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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9730#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence
[CAGAGAGTTGAAGACTTTCACATGTTCAGAGTACAATATTGAGGAACGAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCTGCAACAAAATTTAAGCCATAAAGCAATGTTAATCATCACAGAGAAGACATCAGAGTAAAAAGAGTTAGTAGTACACTGCAAGAACTCTGCTAGTACTTCAGAAGCACAACCGTAAATTTCATCATCAGAATATATATCTAGTTTCATTGTAAGAAATGTACTACTACTGGTACCGCAGAAGCTTAATCATGCAATTGAAAAAAAAAGAACAGTTTTTTCCCAAATAAAGTTCTTGCTTTTTGAAGAGAAAAACAGAACTGTTCCTTGGCAATTGAATGATCCATTTTGTTTTCAGATTATCGTCAACCATAAACCCATCAGTTCTTAATACCTAGCTTAAGTGCTTAACCAGGCATGCACCAATGCGTTTCTCAACACTTCTAAAACACATATGAGGTAAAATGCAAGACAAAAATAAAACAAGAGAGTGGGAGGCAACAAGAAAAAAAAATCAGGGCATAATCAACATGCAAGCAAAAGCAACAAGAAGAGGAAGAAAGAACAAAAAAAGAAAACGAAATTCTGGTGAAAACAGCTAGTAGTAGCTAGAAAGCACTAAGAGTTTGTCAGCACTGAACAATTAAACCAACCCCAAACACAAATGAGGTAAAAATTAGAATGCAACCAAAAACAAAACATCCAAGCAAAGCAAAA]
[+] EMBL CB626880 [CAGAGAGTTGAAGACTTTCACATGTTCAGAGTACAATATTGAGGAACGAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCTGCAACAAAATTTAAGCCATAAAGCAATGTTAATCATCACAGAGAAGACATCAGAGTAAAAAGAGTTAGTAGTACACTGCAAGAACTCTGCTAGTACTTCAGAAGCACAACCGTAAATTTCATCATCAGAATATATATCTAGTTTCATTGTAAGAAATGTACTACTACTGGTACCGCAGAAGCTTAATCATGCAATTGAAAAAAAAAGAACAGTTTTTTCCCAAATAAAGTTCTTGCTTTTTGAAGAGAAAAACAGAACTGTTCCTTGGCAATTGAATGATCCATTTTGTTTTCAGATTATCGTCAACCATAAACCCATCAGTTCTTAATACCTAGCTTAAGTGCTTAACCAGGCATGCACCAATGCGTTTCTCAACACTTCTAAAACACATATGAGGTAAAATGCAAGACAAAAATAAAACAAGAGAGTGGGAGGCAACAAGAAAAAAAAATCAGGGCATAATCAACATGCAAGCAAAAGCAACAAGAAGAGGAAGAAAGAACAAAAAAAGAAAACGAAATTCTGGTGAAAACAGCTAGTAGTAGCTAGAAAGCACTAAGAGTTTGTCAGCACTGAACAATTAAACCAACCCCAAACACAAATGAGGTAAAAATTAGAATGCAACCAAAAACAAAACATCCAAGCAAAGCAAAA]
consensusID : consensus_9730#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 770 fasta sequence
[TTTTTTTTCCCAAATATGTACAACAGCTTAATTATTCGCACTGAAGGAAGATGTACATATGAAAACCCAGAGAGTTGAAGACTTTCAGATGTTCAGAGTACAATATTGAGGAAC-GAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGGCGGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGCGTTGTTCC-ACCGGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCGCCGCTGTACGCGCAC-GCCGTCGGCGGCTTGCAGCACCCCGACTATTATGGATACAATACAATTAATCATCTGGATTGGGGTGAGATCATGCTGGAGGTAATCCATGGGTGACCAATTGGCGATCTTGGGGCAAGCCTTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAGTATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCGCGGTAGGGGCGGCCGGGGACCTGGGTGCC]
[-] EMBL BQ908638 [TTTTTTTTCCCAAATATGTACAACAGCTTAATTATTCGCACTGAAGGAAGATGTACATATGAAAACCCAGAGAGTTGAAGACTTTCAGATGTTCAGAGTACAATATTGAGGAACTGAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGG GGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGCGTTGTTCCNACCGGAAGCAGTCCTCGTCCTGCGCTCCGACGGGCACCCCGCCGCTGTACGCGCACAGCCGTCGGCGGCTTGCAGAACC ]
[-] EMBL AK066098 [ AGAGTTGAAGACTTTCAGATGTTCAGAGTACAATATTGAGGAAC GAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGGCGGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGCGTTGTTCC ACCGGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCGCCGCTGTACGCGCAC GCCGTCGGCGGCTTGCAGCACCCCGACTATTATGGATACAATACAATTAATCATCTGGATTGGGGTGAGATCATGCTGGAGGTAATCCATGGGTGACCAATTGGCGATCTTGGGGCAAGCCTTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAGTATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCGCGGTAGGGGCGGCCGGGGACCTGGGTGCC]
