These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9727#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1674 fasta sequence [TGGTGACACGAGCCGTGGCCACCTGAAAAACACACTCCGCCCGCGCCGCACCTCCTCGTTGATGGATTTCAGCGTCCGAGCTCGCATCCAGAGCCCGCACCGGTCGGCCGCCCACTTCGTCGCCGGCGAGGGGGGACGCCGCCGCCCGGCAACGTCCAGGGTATCCTTCCGCTCCATGGCGTCGGCCGCTTCCGTGGAGGAGCCTGCCGCTGCTGCGGCGGCGGCGGCTGAGACGAAGAGGGGACCGAGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCCCATCCTGCCCTTCGAGGTGTTGTCCGCTCGGCTTGGGCGTAAACCAGAGGATATAATCAAGTTGGATGCAAATGAAAATCCATATGGTCCACCTCCGGAGGTAGCTAAAGCATTAGGAAATTTGAAGTTTCCCTATGTGTACCCTGATCCTGAAAGCCGTCAGTTGCGTGCTGCTCTTGCTGAAGATTCTGGTCTTGAATCTGAGTACATACTTGCTGGATGTGGTGCAGATGAATTAATTGATTTAATAATGAGATGTGTACTCGAACCAGGTGACAAAATTGTTGATTGCCCTCCAACTTTTACGATGTATGAGTTTGATGCGTCAGTCAATGGTGCACTTGTGATCAAGGTACCGAGACTTCCTGATTTTTCTCTAGACGTTGCACAGATTGTCAAAGTGGTTGAACAGGAAAAGCCAAAATCCATATTTCTGACATCTCCGAACAACCCAGATGGCAGCATAATCAATGATGAGGATCTTTTAAAGATCCTTGATCTTCCAATACTTGTAGTGCTGGATGAAGCATATATTGAGTTTTCGAGTCTTCAAACAAGGATGTCATGGGTTAAGAAGCATGATAATTTGATTGTTCTTCGGACATTTAGCAAACGAGCAGGTTTAGCTGGACTTCGTGTGGGTTACGGAGCATTTCCTCTAAGCATAATCGAGTATTTATGGAGGGCTAAGCAGCCCTATAATGTTTCTGTAGCAGCAGAAGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAGGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCA-TTCCTAAAGCCATTTCCCAGCCACTCTAAC-TTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAACTAAAGGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCTGAAAGCACTTCAACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCGTGGTAGTGCACTAGATGCAGTCTCTCAATGGAGGTTGCATCAATCTAACACAAATAAGGTGCATCCTCTAGGGTCGATTATGTCTCAATAATACACTCTTCTGTTTTGACCAGTGGCGTTTTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTCGAAGCAAGAATTTGTACTGCCGTGCCCTGATTGGAATAAATATGAGCGTAAAAGTATGGCAAGTCTACTGGCTAGATTGTTTATGCCCCTTCTTTTTAAAAAATAAAAATAAAAATCTTC] [+] EMBL AK058999 [TGGTGACACGAGCCGTGGCCACCTGAAAAACACACTCCGCCCGCGCCGCACCTCCTCGTTGATGGATTTCAGCGTCCGAGCTCGCATCCAGAGCCCGCACCGGTCGGCCGCCCACTTCGTCGCCGGCGAGGGGGGACGCCGCCGCCCGGCAACGTCCAGGGTATCCTTCCGCTCCATGGCGTCGGCCGCTTCCGTGGAGGAGCCTGCCGCTGCTGCGGCGGCGGCGGCTGAGACGAAGAGGGGACCGAGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCCCATCCTGCCCTTCGAGGTGTTGTCCGCTCGGCTTGGGCGTAAACCAGAGGATATAATCAAGTTGGATGCAAATGAAAATCCATATGGTCCACCTCCGGAGGTAGCTAAAGCATTAGGAAATTTGAAGTTTCCCTATGTGTACCCTGATCCTGAAAGCCGTCAGTTGCGTGCTGCTCTTGCTGAAGATTCTGGTCTTGAATCTGAGTACATACTTGCTGGATGTGGTGCAGATGAATTAATTGATTTAATAATGAGATGTGTACTCGAACCAGGTGACAAAATTGTTGATTGCCCTCCAACTTTTACGATGTATGAGTTTGATGCGTCAGTCAATGGTGCACTTGTGATCAAGGTACCGAGACTTCCTGATTTTTCTCTAGACGTTGCACAGATTGTCAAAGTGGTTGAACAGGAAAAGCCAAAATCCATATTTCTGACATCTCCGAACAACCCAGATGGCAGCATAATCAATGATGAGGATCTTTTAAAGATCCTTGATCTTCCAATACTTGTAGTGCTGGATGAAGCATATATTGAGTTTTCGAGTCTTCAAACAAGGATGTCATGGGTTAAGAAGCATGATAATTTGATTGTTCTTCGGACATTTAGCAAACGAGCAGGTTTAGCTGGACTTCGTGTGGGTTACGGAGCATTTCCTCTAAGCATAATCGAGTATTTATGGAGGGCTAAGCAGCCCTATAATGTTTCTGTAGCAGCAGAAGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAGGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCA