAGCAGCCCTATAATGTTTCTGTAGCAGCAGAAGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAGGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCA-TTCCTAAAGCCATTTCCCAGCCACTCTAAC-TTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAACTAAAGGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCTGAAAGCACTTCAACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCGTGGTAGTGCACTAGATGCAGTCTCTCAATGGAGGTTGCATCAATCTAACACAAATAAGGTGCATCCTCTAGGGTCGATTATGTCTCAATAATACACTCTTCTGTTTTGACCAGTGGCGTTTTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTCGAAGCAAGAATTTGTACTGCCGTGCCCTGATTGGAATAAATATGAGCGTAAAAGTATGGCAAGTCTACTGGCTAGATTGTTTATGCCCCTTCTTTTTAAAAAATAAAAATAAAAATCTTC]
[+] EMBL AK058999 [TGGTGACACGAGCCGTGGCCACCTGAAAAACACACTCCGCCCGCGCCGCACCTCCTCGTTGATGGATTTCAGCGTCCGAGCTCGCATCCAGAGCCCGCACCGGTCGGCCGCCCACTTCGTCGCCGGCGAGGGGGGACGCCGCCGCCCGGCAACGTCCAGGGTATCCTTCCGCTCCATGGCGTCGGCCGCTTCCGTGGAGGAGCCTGCCGCTGCTGCGGCGGCGGCGGCTGAGACGAAGAGGGGACCGAGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCCCATCCTGCCCTTCGAGGTGTTGTCCGCTCGGCTTGGGCGTAAACCAGAGGATATAATCAAGTTGGATGCAAATGAAAATCCATATGGTCCACCTCCGGAGGTAGCTAAAGCATTAGGAAATTTGAAGTTTCCCTATGTGTACCCTGATCCTGAAAGCCGTCAGTTGCGTGCTGCTCTTGCTGAAGATTCTGGTCTTGAATCTGAGTACATACTTGCTGGATGTGGTGCAGATGAATTAATTGATTTAATAATGAGATGTGTACTCGAACCAGGTGACAAAATTGTTGATTGCCCTCCAACTTTTACGATGTATGAGTTTGATGCGTCAGTCAATGGTGCACTTGTGATCAAGGTACCGAGACTTCCTGATTTTTCTCTAGACGTTGCACAGATTGTCAAAGTGGTTGAACAGGAAAAGCCAAAATCCATATTTCTGACATCTCCGAACAACCCAGATGGCAGCATAATCAATGATGAGGATCTTTTAAAGATCCTTGATCTTCCAATACTTGTAGTGCTGGATGAAGCATATATTGAGTTTTCGAGTCTTCAAACAAGGATGTCATGGGTTAAGAAGCATGATAATTTGATTGTTCTTCGGACATTTAGCAAACGAGCAGGTTTAGCTGGACTTCGTGTGGGTTACGGAGCATTTCCTCTAAGCATAATCGAGTATTTATGGAGGGCTAAGCAGCCCTATAATGTTTCTGTAGCAGCAGAAGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAGGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCA TTCCTAAAGCCATTTCCCAGCCACTCTAAC TTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAACTAAAGGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCTGAAAGCACTTCAACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCGTGGTAGTGCACTAGATGCAGTCTCTCAATGGAGGTTGCATCAATCTAACACAAATAAGGTGCATCCTCTAGGGTCGATTATGTCTCAATAATACACTCTTCTGTTTTGACCAGTGGCGTTTTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTCGAAGCAAGAATTTGTACTGCCGTGCCCTGATTGGAATAAATATGAGCGTAAAAGTA ]
[+] EMBL AK099074 [ ACGAGCCGTGGCCACCTGAAAAACACACTCCGCCCGCGCCGCACCTCCTCGTTGATGGATTTCAGCGTCCGAGCTCGCATCCAGAGCCCGCACCGGTCGGCCGCCCACTTCGTCGCCGGCGAGGGGGGACGCCGCCGCCCGGCAACGTCCAGGGTATCCTTCCGCTCCATGGCGTCGGCCGCTTCCGTGGAGGAGCCTGCCGCTGCTGCGGCGGCGGCGGCTGAGACGAAGAGGGGACCGAGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCCCATCCTGCCCTTCGAGGTGTTGTCCGCTCGGCTTGGGCGTAAACCAGAGGATATAATCAAGTTGGATGCAAATGAAAATCCATATGGTCCACCTCCGGAGGTAGCTAAAGCATTAGGAAATTTGAAGTTTCCCTATGTGTACCCTGATCCTGAAAGCCGTCAGTTGCGTGCTGCTCTTGCTGAAGATTCTGGTCTTGAATCTGAGTACATACTTGCTGGATGTGGTGCAGATGAATTAATTGATTTAATAATGAGATGTGTACTCGAACCAGGTGACAAAATTGTTGATTGCCCTCCAACTTTTACGATGTATGAGTTTGATGCGTCAGTCAATGGTGCACTTGTGATCAAGGTACCGAGACTTCCTGATTTTTCTCTAGACGTTGCACAGATTGTCAAAGTGGTTGAACAGGAAAAGCCAAAATCCATATTTCTGACATCTCCGAACAACCCAGATGGCAGCATAATCAATGATGAGGATCTTTTAAAGATCCTTGATCTTCCAATACTTGTAGTGCTGGATGAAGCATATATTGAGTTTTCGAGTCTTCAAACAAGGATGTCATGGGTTAAGAAGCATGATAATTTGATTGTTCTTCGGACATTTAGCAAACGAGCAGGTTTAGCTGGACTTCGTGTGGGTTACGGAGCATTTCCTCTAAGCATAATCGAGTATTTATGGAGGGCTAAGCAGCCCTATAATGTTTCTGTAGCAGCAGAAGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAGGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCA TTCCTAAAGCCATTTCCCAGCCACTCTAAC TTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAACTAAAGGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCTGAAAGCACTTCAACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCGTGGTAGTGCACTAGATGCAGTCTCTCAATGGAGGTTGCATCAATCTAACACAAATAAGGTGCATCCTCTAGGGTCGATTATGTCTCAATAATACACTCTTCTGTTTTGACCAGTGGCGTTTTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTCGAAGCAAGAATTTGTACTGCCGTGCCCTGATTGGAATAAATATGAGCGTA ]