[-] EMBL AK099070 [ AGAGTTGAAGACTTTCAGATGTTCAGAGTACAATATTGAGGAAC GAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGGCGGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGCGTTGTTCC ACCGGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCGCCGCTGTACGCGCAC GCCGTCGGCGGCTTGCAGCACCCCGACTATTATGGATACAATACAATTAATCATCTGGATTGGGGTGAGATCATGCTGGAGGTAATCCATGGGTGACCAATTGGCGATCTTGGGGCAAGCCTTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAGTATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCGCGGTAGGGGCGGCCGGGGACCTGGGTGCC]
[-] EMBL BI801735 [ ttTTGAGGAAC GAATCAACTCTCAACTATGTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGGCGGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGAATCGCACCCGTA ]
consensusID : consensus_9730#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence
[CTGCTGAGTGCTACTTTGCATTTCCCAAATATGTACAACAGCTTAATTATTCGCACTGAAGGAAGATGTACATATGAAAACCCAGAGAGTTGAAGACTTTCAGATGTTCAGAGTACAATATTGAGGAACGATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGGCGGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGCGTTGTTCCACCGGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCGCCGCTGTACGCGCACGCCGTCGGCGGCTTGCAGCACCCCGACTGGATTGGGGTGAGATCATGCTGGAGGTAATCCATGGGTGACCAATTGGCGATCTTGGGGCAAGCCTTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAGTATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCGCGGTAGGGGCGGCCGGGGACCTGGGTGCC]
[-] EMBL AK059541 [CTGCTGAGTGCTACTTTGCATTTCCCAAATATGTACAACAGCTTAATTATTCGCACTGAAGGAAGATGTACATATGAAAACCCAGAGAGTTGAAGACTTTCAGATGTTCAGAGTACAATATTGAGGAACGATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATACAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATCGCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGTACTCGGAGACGGAGCGGCGGGCGTTCCTGAAGGCGCAGCAGCCGCAGGCGCAGATGCAGATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCACCTTCTCCATCACCCCGGCCCTGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGCGTTGTTCCACCGGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCGCCGCTGTACGCGCACGCCGTCGGCGGCTTGCAGCACCCCGACTGGATTGGGGTGAGATCATGCTGGAGGTAATCCATGGGTGACCAATTGGCGATCTTGGGGCAAGCCTTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAGTATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCGCGGTAGGGGCGGCCGGGGACCTGGGTGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9730#1 ---------------TTTTTTTTCCCAAATATGTACAACAGCTTAATTATTCGCACTGAA 45
consensus_9730#2 CTGCTGAGTGCTACTTTGCATTTCCCAAATATGTACAACAGCTTAATTATTCGCACTGAA 60
consensus_9730#0 ------------------------------------------------------------
consensus_9730#1 GGAAGATGTACATATGAAAACCCAGAGAGTTGAAGACTTTCAGATGTTCAGAGTACAATA 105
consensus_9730#2 GGAAGATGTACATATGAAAACCCAGAGAGTTGAAGACTTTCAGATGTTCAGAGTACAATA 120
consensus_9730#0 ----------------------CAGAGAGTTGAAGACTTTCACATGTTCAGAGTACAATA 38
******************** *****************
consensus_9730#1 TTGAGGAACGAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATA 165
consensus_9730#2 TTGAGGAACGA-TCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATA 179
consensus_9730#0 TTGAGGAACGAATCAACTCTCAACTATTTTAATTTTCTTGGGCAAGATCAAAATATCATA 98
*********** ************************************************
consensus_9730#1 CAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATC 225
consensus_9730#2 CAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATC 239
consensus_9730#0 CAAGGGTAGAATACAAATAGCTAGCCTAGTAGAGCTGTTCTCTCCTATCACGCCACCATC 158