TTCCTAAAGCCATTTCCCAGCCACTCTAAC TTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAACTAAAGGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCTGAAAGCACTTCAACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCGTGGTAGTGCACTAGATGCAGTCTCTCAATGGAGGTTGCATCAATCTAACACAAATAAGGTGCATCCTCTAGGGTCGATTATGTCTCAATAATACACTCTTCTGTTTTGACCAGTGGCGTTTTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTCGAAGCAAGAATTTGTACTGCCGTGCCCTGATTGGAATAAATATGAGCGTAAAAGTA ] [+] EMBL AK099074 [ ACGAGCCGTGGCCACCTGAAAAACACACTCCGCCCGCGCCGCACCTCCTCGTTGATGGATTTCAGCGTCCGAGCTCGCATCCAGAGCCCGCACCGGTCGGCCGCCCACTTCGTCGCCGGCGAGGGGGGACGCCGCCGCCCGGCAACGTCCAGGGTATCCTTCCGCTCCATGGCGTCGGCCGCTTCCGTGGAGGAGCCTGCCGCTGCTGCGGCGGCGGCGGCTGAGACGAAGAGGGGACCGAGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCCCATCCTGCCCTTCGAGGTGTTGTCCGCTCGGCTTGGGCGTAAACCAGAGGATATAATCAAGTTGGATGCAAATGAAAATCCATATGGTCCACCTCCGGAGGTAGCTAAAGCATTAGGAAATTTGAAGTTTCCCTATGTGTACCCTGATCCTGAAAGCCGTCAGTTGCGTGCTGCTCTTGCTGAAGATTCTGGTCTTGAATCTGAGTACATACTTGCTGGATGTGGTGCAGATGAATTAATTGATTTAATAATGAGATGTGTACTCGAACCAGGTGACAAAATTGTTGATTGCCCTCCAACTTTTACGATGTATGAGTTTGATGCGTCAGTCAATGGTGCACTTGTGATCAAGGTACCGAGACTTCCTGATTTTTCTCTAGACGTTGCACAGATTGTCAAAGTGGTTGAACAGGAAAAGCCAAAATCCATATTTCTGACATCTCCGAACAACCCAGATGGCAGCATAATCAATGATGAGGATCTTTTAAAGATCCTTGATCTTCCAATACTTGTAGTGCTGGATGAAGCATATATTGAGTTTTCGAGTCTTCAAACAAGGATGTCATGGGTTAAGAAGCATGATAATTTGATTGTTCTTCGGACATTTAGCAAACGAGCAGGTTTAGCTGGACTTCGTGTGGGTTACGGAGCATTTCCTCTAAGCATAATCGAGTATTTATGGAGGGCTAAGCAGCCCTATAATGTTTCTGTAGCAGCAGAAGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAGGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCA TTCCTAAAGCCATTTCCCAGCCACTCTAAC TTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAACTAAAGGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCTGAAAGCACTTCAACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCGTGGTAGTGCACTAGATGCAGTCTCTCAATGGAGGTTGCATCAATCTAACACAAATAAGGTGCATCCTCTAGGGTCGATTATGTCTCAATAATACACTCTTCTGTTTTGACCAGTGGCGTTTTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTCGAAGCAAGAATTTGTACTGCCGTGCCCTGATTGGAATAAATATGAGCGTA ] [+] EMBL CB646909 [ AGCTCGCATCCAGAGCCCGCACCGGTCGGCCGCCCACTTCGTCGCCGGCGAGGGGGGACGCCGCCGCCCGGCAACGTCCAGGGTATCCTTCCGCTCCATGGCGTCGGCCGCTTCCGTGGAGGAGCCTGCCGCTGCTGCGGCGGCGGCGGCTGAGACGAAGAGGGGACCGAGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCCCATCCTGCCCTTCGAGGTGTTGTCCGCTCGGCTTGGGCGTAAACCAGAGGATATAATCAAGTTGGATGCAAATGAAAATCCATATGGTCCACCTCCGGAGGTAGCTAAAGCATTAGGAAATTTGAAGTTTCCCTATGTGTACCCTGATCCTGAAAGCCGTCAGTTGCGTGCTGCTCTTGCTGAAGATTCTGGTCTTGAATCTGAGTACATACTTGCTGGATGTGGTGCAGATGAATTAATTGATTTAATAATGAGATGTGTACTCGAACCAGGTGACAAAATTGTTGATTGCCCTCCAACTTTTACGATGTATGAGTTTGATGCGTCACTCAATGGTGCACTTGTGATCAAGGTACCGAGACTTCCTGATTTTTCTCTAGACGTTGCACAGATTGTCAAAGTGGTTGAACAGGAAAAGCCAAAATCCATATTTCTGACATCTCCGAACAACCCAGATGGCAGCATAATCAATGATGAGGATCTTTTAAAGATCCTTGATCTTCCAATACTTGTAGTGCTGGATGAAGCATATATTGAG ] [-] EMBL CB646910 [ TCGAGTATTTATGGAGGGTTAAGCAGCCCTATAATGTTTCTGTAGCAGCAGAAGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAGGAAGTGAAAAATCTGCTACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCA TTCCTAAAGCCATTTCCCAGCCACTCTAAC TTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAATAAAGGAAGCCCTTGCGAAGATGGGAGTAATGATCCGCCCCTATGCCAAGAAGGAACTAAAGGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCTGAAAGCACTTCAACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCGTGGTAGTGCACTAGATGCAGTCTCTCAATGGAGGTTGCATCAATTTAACACAAATAAGGTGCATCCTTTAGGGTCGATTATGTCTCAATAATACACTCTTCTGTTTTGACCAGTGGCGTTTTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTGGAAGCAAGAATTTGTACTGCCGTGCCCTGATTGGAATAAATATGAGCGTAAAAGTATGGCAAGTCTACTGGCTAGATTGTTTATGCCCCTTCTTTTTAAAAAATAAAAATAAAAATCTTC] [+] EMBL BI801485 [ AATACCATTTCCTAAA CCATTTCCCAGCCACTCTAACTTTTATTCTCTGCGAGGTCACATCA GCAAAGATGCAAAGAAAATAAAGGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAACTAAAGGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCTGAAAGCACTTCAACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCGTGGTAGTGCACTAGAT CAGTCTCTCAATGGAGGTTGCATCAATCTAACAC AATAAGGTGCATCCTCTAGGGTCGATTATGTCTCAATAACACACTCTTCTGTTTTGACCAGTGGCGTTTTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTCGAAGCAAGAATTTGTACT CCGTGCCCTGATTGGAATAAATATGAGCGTAAAAGTATGGCAAGTCTAaaaaaa ] consensusID : consensus_9727#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [AGGAGCCTGCCGCTGCTCGGCGTGAGACGAAGAGGGGACCAGGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCCCATCCTGCCCTTCGAGGTGTGTCCGTCTCGGCTTGGGCGTAAACAGAGGATATATCAAGTTGGATGCAAATGAAAATCCATATGGTCACTCAGAGTAGCTAAANATTAGG] [+] EMBL D42321 [AGGAGCCTGCCGCTGCTCGGCGTGAGACGAAGAGGGGACCAGGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCCCATCCTGCCCTTCGAGGTGTGTCCGTCTCGGCTTGGGCGTAAACAGAGGATATATCAAGTTGGATGCAAATGAAAATCCATATGGTCACTCAGAGTAGCTAAANATTAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9727#0 TGGTGACACGAGCCGTGGCCACCTGAAAAACACACTCCGCCCGCGCCGCACCTCCTCGTT 60 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 GATGGATTTCAGCGTCCGAGCTCGCATCCAGAGCCCGCACCGGTCGGCCGCCCACTTCGT 120 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 CGCCGGCGAGGGGGGACGCCGCCGCCCGGCAACGTCCAGGGTATCCTTCCGCTCCATGGC 180 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 GTCGGCCGCTTCCGTGGAGGAGCCTGCCGCTGCTGCGGCGGCGGCGGCTGAGACGAAGAG 240 consensus_9727#1 -----------------AGGAGCCTGCCGCTGCT-------CGGCG--TGAGACGAAGAG 34 ***************** ***** ************ consensus_9727#0 GGGACCGAGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCC 300 consensus_9727#1 GGGACCAGGCGGCGCCTCCTTCATCCGGGAACACCTCAGGAGTCTCGCCCCGTACCAGCC 94 ****** **************************************************** consensus_9727#0 CATCCTGCCCTTCGAGGTGTTGTCCGCTCGGCTTGGGCGTAAACCAGAGGATATAATCAA 360 consensus_9727#1 CATCCTGCCCTTCGAGGTGTGTCCGTCTCGGCTTGGGCGTAAAC-AGAGGATATA-TCAA 