[+] EMBL CB646909 [ AGCTCGCATCCAGAGCCCGCACCGGTCGGCCGCCCACTTCGTCGCCGGCGAGGGGGGACGCCGCCGCCCGGCAACGTCCAGGGTATCCTTCCGCTCCATGGCGTCGGCCGCTTCCGTGGAGGAGCCTGCCGCTGCTGCGGCGGCGGCGGCTGAGACGAAGAGGGGACCGAGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCCCATCCTGCCCTTCGAGGTGTTGTCCGCTCGGCTTGGGCGTAAACCAGAGGATATAATCAAGTTGGATGCAAATGAAAATCCATATGGTCCACCTCCGGAGGTAGCTAAAGCATTAGGAAATTTGAAGTTTCCCTATGTGTACCCTGATCCTGAAAGCCGTCAGTTGCGTGCTGCTCTTGCTGAAGATTCTGGTCTTGAATCTGAGTACATACTTGCTGGATGTGGTGCAGATGAATTAATTGATTTAATAATGAGATGTGTACTCGAACCAGGTGACAAAATTGTTGATTGCCCTCCAACTTTTACGATGTATGAGTTTGATGCGTCACTCAATGGTGCACTTGTGATCAAGGTACCGAGACTTCCTGATTTTTCTCTAGACGTTGCACAGATTGTCAAAGTGGTTGAACAGGAAAAGCCAAAATCCATATTTCTGACATCTCCGAACAACCCAGATGGCAGCATAATCAATGATGAGGATCTTTTAAAGATCCTTGATCTTCCAATACTTGTAGTGCTGGATGAAGCATATATTGAG ]
[-] EMBL CB646910 [ TCGAGTATTTATGGAGGGTTAAGCAGCCCTATAATGTTTCTGTAGCAGCAGAAGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAGGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCA TTCCTAAAGCCATTTCCCAGCCACTCTAAC TTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGGAAGCCCTTGCGAAGATGGGAGTAATGATCCGCCCCTATGCCAAGAAGGAACTAAAGGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCTGAAAGCACTTCAACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCGTGGTAGTGCACTAGATGCAGTCTCTCAATGGAGGTTGCATCAATTTAACACAAATAAGGTGCATCCTTTAGGGTCGATTATGTCTCAATAATACACTCTTCTGTTTTGACCAGTGGCGTTTTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTGGAAGCAAGAATTTGTACTGCCGTGCCCTGATTGGAATAAATATGAGCGTAAAAGTATGGCAAGTCTACTGGCTAGATTGTTTATGCCCCTTCTTTTTAAAAAATAAAAATAAAAATCTTC]
[+] EMBL BI801485 [ AATACCATTTCCTAAA CCATTTCCCAGCCACTCTAACTTTTATTCTCTGCGAGGTCACATCA GCAAAGATGCAAAGAAAATAAAGGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAACTAAAGGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCTGAAAGCACTTCAACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCGTGGTAGTGCACTAGAT CAGTCTCTCAATGGAGGTTGCATCAATCTAACAC AATAAGGTGCATCCTCTAGGGTCGATTATGTCTCAATAACACACTCTTCTGTTTTGACCAGTGGCGTTTTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTCGAAGCAAGAATTTGTACT CCGTGCCCTGATTGGAATAAATATGAGCGTAAAAGTATGGCAAGTCTAaaaaaa ]
consensusID : consensus_9727#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence
[AGGAGCCTGCCGCTGCTCGGCGTGAGACGAAGAGGGGACCAGGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCCCATCCTGCCCTTCGAGGTGTGTCCGTCTCGGCTTGGGCGTAAACAGAGGATATATCAAGTTGGATGCAAATGAAAATCCATATGGTCACTCAGAGTAGCTAAANATTAGG]
[+] EMBL D42321 [AGGAGCCTGCCGCTGCTCGGCGTGAGACGAAGAGGGGACCAGGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCCCATCCTGCCCTTCGAGGTGTGTCCGTCTCGGCTTGGGCGTAAACAGAGGATATATCAAGTTGGATGCAAATGAAAATCCATATGGTCACTCAGAGTAGCTAAANATTAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9727#0 TGGTGACACGAGCCGTGGCCACCTGAAAAACACACTCCGCCCGCGCCGCACCTCCTCGTT 60
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 GATGGATTTCAGCGTCCGAGCTCGCATCCAGAGCCCGCACCGGTCGGCCGCCCACTTCGT 120
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 CGCCGGCGAGGGGGGACGCCGCCGCCCGGCAACGTCCAGGGTATCCTTCCGCTCCATGGC 180
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 GTCGGCCGCTTCCGTGGAGGAGCCTGCCGCTGCTGCGGCGGCGGCGGCTGAGACGAAGAG 240
