Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9734 cluster # 9734       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9734#0 length = 873 sequences # 5  
consensus_9734#1 length = 695 sequences # 1  

consensusID : consensus_9734#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 873
fasta sequence
                              [CCCACAAAGGCACAAACCGCGTCTCCCTCTCCCTCTCTCCGCCCATCCATCCTCCTAGAGAGGGAGCGCGCGCAAGGAGGAGGAACAAGGGCTCCTCGGATCGGGACCAGCTGAGGATTTGAACAAGTCAGCTTGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTTCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGC-AAC-AAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACTATCAAGTGTTAGTAGTGATTACCAAGAAATTTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC]

[+] EMBL AK069687             [CCCACAAAGGCACAAACCGCGTCTCCCTCTCCCTCTCTCCGCCCATCCATCCTCCTAGAGAGGGAGCGCGCGCAAGGAGGAGGAACAAGGGCTCCTCGGATCGGGACCAGCTGAGGATTTGAACAAGTCAGCTTGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTTCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCTCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGC AAC AAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACTATCAAGTGTTAGT                                                                                ]
[-] EMBL CA763637             [                                                                                                                                                           TCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCAATTCAATAGTTGC AAC AAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGT ATTCATTTGAAACTGCATGATACTATCAAGTGTTAGTAGTGGTTACCAAGAAATTTCACAAAAA                                                     ]
[+] EMBL BI807351             [                                                                                                                                                                                                                                                                                                                                                        GCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGC AAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTAC ATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGC AAC  AATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTTTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGGTACTATCAAGTGTTAGTAGTGATTACCAAGAAAaaa                                                             ]
[+] EMBL CA758113             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCAGACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGC AAC AAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTATTGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACTATCAAGTGTTAGTAGTGATTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC]
[+] EMBL BI802412             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGCAAACAAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACTATCAAGTGTTAGTAGTGATTACCAAGAAATTTCACAAAAAA                                                    ]


>consensus_9734#0 CCCACAAAGGCACAAACCGCGTCTCCCTCTCCCTCTCTCCGCCCATCCATCCTCCTAGAG AGGGAGCGCGCGCAAGGAGGAGGAACAAGGGCTCCTCGGATCGGGACCAGCTGAGGATTT GAACAAGTCAGCTTGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGT CACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTG GCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGG TCTTTCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCT CTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAA AATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTAC AATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTG GTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTT GCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGT CATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAG GAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACT ATCAAGTGTTAGTAGTGATTACCAAGAAATTTCACAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC



consensusID : consensus_9734#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence
                              [CGGGACCAGCTGAGGATTTGAACAAGTCAGCTNGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATAAAAAAAAGAAAAAAAAAA]

[-] EMBL CA758990             [CGGGACCAGCTGAGGATTTGAACAAGTCAGCTNGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATAAAAAAAAGAAAAAAAAAA]


>consensus_9734#1 CGGGACCAGCTGAGGATTTGAACAAGTCAGCTNGTCGCCACCATGGTTCTTGATTCATTA TCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAA TCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTG ACAACACTAGTGGTTCTGGTCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTG GGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAA TCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGA CCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACAT TGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGA GACCTGCTATTCAATAGTTGCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTG TAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATG CCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCA TTTGAAACTGCATGATAAAAAAAAGAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9734#0      CCCACAAAGGCACAAACCGCGTCTCCCTCTCCCTCTCTCCGCCCATCCATCCTCCTAGAG 60
consensus_9734#1      ------------------------------------------------------------
                                                                                  

consensus_9734#0      AGGGAGCGCGCGCAAGGAGGAGGAACAAGGGCTCCTCGGATCGGGACCAGCTGAGGATTT 120
consensus_9734#1      -----------------------------------------CGGGACCAGCTGAGGATTT 19
                                                               *******************

consensus_9734#0      GAACAAGTCAGCTTGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGT 180
consensus_9734#1      GAACAAGTCAGCTNGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGT 79
                      ************* **********************************************

consensus_9734#0      CACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTG 240
consensus_9734#1      CACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTG 139
                      ************************************************************

consensus_9734#0      GCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGG 300
consensus_9734#1      GCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGG 199
                      ************************************************************

consensus_9734#0      TCTTTCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCT 360
consensus_9734#1      TCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCT 259
                      **** *******************************************************

consensus_9734#0      CTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAA 420
consensus_9734#1      CTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAA 319
                      ************************************************************

consensus_9734#0      AATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTAC 480
consensus_9734#1      AATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTAC 379
                      ***************** ******************************************

consensus_9734#0      AATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTG 540
consensus_9734#1      AATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTG 439
                      ************************************************************

consensus_9734#0      GTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTT 600
consensus_9734#1      GTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTT 499
                      ************************************************************

consensus_9734#0      GCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGT 660
consensus_9734#1      GCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGT 559
                      ************************************************************

consensus_9734#0      CATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAG 720
consensus_9734#1      CATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAG 619
                      ************************************************************

consensus_9734#0      GAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACT 780
consensus_9734#1      GAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATAAA 679
                      **********************************************************  

consensus_9734#0      ATCAAGTGTTAGTAGTGATTACCAAGAAATTTCACAAAAAAAAAAAAAAAAAAAAAAAAA 840
consensus_9734#1      AAAAAGAAAAAAAAAA-------------------------------------------- 695
                      *  ***    *  *                                              

consensus_9734#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC 873
consensus_9734#1      ---------------------------------
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)