152 ******************** * ****************** ********** **** consensus_9727#0 GTTGGATGCAAATGAAAATCCATATGGTCCACCTCCGGAGGTAGCTAAAGCATTAGGAAA 420 consensus_9727#1 GTTGGATGCAAATGAAAATCCATATGGTCACTC----AGAGTAGCTAAAN-ATTAGG--- 204 ***************************** * ********* ****** consensus_9727#0 TTTGAAGTTTCCCTATGTGTACCCTGATCCTGAAAGCCGTCAGTTGCGTGCTGCTCTTGC 480 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 TGAAGATTCTGGTCTTGAATCTGAGTACATACTTGCTGGATGTGGTGCAGATGAATTAAT 540 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 TGATTTAATAATGAGATGTGTACTCGAACCAGGTGACAAAATTGTTGATTGCCCTCCAAC 600 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 TTTTACGATGTATGAGTTTGATGCGTCAGTCAATGGTGCACTTGTGATCAAGGTACCGAG 660 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 ACTTCCTGATTTTTCTCTAGACGTTGCACAGATTGTCAAAGTGGTTGAACAGGAAAAGCC 720 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 AAAATCCATATTTCTGACATCTCCGAACAACCCAGATGGCAGCATAATCAATGATGAGGA 780 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 TCTTTTAAAGATCCTTGATCTTCCAATACTTGTAGTGCTGGATGAAGCATATATTGAGTT 840 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 TTCGAGTCTTCAAACAAGGATGTCATGGGTTAAGAAGCATGATAATTTGATTGTTCTTCG 900 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 GACATTTAGCAAACGAGCAGGTTTAGCTGGACTTCGTGTGGGTTACGGAGCATTTCCTCT 960 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 AAGCATAATCGAGTATTTATGGAGGGCTAAGCAGCCCTATAATGTTTCTGTAGCAGCAGA 1020 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 AGTTTCAGCCTGTGCTGCCTTGCAGAACCCGACTTATTTAGAGGAAGTGAAAAATCTGCT 1080 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 ACTACAAGAGAGGGACAGGCTGTACGATCTTCTCAAAGAAATACCATTCCTAAAGCCATT 1140 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 TCCCAGCCACTCTAACTTTATTCTCTGCGAGGTCACATCAGGCAAAGATGCAAAGAAAAT 1200 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 AAAGGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAAGGAACTAAA 1260 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 GGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCT 1320 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 GAAAGCACTTCAACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCG 1380 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 TGGTAGTGCACTAGATGCAGTCTCTCAATGGAGGTTGCATCAATCTAACACAAATAAGGT 1440 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 GCATCCTCTAGGGTCGATTATGTCTCAATAATACACTCTTCTGTTTTGACCAGTGGCGTT 1500 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 TTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTCGAAGCA 1560 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 AGAATTTGTACTGCCGTGCCCTGATTGGAATAAATATGAGCGTAAAAGTATGGCAAGTCT 1620 consensus_9727#1 ------------------------------------------------------------ consensus_9727#0 ACTGGCTAGATTGTTTATGCCCCTTCTTTTTAAAAAATAAAAATAAAAATCTTC 1674 consensus_9727#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||