************************************************************
consensus_9730#1 GCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGT 285
consensus_9730#2 GCCACCAGTAGTAGTCCCATCGGGGGTGGATCTTGTGCATGCGGTTTACCCCGTAAGGGT 299
consensus_9730#0 GCCACCTGCAACAAAATT-TAAGCCATAAAGCA-----ATGTTAATCATCACAGAGAAGA 212
****** * * * * * * * * *** * * * * * *
consensus_9730#1 ACTCGGAG-ACGGAGCGGCGGGCGTTC-CTGAAGGCGCAGCAGCCGCAGGCGCAGATGCA 343
consensus_9730#2 ACTCGGAG-ACGGAGCGGCGGGCGTTC-CTGAAGGCGCAGCAGCCGCAGGCGCAGATGCA 357
consensus_9730#0 CATCAGAGTAAAAAGAGTTAGTAGTACACTGCAAGAACT-CTGCTAGTACTTCAGAAGCA 271
** *** * ** * * ** * *** * * * * ** **** ***
consensus_9730#1 GATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCAC 403
consensus_9730#2 GATGAGCACCACCAGCACCATGACGTTGAGCACCGAGATCTTGTGCCAATCCTCCCTCAC 417
consensus_9730#0 --CAACCGTAAATTTCATCATCAGAATATATATCTAGTTTCATTGTAAGAAATGTACTAC 329
* * * ** *** * * * * ** * ** * * **
consensus_9730#1 CTTCTCCATCACCCCGGCCC---TGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGC 460
consensus_9730#2 CTTCTCCATCACCCCGGCCC---TGCACGACTCGCACCCGTAGCACAGTATCCCCGCCGC 474
consensus_9730#0 TACTGGTACCGCAGAAGCTTAATCATGCAATTGAAAAAAAAAGAACAGTTTTTTCCCAAA 389
* * * ** * * * * ** ***** * * *
consensus_9730#1 ----GTTGTTCCACC--GGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCG-CCGC 513
consensus_9730#2 ----GTTGTTCCACC--GGAAGCAGTCCTCGTCCTGCGCTCCGACGGCCACCCCG-CCGC 527
consensus_9730#0 TAAAGTTCTTGCTTTTTGAAGAGAAAAACAGAACTGTTCCTTGGCAATTGAATGATCCAT 449
*** ** * * * * * *** * * * **
consensus_9730#1 TGTACGCGCACGCCGTCGGCGGCTTGCAGCACCCCGACTATTATGGATACAATACAATTA 573
consensus_9730#2 TGTACGCGCACGCCGTCGGCGGCTTGCAGCACCCCGACT--------------------- 566
consensus_9730#0 TTTGTTTTCAGATTATCGTCAACCATAAACCCATCAGTTCTTAATACCTAGCTTAAGTGC 509
* * ** *** * * * * * * *
consensus_9730#1 ATCATCTGGATTGGGGTGAGATCATGCTGGAGGT------AATCCATGGGTGACCAATTG 627
consensus_9730#2 -------GGATTGGGGTGAGATCATGCTGGAGGT------AATCCATGGGTGACCAATTG 613
consensus_9730#0 TTAACCAGGCATGCACCAATGCGTTTCTCAACACTTCTAAAACACATATGAGGTAAAATG 569
** ** * * ** * ** *** * * ** **
consensus_9730#1 ----GCGATCTTGGGGCAAGCC--TTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAG 681
consensus_9730#2 ----GCGATCTTGGGGCAAGCC--TTGGATCCAACGACGCATGCGAGCGCGGGGCGCCAG 667
consensus_9730#0 CAAGACAAAAATAAAACAAGAGAGTGGGAGGCAACAA-GAAAAAAAAATCAGGGCATAAT 628
* * * **** * *** **** * * * * * **** *
consensus_9730#1 TATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCG 741
consensus_9730#2 TATTTGGCGTCCTGGATGTGCTTCTGCAGCCAGGACGAGTAGTCGGAGGTGTGGTACTCG 727
consensus_9730#0 CAACATGCAAGCAAAAGCAACAAGAAGAGGAAGAAAGAACAAAAAAAGAAAACGAAATTC 688
* ** * * * ** ** * ** * ** * * *
consensus_9730#1 CGGTAGGGGCGGCCGG--GGACCTGGGTGCC----------------------------- 770
consensus_9730#2 CGGTAGGGGCGGCCGG--GGACCTGGGTGCC----------------------------- 756
consensus_9730#0 TGGTGAAAACAGCTAGTAGTAGCTAGAAAGCACTAAGAGTTTGTCAGCACTGAACAATTA 748
*** * ** * * * ** * *
consensus_9730#1 ------------------------------------------------------------
consensus_9730#2 ------------------------------------------------------------
consensus_9730#0 AACCAACCCCAAACACAAATGAGGTAAAAATTAGAATGCAACCAAAAACAAAACATCCAA 808
consensus_9730#1 -----------
consensus_9730#2 -----------
consensus_9730#0 GCAAAGCAAAA 819
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||