These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9734#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 873 fasta sequence [CCCACAAAGGCACAAACCGCGTCTCCCTCTCCCTCTCTCCGCCCATCCATCCTCCTAGAGAGGGAGCGCGCGCAAGGAGGAGGAACAAGGGCTCCTCGGATCGGGACCAGCTGAGGATTTGAACAAGTCAGCTTGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTTCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGC-AAC-AAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACTATCAAGTGTTAGTAGTGATTACCAAGAAATTTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC] [+] EMBL AK069687 [CCCACAAAGGCACAAACCGCGTCTCCCTCTCCCTCTCTCCGCCCATCCATCCTCCTAGAGAGGGAGCGCGCGCAAGGAGGAGGAACAAGGGCTCCTCGGATCGGGACCAGCTGAGGATTTGAACAAGTCAGCTTGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTTCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCTCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGC AAC AAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACTATCAAGTGTTAGT ] [-] EMBL CA763637 [ TCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCAATTCAATAGTTGC AAC AAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGT ATTCATTTGAAACTGCATGATACTATCAAGTGTTAGTAGTGGTTACCAAGAAATTTCACAAAAA ] [+] EMBL BI807351 [ GCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGC AAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTAC ATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGC AAC AATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTTTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGGTACTATCAAGTGTTAGTAGTGATTACCAAGAAAaaa ] [+] EMBL CA758113 [ CAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCAGACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGC AAC AAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTATTGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACTATCAAGTGTTAGTAGTGATTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC] [+] EMBL BI802412 [ TATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGCAAACAAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACTATCAAGTGTTAGTAGTGATTACCAAGAAATTTCACAAAAAA ] consensusID : consensus_9734#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [CGGGACCAGCTGAGGATTTGAACAAGTCAGCTNGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATAAAAAAAAGAAAAAAAAAA] [-] EMBL CA758990 [CGGGACCAGCTGAGGATTTGAACAAGTCAGCTNGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATAAAAAAAAGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9734#0 CCCACAAAGGCACAAACCGCGTCTCCCTCTCCCTCTCTCCGCCCATCCATCCTCCTAGAG 60 consensus_9734#1 ------------------------------------------------------------ consensus_9734#0 AGGGAGCGCGCGCAAGGAGGAGGAACAAGGGCTCCTCGGATCGGGACCAGCTGAGGATTT 120 consensus_9734#1 -----------------------------------------CGGGACCAGCTGAGGATTT 19 ******************* consensus_9734#0 GAACAAGTCAGCTTGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGT 180 consensus_9734#1 GAACAAGTCAGCTNGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGT 79 ************* ********************************************** consensus_9734#0 CACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTG 240 consensus_9734#1 CACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTG 139 ************************************************************ consensus_9734#0 GCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGG 300 consensus_9734#1 GCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGG 199 ************************************************************ consensus_9734#0 TCTTTCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCT 360 consensus_9734#1 TCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCT 259 **** ******************************************************* consensus_9734#0 CTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAA 420 consensus_9734#1 CTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAA 319 ************************************************************ consensus_9734#0 AATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTAC 480 consensus_9734#1 AATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTAC 379 ***************** ****************************************** consensus_9734#0 AATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTG 540 consensus_9734#1 AATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTG 439 ************************************************************ consensus_9734#0 GTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTT 600 consensus_9734#1 GTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTT 499 ************************************************************ consensus_9734#0 GCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGT 660 consensus_9734#1 GCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGT 559 ************************************************************ consensus_9734#0 CATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAG 720 consensus_9734#1 CATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAG 619 ************************************************************ consensus_9734#0 GAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACT 780 consensus_9734#1 GAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATAAA 679 ********************************************************** consensus_9734#0 ATCAAGTGTTAGTAGTGATTACCAAGAAATTTCACAAAAAAAAAAAAAAAAAAAAAAAAA 840 consensus_9734#1 AAAAAGAAAAAAAAAA-------------------------------------------- 695 * *** * * consensus_9734#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC 873 consensus_9734#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||