consensus_9727#1 -----------------AGGAGCCTGCCGCTGCT-------CGGCG--TGAGACGAAGAG 34
***************** ***** ************
consensus_9727#0 GGGACCGAGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCC 300
consensus_9727#1 GGGACCAGGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCC 94
****** ****************************************************
consensus_9727#0 CATCCTGCCCTTCGAGGTGTTGTCCGCTCGGCTTGGGCGTAAACCAGAGGATATAATCAA 360
consensus_9727#1 CATCCTGCCCTTCGAGGTGTGTCCGTCTCGGCTTGGGCGTAAAC-AGAGGATATA-TCAA 152
******************** * ****************** ********** ****
consensus_9727#0 GTTGGATGCAAATGAAAATCCATATGGTCCACCTCCGGAGGTAGCTAAAGCATTAGGAAA 420
consensus_9727#1 GTTGGATGCAAATGAAAATCCATATGGTCACTC----AGAGTAGCTAAAN-ATTAGG--- 204
***************************** * ********* ******
consensus_9727#0 TTTGAAGTTTCCCTATGTGTACCCTGATCCTGAAAGCCGTCAGTTGCGTGCTGCTCTTGC 480
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 TGAAGATTCTGGTCTTGAATCTGAGTACATACTTGCTGGATGTGGTGCAGATGAATTAAT 540
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 TGATTTAATAATGAGATGTGTACTCGAACCAGGTGACAAAATTGTTGATTGCCCTCCAAC 600
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 TTTTACGATGTATGAGTTTGATGCGTCAGTCAATGGTGCACTTGTGATCAAGGTACCGAG 660
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 ACTTCCTGATTTTTCTCTAGACGTTGCACAGATTGTCAAAGTGGTTGAACAGGAAAAGCC 720
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 AAAATCCATATTTCTGACATCTCCGAACAACCCAGATGGCAGCATAATCAATGATGAGGA 780
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 TCTTTTAAAGATCCTTGATCTTCCAATACTTGTAGTGCTGGATGAAGCATATATTGAGTT 840
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 TTCGAGTCTTCAAACAAGGATGTCATGGGTTAAGAAGCATGATAATTTGATTGTTCTTCG 900
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 GACATTTAGCAAACGAGCAGGTTTAGCTGGACTTCGTGTGGGTTACGGAGCATTTCCTCT 960
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 AAGCATAATCGAGTATTTATGGAGGGCTAAGCAGCCCTATAATGTTTCTGTAGCAGCAGA 1020
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 AGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAGGAAGTGAAAAATCTGCT 1080
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 ACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCATTCCTAAAGCCATT 1140
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 TCCCAGCCACTCTAACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAAT 1200
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 AAAGGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAACTAAA 1260
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 GGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCT 1320
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 GAAAGCACTTCAACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCG 1380
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 TGGTAGTGCACTAGATGCAGTCTCTCAATGGAGGTTGCATCAATCTAACACAAATAAGGT 1440
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 GCATCCTCTAGGGTCGATTATGTCTCAATAATACACTCTTCTGTTTTGACCAGTGGCGTT 1500
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 TTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTCGAAGCA 1560
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 AGAATTTGTACTGCCGTGCCCTGATTGGAATAAATATGAGCGTAAAAGTATGGCAAGTCT 1620
consensus_9727#1 ------------------------------------------------------------
consensus_9727#0 ACTGGCTAGATTGTTTATGCCCCTTCTTTTTAAAAAATAAAAATAAAAATCTTC 1674
consensus_9727#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||